RNA id: TCONS_00047174


Basic Information

Item Value
RNA id TCONS_00047174
length 2370
lncRNA type inter_gene
GC content 0.42
exon number 3
gene id XLOC_023400
representative True

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 20181997 ~ 20185025 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGTTGTTTCAGCGTGCTCTGACTGAAGGACACTAAATATTTTAGTGTTTCTCTCCGTGACTCCCTCATATAATTtcagattattatattattttttccacTTATTTCTTCGCTTAGACTGTAGATTGTAACGTTACTGAATGTTGGTTGGAATTGGAGATTGCTTTACTGTTGACTTGTCAATTTTAGGATTTtgaatacatatattttattttagatcgtGTATTATATTCTTTATGAGCTCATTTATAATCGTTGAATGCCATTTGTTATGTTGTCAGGTTGGTAGATTTTTATTTGTTCGTATGCTTTACTTGAATATTGTTATCCTGCAGATTGTAATTTGTTATATCATCAGATAAATTAAtctgttttaatgtatttgtacGCTGTCAGCTTTAACACAACTTGCATATTACTAGTCTTATTACATTAATTGTGTAtttgtagtttatgctgttggCCTGTTTAACATTTGtagctttttgttgttgtttgctcTATTTAAAGTTTTACTAATCATTGCAACACATCTATTTAATCTAAGTTTATAGATTGCCGTCTTGTAGAGTATTTATTTATAcctgtgaaatattatttgttagtGTTAGAACAGAACCAGACTGGAGACAATGGTAGTTGAAACTTCCAAGGAATGGTATAAAGATTATTTAATGACTTGATATCTTTCTATTGCATTGTGCACACACCTCAGCGATGACTGGAAATTGGTGGTCaggatttttgtttttaactcCTTCCAAGATGAAGCGGGTTGTGGTTGGTATAGATAGTTAGGTAGGCCTcgtctgtgtcaggtttttcttTCAGGTAATAGAGAAAGCAGGCAGAgtgagactcacaagagcatcgatGGACATCTATCTAAAACAGAGCAGGTAGGGCTCTGTTGGTGCTCTCTTTGTCTTTTGCAGGTTGGAATAGAGCAGAAGGAGACTTACAAGAGGAATGGTGGAAATGTAGTTGAAGACCTGGAACTCAGCAAACAGattggcatggagcatgtggagaaacggaaaaaaaacacttcattaaTGAcaagtgcattgtaaaaaaaaatcagATTTGATTGGACCACATGGAGAAATCACACCTCAGCATTAACTGGAAATTGATGGTcaggaatttttattttaaattcttccAAGATGAAGCGGGTTGTGGTTGGTATAGATAGTTAGTTTAGGCCTTGTCTCTGTCAGGTTTTTCTTTTCCAGGTAATAGAGAGAAAAGGCAGAGGAGGGAGACTCAAAAGCATCAATGGTCATATATCTGAAACAGAGCAGGTAGGTCTCTGTTGGTGCTGTCTTTGTCTTTTGCAGGTTTGAATAGAGCAGGAGGAGACTTACAAGGGGAGTGTTGGAGATATACttgaagacctggagctcagcaaacaggtagaactgcttgaacagacttAACAATAGAGTTAATGTCCAAAGAAATGTATTGAGATTAATTAAAGACTTGATGTCTCTCACTTTGGCAGATTGTcatggagcatgtggagaaaTAAAACGGTTACTgcgtaaccctcgttccccgaggggAAAACCTTGAGCACCTAGGTGGCCTGGAGTCTCAGGTAAATTTGAGAGTAGGCCAGCCTGATTTGCTGGCAAAGTTTGCTGACTGAAAATacccccccatgcggttgatatacagCACTGTTGATGTGCTGTcagtcctgaccagcacgtgtttaGCATCGGCAAAAAATGGCAAAGATCAAgatacactgccaacagctccaggcaacCGGGTTCCTTTCCACAGAGCTGCAGATGCATGGTAGCAACACATGGCCCCCCAGCCAGAACTGGAAGCTTCTGTTAAGATGACGACAAATCTAGAGACTTGCTCAAGAGGCAAGGTGGCCTGTATAAGCAAGGTCTGTCCAAGGTCTGAGGGTGCGGTGACACAGCGGAGTGACAACCACTCAGTGTGTGCCATGCTCATCTGGGAACCCGATTGTGAAGCCAATGCTGAAGCGGTCTCATATGACACAATCTGAGCGACGTGACCACGACTGCGAATGTCATTTGCCCCAGGAGCTTttgaaataatttcagtgggaccacagTTTCCACTGTCAACCCTTTCAGACAGGTCAGCATCAGCCTGGTGCGCTTTCGGGAGTGCATGCCCCCATGGTAATCGAGTCCAGCTCCAAACCGAGAAAAAAGATGCTCTGCACAGGGGCGAGCTTGCTTTTTTCTTGGCTGACCCAAAACCCAATCCGGTCGAGGTGCCGAAGTACCCTGTCCCTGTTCATAACCAATTGATCCAGAGAGTGAGCTATAATCTTAGAGATAATTAAgcatgcagatgcccgcgagccgaaacGGCG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00046274 lncRNA downstream 118947 20060691 ~ 20063050 (-) True XLOC_023398
