RNA id: XM_036950006.1


Basic Information

Item Value
RNA id XM_036950006.1
length 4108
RNA type mRNA
GC content 0.43
exon number 3
gene id LOC110494018
representative False

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 48579310 ~ 48583667 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACGACAACATGGCGGGGTAGCTACTGCAGATAGCAAACGGAGTGATTCGATGTTGTTTTAGGTTTGTATCTGGTAAATTAGTGAAATTATTAGCTATCGTGCGCTCAGGCTCTCTGCGGAAGTTTGGTATTTTAATAGATAGTCACACACCTTGAAAGTAGTCTAGTTGGATTGAAAACTGAAACAATGGTTCGTTTTTTTAAAGCCAACATCCGCGAAGTTTAGCCACAGCTAGTTAACCTAGATAACAATCCAAATAACATGTAAGTTAAGTCAAACCAAATCATGTAGTTAATTTGGCCATGATAACATTTGAGATCTAGCCGGACGACACACACTACAATATTTCCCGCTGCTCTGTCGTTCGTTAACTAGCTACCacaagtacattcatttccaatggaacgctgcgaTTGCCTTGCGAACGTATACATCAAATTGTATGCGTTGACGGCTTGACAGACATGGTtgtgaaggtgaatgttgaacttttgctgaacacatatccagatgatgctgtgtACAATTTTGCACAATAACGCTGTCGGTATGATCGAGGCGACACACTGTCATTGCGCTAAATGGaatgcagcatcatctggatatgtgtgcgcaacaaaagttcaacactcccctgctaccatttctgtcaagccgtctatgCATACAATTTGATGTAtacgttcgataaatccaacATTAGCACCAGGTACCAAAACGAAAATTGCTGTTGGTGTGATCGTGTTGTtcaacattcatttccaatggaatgctgcgttgcagaggcagttgcagtttgttctgtgtggtgcatacaaGTTGGATTTATCAAAAGTATGCGTAGACGGCTTTACAGAAacggtagcagaaggtgaatgttgaacttttgatgcacacatatccagataaGGGGGTGTACCATTTTGCACGTTTACACTCTAGGTGTTATTGAGGCGTAGCGTTTGGCTGGAGCAAGGAGTCCAAGTAGCCAGGCAATTTGAGGATAAGACGATAACATGGAGTCCATTGATTTGGAGAGGGAGGACCCTCCTAGCTCACTATCTGGATATGCCAATGGCGAGATCATGACCTTGGAGATCTCAGACGTCTCTCCAGACTTGCTTGTTCTCGAGGTAAAGGACAGCAATCTACCAGAAAGTATCCATGGCAGCCTGGACATGGAGATGAATGCTGACTTtcatgaggatgatgatgatgggcaTGGTTTTGCAAATGTAGAACTCCAGTTCTTTCCCTGTGATGCCTGCGAAGCCTCCTTCACTAGCGAACCGGAGCTGGAGCAGCACTTGATAAGCTCTCACTCAATATGTGATGTAGCaagtgagagaggaagacagaaggCCAAGTCAATGGAAATAGAAGGTGTCTCACCCCTGCACACCTGCATGACTTGTGGGAAGGTGTTCAAATATCTAACTTCATTCCGAAAACATGAGGAAACTCATATAAAAGCCCTGTACACCTGCAAGACTTGTGGGAAGGAGTTTAAATACCTAACTTTGTTTACAAAGCACCAGGACACTCACGTTGTACCAAGAACGAGAGGAGGAAGAAAGGGTAAGTCGATCAAAGCAGTTGGCCTAAGTGTCAATAAGAAAATGAAAGGCCTTCACACCTGCAAGCACTGTGGTAAGGAGTTCAAATACGTAATGTCTTTCATAAAGCACGAGAAGACTCACAGGATCACGAGAACCAAAAGAAGCCACAAAAAACAGAGGAAACTTTCAACTTCCAAGATTATTATACGTCTTCAAGGCAATAGGAAAGATGCCACAGAAACTCATGTAAGGGCCAACAAGAAAAACAGGAAGAACAGTGAAGATACTAATGATCAGGATGCATGTATTTTAATATCTTCCGCTGAGCAGCAAACGCCTGACACGAAACGTTCTCCTCCATTTCCTTGTCTGGACTGTGGGAAGATTTTTAAGTTTTTCAAATCTTACCAAAAACACCAGAAAAGACATGCTTGGGCACAGGGCAAAAGTGAAGGAGTGCCTCCTAAACAGAAGCACGGACCAGAAGCGAAAGAAAATATTAGATGTCCGGTTTGTGGTAGAGCATTCAACAAGCAAACAACTCGCAACAAGCACCAGAACATTTATCATCTGAAAAATAACTTGCATAAAAACCCAAATGCATTAACGTGCTGTGAATGTGACCGCCATTTTGAAAAGGCAGATCTTTTCCAAAAGCACAAGTGCTTCCACCTGCGTAAGCATGTAAAGGCTTTCATAGAGGCAGGTAGGGTGAGCCAAGATGGGGATGTTTTCTATTGTCAACTCTGTGTCCTACAGCTCACCAGTGGACTGGAGTTTGAGAATCATGCCAGGGACATACACCCAGACCAGTACCGCAAAATCCTTAAAGCGGTTGGCAATATCATTAAAGACACCTTGAAAGGCTTGCAGACACGAAGGGTTGACAATCAGTCAACAAGTCAGGAGGAACCTGAAATAAACCTAAACAGTGtaggagagacggaggaggatGGATCGAGACAATTCATTTGCAAGAATTGTGGGGAATATTTCCTATATTGTGTTTCGTTTACATTTTGCGGGAAGTGTTTAAAGGATCGCAAAGACCACAGGAAAGCATCCAAGGTGTACCACTGCGAGGAATGTGGCCAACACTTTGGCCGAAAGGATCACCTGAAGCGCCACAGCTATTCTCATTCTGGCAGTTCCTTTGTCTGTTCTGATTGTGGTGTTAAATTCAGGGATCCGGGAGAGTTGCGTACACATGAAAAGACTCATCAGGTGAGAAACCACGCCTGCCAGCAGTGTGGGAAGCGGtttgaacaggaagaggaactgatgTTGCATCGTGAAGTTGCTCACCCAGAACCAGGCGGTTATACATGCCACCGGTGCGGCAAGACATTTAGTACAGTGAAAAATCTGGGAAAACACAGAATGATCCATTCAAATAAAACTCCCCATGTCTGTTCAAATTGCGGTACGAAGTTCAAGAGGCGCGAGCACCTGAGGCGGCATGAGAGTCTGCACACCAACGAGAAACCTCATCTTTGTCATTGTTGTGGTGATACATTCGGGCGGAAGGAGGACCTTAACACCCACCTCGGTAAAATGCACATCATATCAAGACATTTTCTTTGTAAAGCTTGTGGGACAAGTTTCAAGGACCGTAACGCTCTCAGGAGACATAGGTATCACGCTCACACTAAGGCTGGCAAAGTGTTCCAATGTGAGGCATGTGGCCTAAGCTTCGGTCGGGCGGATCATCTGAAGCGCCACAAGCACACACATTCCACTGAAAGACCCTTCTCATGCTCAATGTGTTACAAAGTATTCCACCGGGCAGACAACCTCAAGAAGCATGAAAGAAATCACAGGAACAAGTGGTTGGAATACCTGAACACTCACCGCCACAAAACGCCCAAGCAGGAGAGCAGATTTTCTGAGAGATCCAAGTGGAAACTGCGTCGATCTGAAGCATCGGCCCTACTAAAGCTTATCCAGAGTCACTCCAAGCAGCAGCAACATATCTGCTACGTTTGTAAAAAGACTTTCAGGGGAATTTACTATCTAAAGCGGCACCGTCTACTAAACTGCTGTGTACAAAGAAATAAAATGGATTCATTCCGGTATGGGACTGTTAAATAACCTACTTTGGGGTTGATAACCTGGCTGATTTAGAAGTGAAACTTCATTTTATTTTGTAGAACTCGTTGGTGTGTTTTTGTATACAGTGAGCtgtagagctgggacgataaactgAAAATGATCGACACCGATCGCATATCGCAGGGATTGAGCTGATATCGTTCATTAAGATAAGTAtcctatactagagaaatgtgacgtttgaaatgaaatacgtttgctaatatgggtgattgttaaGGGGACAATTGATGgttacaaccatcaaactaggaGAAGTACTAAACTCTGGTGCACATCGTTAGAAACTTGTCGTGCGATTTTATCGTTATTgcatcaattcaggcaatttatcatgatatggatttttttttgtccatATCGTCCAGCTCTAGTGAGCTATGGCTTGCTGTATTGTATTGTCATGCATTTTCACAATGAAAATTATAACATCAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1667249 lncRNA upstream 4106 48574999 ~ 48575223 (+) True G1457311
