RNA id: XM_021568668.2


Basic Information

Item Value
RNA id XM_021568668.2
length 1949
RNA type mRNA
GC content 0.46
exon number 6
gene id LOC110494009
representative True

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 48307825 ~ 48329446 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctgctaaccatgtgtatgtgaccaataacatttgatttgatatgatttgatttaaAGAGCAGGTTTTCCCAGTGTTGCGTACACTCAGTGGCAACATCGACTTTGGGGAAAACTTCGGGTTGTTGACTTGAATCGTTCTATGTGGATACTTGCAAATAGCCCTCAGAAAGGAGGTGGGTCGTAAATCTGACAATAAAAATAAATCTGCTTCAACCTGACTGACAATTGCGAAGTTGTATCCAGATACATTTTCGTTCTGCATTTGGGGCTCGgtggattttaaaatgtatttggtttGGACTGATGTTTTCTCTCACCCGTTGTGGGCGGTATCGACGGTGATTTTGGGACTTATCTTGCGATCACAGCGGAGAGGGTCGTGGGATCCGCGCGCCTGTCTGGTGCAACTGAAGGGCAAGACAGCCATAGTTACTGGAGCTAACACAGGGATAGGGAAGTTCATTGCCCTTGACTTTGCCCTGCGCGGGGCTCGTGTTATCATGGCGTGCCGGAGCGAGGCTCGCGGTAGCGTCGCCCTGCATGAGATCCGTAAGCGGAGTGGGAATGCGGACGTGCACCTGCGTCTGGTGAACACCTCGTCCCTGGCGTCGGTGAGGGCGTTCGCAGAGGGCGTCCTGCGAGAGGAGAAGGAGCTCCACATACTGGTCAACAACGCCGGAGCTTCAGGCTTGCCTAGAGATATCACCTCAGATGGGCTAGAGGTGTCCTTCGCTACCAACCATGTGGGCCCTTTCCTCCTCACCAACTTGCTTCTGGACCTGCTGAAGCAATCCGCACCGGCACGCATCGTCAACGTGTCATCCATGAACCACTGGAAGGGTATGGTCGACTTCTCGCACTTCAAAGGCAAGAACCTGGGCTACACTATGGACAGTGTGTACAACCACACCAAGCTGCACAACGTCATCTGCACTAACGAGCTGGCGCGAAGGCTACAGGGAACAGgGGTGACAGCTAACTCCGTCCACCCCGGGTTGGTGATGACAGAAATTATGAGACACTATAACTTCATGGTTAGGTTCCTCTTCAACATGATCGGAATCTTCTTCTTCAAGTCTTCTGAGGAAGGGGCAGTGAGCACCATCTACTGTGCGGTTGCCATGGAGATGGAGGGAATAACAGGGAAGTACTTTGACAGCGACTGTTCCCTGGGTCTCCCTGCTCCCCTGGCCCGAGACCCCACCCTCGCAGTAAAGGTCTTTGAGTTCTGCGAGAGATTGACATCCAAGTtctgagagagtgagagtttATCTTCAAGTGTTTTATTCAATAGCAGACAAGTAAAATACAGTGTAAGGTTTTATAATCTATGAAGGATACATATAGTTTTGTGTTTATTTGTGCGTCTTCAGTATTGTAGAGTCCCCTAACAGCTCAGACACACCAATAATGTTTGCCGTAGGTCATGTGATATATTCAGCTGACTGTATTTTCCTTCCCTGTGAGTAGGGACCTGCGTTTTGATTAATCATCTCATATGACCTGGAACTGTAACCTTTTATTTTAAACCTTTTCCATAAATGAGAAGTAGACCAAAAAATGAAAGCAATTGTCagaggatggtgctggaccatctgagataaaaaaataaaaaataaggggacagttgtcatgtgttgctgccgtgctatgttgttgtcgtcttaggtctctatgtagtgttgtctctcgtcaggatgtgtgttgtcctatattatatttaaaaaaataatcctagcccctgcaggaggccttttggtaggccatcattgcaaataagtatttgttcttaactgacttgtctagttaaataaaatataaatggtTAAAATTCAGGTCATGTGATGTGATTAACCAAAAGACAGGGCCCTAactatgaggtgtgtgtgtatgttaatgcATAGCTGTGTGTGAAGTGGGAATTTTGTCAATAAACTTACTACCAGCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1667071 lncRNA upstream 37779 48269373 ~ 48270046 (+) True G1457158
TU1667070 lncRNA upstream 38944 48268622 ~ 48268881 (+) True G1457157
TU1667069 lncRNA upstream 39733 48267876 ~ 48268092 (+) True G1457156
TU1667068 lncRNA upstream 40092 48267420 ~ 48267733 (+) True G1457155
TU1667067 lncRNA upstream 40898 48266546 ~ 48266927 (+) True G1457154
TU1667129 lncRNA downstream 45505 48374951 ~ 48375172 (+) True G1457210
TU1667133 lncRNA downstream 54285 48383731 ~ 48383983 (+) True G1457214
TU1667134 lncRNA downstream 57556 48387002 ~ 48387756 (+) True G1457215
TU1667107 lncRNA downstream 59636 48389082 ~ 48392985 (+) True LOC110494013
TU1667104 lncRNA downstream 127374 48456820 ~ 48460888 (+) False G1457188
XM_036949998.1 mRNA upstream 72634 48194992 ~ 48235191 (+) False ubap2a
XM_036949999.1 mRNA upstream 72634 48194992 ~ 48235191 (+) True ubap2a
XM_021568664.2 mRNA upstream 128562 48152982 ~ 48179263 (+) False dcaf12
XM_021568663.2 mRNA upstream 128562 48152983 ~ 48179263 (+) True dcaf12
XM_036949997.1 mRNA upstream 133263 48152982 ~ 48174562 (+) False dcaf12
XM_021568673.2 mRNA downstream 19519 48348965 ~ 48354058 (+) False tpgs2
XM_021568671.2 mRNA downstream 19540 48348986 ~ 48354058 (+) False tpgs2
XM_021568672.2 mRNA downstream 19562 48349008 ~ 48354058 (+) True tpgs2
XR_002469225.2 mRNA downstream 59647 48389093 ~ 48424478 (+) False LOC110494013
XR_002469226.2 mRNA downstream 59647 48389093 ~ 48424478 (+) False LOC110494013
TU1666965 other upstream 271242 48030914 ~ 48036583 (+) True glrx
TU1666865 other upstream 468455 47833580 ~ 47839370 (+) True G1456969
TU1666845 other upstream 500344 47805358 ~ 47807481 (+) True LOC100135862
TU1666430 other upstream 1079029 47228219 ~ 47228796 (+) True G1456570
TU1664577 other upstream 2449324 45856249 ~ 45858501 (+) True G1454824
TU1667106 other downstream 59636 48389082 ~ 48424405 (+) False LOC110494013
TU1668086 other downstream 363875 48693321 ~ 48721244 (+) False bsnb
TU1668190 other downstream 593361 48922807 ~ 48928262 (+) False erc2
TU1668185 other downstream 598901 48928347 ~ 48938022 (+) False erc2
TU1668186 other downstream 598901 48928347 ~ 48938022 (+) False erc2

Expression Profile