TCONS_00046275 lncRNA downstream 119941 20060691 ~ 20062056 (-) False XLOC_023398
TCONS_00046271 lncRNA downstream 169965 20010582 ~ 20012032 (-) True XLOC_023396
TCONS_00046853 lncRNA downstream 219115 19958916 ~ 19962882 (-) False XLOC_023395
TCONS_00046854 lncRNA downstream 219115 19960872 ~ 19962882 (-) True XLOC_023395
TCONS_00047175 lncRNA upstream 265002 20450027 ~ 20501301 (-) False XLOC_023407
TCONS_00046288 lncRNA upstream 265590 20450615 ~ 20470991 (-) False XLOC_023407
TCONS_00046290 lncRNA upstream 265813 20450838 ~ 20469290 (-) False XLOC_023407
TCONS_00046291 lncRNA upstream 285753 20470778 ~ 20501301 (-) False XLOC_023407
TCONS_00046315 lncRNA upstream 952150 21137175 ~ 21139396 (-) False XLOC_023418
TCONS_00046276 mRNA downstream 29032 20064088 ~ 20152965 (-) True XLOC_023399
TCONS_00046269 mRNA downstream 165180 20006711 ~ 20016817 (-) False XLOC_023396
TCONS_00046270 mRNA downstream 165180 20010052 ~ 20016817 (-) False XLOC_023396
TCONS_00046268 mRNA downstream 462757 19708869 ~ 19719240 (-) True XLOC_023394
TCONS_00046265 mRNA downstream 463920 19707609 ~ 19718077 (-) False XLOC_023394
TCONS_00046278 mRNA upstream 3889 20188914 ~ 20192996 (-) True XLOC_023402
TCONS_00046279 mRNA upstream 8997 20194022 ~ 20208474 (-) True XLOC_023403
TCONS_00046280 mRNA upstream 29393 20214418 ~ 20321012 (-) False XLOC_023404
TCONS_00046281 mRNA upstream 44215 20229240 ~ 20320480 (-) True XLOC_023404
TCONS_00046282 mRNA upstream 147954 20332979 ~ 20369604 (-) False XLOC_023405
TCONS_00046272 other downstream 127740 20032331 ~ 20054257 (-) False XLOC_023397
TCONS_00046273 other downstream 142847 20032340 ~ 20039150 (-) True XLOC_023397
TCONS_00046264 other downstream 893229 19288654 ~ 19288768 (-) True XLOC_023393
TCONS_00046263 other downstream 1262440 18910017 ~ 18919557 (-) True XLOC_023392
TCONS_00046256 other downstream 1556630 18625252 ~ 18625367 (-) True XLOC_023390
TCONS_00046277 other upstream 2291 20187316 ~ 20187430 (-) True XLOC_023401
TCONS_00046286 other upstream 265002 20450027 ~ 20531586 (-) False XLOC_023407
TCONS_00046292 other upstream 285929 20470954 ~ 20471090 (-) True XLOC_023407
TCONS_00046297 other upstream 462450 20647475 ~ 20658668 (-) False XLOC_023409
TCONS_00046316 other upstream 954297 21139322 ~ 21144300 (-) True XLOC_023418

Expression Profile

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