TU1667105 lncRNA upstream 107034 48456820 ~ 48472295 (+) True G1457188
TU1667104 lncRNA upstream 118441 48456820 ~ 48460888 (+) False G1457188
TU1667107 lncRNA upstream 186344 48389082 ~ 48392985 (+) True LOC110494013
TU1667134 lncRNA upstream 191573 48387002 ~ 48387756 (+) True G1457215
TU1668017 lncRNA downstream 24553 48608220 ~ 48609579 (+) True G1457973
TU1668033 lncRNA downstream 37767 48621434 ~ 48710016 (+) True G1457988
TU1668127 lncRNA downstream 165877 48749544 ~ 48749764 (+) True G1458072
TU1668138 lncRNA downstream 179959 48763626 ~ 48763825 (+) True G1458083
TU1668088 lncRNA downstream 189390 48773057 ~ 48773274 (+) True G1458033
XM_021568678.2 mRNA upstream 64037 48509877 ~ 48515292 (+) True LOC110494016
XR_002469225.2 mRNA upstream 154851 48389093 ~ 48424478 (+) False LOC110494013
XR_002469226.2 mRNA upstream 154851 48389093 ~ 48424478 (+) False LOC110494013
XR_005036995.1 mRNA upstream 154851 48389093 ~ 48424478 (+) False LOC110494013
XM_021568672.2 mRNA upstream 225271 48349008 ~ 48354058 (+) True tpgs2
XM_021568689.2 mRNA downstream 48485 48632152 ~ 48634553 (+) False LOC110494023
XM_021568690.2 mRNA downstream 48504 48632171 ~ 48634553 (+) True LOC110494023
XM_021568695.2 mRNA downstream 93340 48677007 ~ 48690097 (+) True bap1
XM_036950013.1 mRNA downstream 109657 48693324 ~ 48813223 (+) False bsnb
XM_036950016.1 mRNA downstream 282922 48866589 ~ 48938021 (+) False erc2
TU1667106 other upstream 154924 48389082 ~ 48424405 (+) False LOC110494013
TU1666965 other upstream 542746 48030914 ~ 48036583 (+) True glrx
TU1666865 other upstream 739959 47833580 ~ 47839370 (+) True G1456969
TU1666845 other upstream 771848 47805358 ~ 47807481 (+) True LOC100135862
TU1666430 other upstream 1350533 47228219 ~ 47228796 (+) True G1456570
TU1668086 other downstream 109654 48693321 ~ 48721244 (+) False bsnb
TU1668190 other downstream 339140 48922807 ~ 48928262 (+) False erc2
TU1668185 other downstream 344680 48928347 ~ 48938022 (+) False erc2
TU1668186 other downstream 344680 48928347 ~ 48938022 (+) False erc2
TU1668187 other downstream 344680 48928347 ~ 48935337 (+) False erc2

Expression Profile