RNA id: XM_021568690.2


Basic Information

Item Value
RNA id XM_021568690.2
length 1866
RNA type mRNA
GC content 0.44
exon number 4
gene id LOC110494023
representative True

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 48632152 ~ 48634553 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTTCCACGTCACACCGCAGCCCGAATTTCAACGTCAAGCGAACGCCGCATAGTCATGCTGATTGAGAATAGAACATTGCACGCAATTAAGGACAATTTTCATAATCTCTATGCAATTTAAATATTGACATTCCGCTTTTCTGTTTTCAGGAAAAGGTATCAACTCCCCCTTGTGGGGTAAAAAGGTAGCTGTGGTTGCCCTGACGTTGGATGCGCACAGTTCTACCTGTCAGTCTCTTGTACGAAGGAAAGTCCGAAAACCATGGCGGAACTCCCCGAATCAGAACCCCGAATTTACAGTGTTGGGAAAGTCGCATGTGGGATACTGACTCACGTGCTTTGTGTTGTCTTCACTGTGCTTATCACGGTATTGGCCAAGCCTGGAACAAGTTTGTTCTCTTGGCACCCTTTCCTGATGACACTGGCGTTCTCCCTCTTCATGACAGAGGCtgtgctcctcttctctccacattGCTCTCCCATTCGGAAGCTTTCCCACAAGACCAAGGGGCGTGTCCACTGGATCCTGCAGTGCCTctgtgccagctgtgccaccctGGGCCTGGCATCCATCTTCTACAACAAGCACCTGAACGGCAAGCCCCACTTCGCCTCGTGGCACGGCCTGGTGGGCCTGGGGACATTGTGTGTTGTTGGGGTGCAGTCTCTGGCCGCTCTGCCCCTCCTCTACCACTCCCTGGCTAAGGGGTGGTCCCTGGCTAAGCTAAAGCGCTACCACGCAGCGTCTGGCCTAGTCACTTATCTGCTGGGAAGTGTCAGTCTGCTCCTGGGCATATGCTCAGTGTGGTTTACAGGCACTGTGGGAGGATACACCTGGTACCTGGCAGCACTTTGCCCTGCCCTCAGCACCCTGGTCATCATGAGCCAGGTGTCCAATACCTACATGGCTAAGAAACGGCTGGTGTCCTAACCAGGCTGGCCGCCAAAGCCAAGCTCACAAACATCAGCCATAAACTATTACTGTATTCAAATGAAGCTTTAATAAAAGCTTTACCGTAAGGCTATCTTTGGAAGACCAACCTGCATTCTGCCTAATGTCCAAAAGTACCAGTGCCTTATATTGGTGAAATTATTATTTTGTTACATCTACTGCTGAACTAGTTCTAATTTCAAAGTTTGGTCTTTGTATGTTAATTCTACCTTGAGCAAAAAAAGTGCACGGAATCATCAATGAGCATAGCTTGGctgtctaaaaaaaaaatatgataacaGGCCTCGGTCTTTTGGAGTAtttagtagtatatagtagtagtatttagtagtatatagtagtagtatttagtagtatatagtagtagtattttgTATCCGAGAGCCAAGAAAGCCTGTTATGTGTCTAACGAAGTACAAATATTGGTTGTTAACCATGGAAAACAACTAGAGGCCACTGATGCTGCTTGATTTTATTTGCCTTTGGGCTTGAATGGACCAATGCACATTTTTTGTGATTGGTTTGTTTTTATAAGGTGATACATTTGTGTATTAGTTTACACTAAGGTGTGAAATTCCAGCCGAATCCGTAAGATGTCATATTTACTGATATGGTAGGCTGACTGCAATGAAGAGTCAAAAAAACAGTGTAGTGTTTACTCCCATACATTCTGTAACTCCATTACCCTCAATTTTCTTACTGATAGGACATACGCAGTTTCATCATAACCGCATCATATTCAAATCCATTATCCTCACATGGGCGTTTCATAGATTCCCGGCTGCAAGAGTGCAATTGAAGGTCGAGTTGAACATAATTCTTGGAATATACTGCAGATTATTACTGATTATTGTTGACATGTTTTGTCAAATTTATATTTTGATGcaatttcaataaaaaaatacattttgcata

Function

GO: NA

KEGG:

id description
K08371 CYB561D2; transmembrane reductase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1668017 lncRNA upstream 22592 48608220 ~ 48609579 (+) True G1457973
TU1667249 lncRNA upstream 56948 48574999 ~ 48575223 (+) True G1457311
TU1667105 lncRNA upstream 159876 48456820 ~ 48472295 (+) True G1457188
TU1667104 lncRNA upstream 171283 48456820 ~ 48460888 (+) False G1457188
TU1667107 lncRNA upstream 239186 48389082 ~ 48392985 (+) True LOC110494013
TU1668127 lncRNA downstream 114991 48749544 ~ 48749764 (+) True G1458072
TU1668138 lncRNA downstream 129073 48763626 ~ 48763825 (+) True G1458083
TU1668088 lncRNA downstream 138504 48773057 ~ 48773274 (+) True G1458033
TU1668148 lncRNA downstream 140912 48775465 ~ 48775684 (+) True G1458093
TU1668085 lncRNA downstream 171359 48805912 ~ 48814670 (+) True bsnb
XM_021568682.2 mRNA upstream 48504 48579310 ~ 48583667 (+) False LOC110494018
XM_036950006.1 mRNA upstream 48504 48579329 ~ 48583667 (+) False LOC110494018
XM_036950007.1 mRNA upstream 48504 48579329 ~ 48583667 (+) True LOC110494018
XM_021568678.2 mRNA upstream 116879 48509877 ~ 48515292 (+) True LOC110494016
XR_005036995.1 mRNA upstream 207693 48389093 ~ 48424478 (+) False LOC110494013
XM_021568695.2 mRNA downstream 42454 48677007 ~ 48690097 (+) True bap1
XM_036950013.1 mRNA downstream 58771 48693324 ~ 48813223 (+) False bsnb
XM_036950016.1 mRNA downstream 232036 48866589 ~ 48938021 (+) False erc2
XM_036950018.1 mRNA downstream 232036 48866589 ~ 48938021 (+) False erc2
XM_036950014.1 mRNA downstream 232037 48866590 ~ 48938021 (+) False erc2
TU1667106 other upstream 207766 48389082 ~ 48424405 (+) False LOC110494013
TU1666965 other upstream 595588 48030914 ~ 48036583 (+) True glrx
TU1666865 other upstream 792801 47833580 ~ 47839370 (+) True G1456969
TU1666845 other upstream 824690 47805358 ~ 47807481 (+) True LOC100135862
TU1666430 other upstream 1403375 47228219 ~ 47228796 (+) True G1456570
TU1668086 other downstream 58768 48693321 ~ 48721244 (+) False bsnb
TU1668190 other downstream 288254 48922807 ~ 48928262 (+) False erc2
TU1668185 other downstream 293794 48928347 ~ 48938022 (+) False erc2
TU1668186 other downstream 293794 48928347 ~ 48938022 (+) False erc2
TU1668187 other downstream 293794 48928347 ~ 48935337 (+) False erc2

Expression Profile