RNA id: XM_021568695.2


Basic Information

Item Value
RNA id XM_021568695.2
length 3643
RNA type mRNA
GC content 0.52
exon number 17
gene id bap1
representative True

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 48677007 ~ 48690097 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ttatactccagtctagtaggtggcggtaatgcaacatttattggatgccaaccgccgttaaacctaATCGAAGAAGAAGAATAGTAGTCTTGAATTCGACCATTTCGAAGTCGCGCATAAATGACGTGAATTAAAGCGTCCAAGCTGTCGTTCTTTTGTGTTAGAAATGAATATGTCTTCGTTCCGTTAGCTAATTGGGTAAAACTTTTGCAGTGGTTATGTGAATATGGACTGACTCAGTACTTAGCCAAATATCGATGGACTGTAATTTCATACAAAAATGAACAAAGGGTGGCTGGAACTCGAGAGTGACCCGGGGCTATTCACGCTCTTGGTGGAGGATTTTGgtGTGAAGGGGGTTCAGGTGGAGGAGATATACGACCTACAAAGCAAGTGTCCAAGTCCTGTCTATGGCTTCATCTTCCTGTTCAAGTGGATTGAAGAACGAAGGTCTAGGAGGAAAGTCTCCACCTTGGTGGATGAGACGTCTGTCATTGATGATGACATTGTTAATGACATGTTCTTTGCTCACCAGCTGATCCCCAACTCCTGCGCCACCCATGCACTTCTGAGCGTGCTCCTGAACTGTAGTGGGGTTGAGTTGGGCACTACCCTCAGCCGCATGAAGACCTTCACTAAAGGCTTCGGTCCAgagAGTAAAGGCTACGCCATTGGAAATGCCCCAGAGCTGGCCAAAGCACACAACAGCCATGCCAGACCGGAGCCCAGGCACCTGCCGGAGAAGCAGAATGGGATTAGTGCCGTGCGGACCATGGAAGCGTTCCACTTTGTCAGCTACGTGCCCATCAAAGACCGACTGTTTGAGTTAGACGGCCTCAAGGCATACCCCATTGACCACGggccatggggagaggaggaggagtggacgGACAAGGCGCGACGGGTCATCATGGAGAGGATTGGCTTGGCCACAGCTGGAGAGCCATACCATGATATCCGCTTCAACCTGATGGCAGTGGTTCCTGACCGCAGGGTGAAGTATGAGTCCAAACTAGAGATCCTCAAGAGGAACAGACAGATGGTTCTGGAGGGATTACAGCAGCTGATCCGGGTCACCCAGCCAGAGCTCGTCCAGGACAGAAAGCAGCAGGACTCCTCCCCTTCAGAGGACACACCCCCTGCTATCAAAAAAGAAGAGGCAGAGCCTCAACCTGTTACATCACAGGGGGCTGAGCAGACTCCTCCCACAGCCCAGTCCCAGTCGACACCCAGCCCCTCAGGCAAGGGGAAGGCCATGGGGAAACCAACCGCCCCAGCGGGGGGAGGGGGAGCCACGCAGCCTGTCAACAGCACCTCCCTAATCGCCCCACGACTGCCCGCCTTCCTGGACAACCACAACTACGCCAAGTCCCCCATGCAGgaggaggaggaccttgCGGCAGGGGTGACGGGGGTGGGTCGTCCCCGGGTCCCTGGCGCAAACCAGCCCCCCTTCTCTGATGTTGATGACGATGAGGAGGAAGTAACTGGCACAGCAGGAGGCACACCCACCAGGTTCAGGCGGAAGGCGGGCCTGCGTTCCCGTACGGGCCGTGCAGGCGGCGGTGGCGTGGAGACCAAGCTGGCGCTGAGTGTCCTGGCCGAGAAACTCAAGAAGGAAGTCAAGAGGAAGGACGCTCTGGCCACGCCCCTCTCGGTCCGCACCGAGGGCCGCACGGGGGGCATCGTGATCACCGCCACCTCGCAGCCTTCGCCCACGCCAAGCAACGAGAGCACCGACACCGCCTCGGAGATCGGCAGCGCTTTCAACTCGCCACTGCGCTCCCCGGCTCGCTCCCAGGCGGCCACACGACCCTCCAGCCCCGTGGCGTCCCACCTGTCCCGGGTATTGTTCGGGGAGGATGAGGGTCTGCTGAGGCTGGACGCCAGGCACAACCGGGCTGTTAGAGAGCTGGGGCCCTCCGTCAGCACTGCCCTGCTGCATCTACAGGAGGACGGTGTTATATATGCTGTACCGCCACCCGCTGATACACCACCTGAGGGGTCCAAGCGAGAGAAGGCAGGCACTCCAGAGAAGGTAAAAGACCAAGAGCAAGGGAGCAACCCAGCAGGAAGGGGGGAAGGTGTGAAGGAGGATGGTAAGGAGGGACCATCGGTGGAGGTGAAGGAGGAGCGCAAAGACGTCAAACCCAGAAAGGAAAAGATCATCTCCACGGAAACCGTTGGAAGCAACAAGCCCTCAGGGGAGAAATACTCTCCTAAAGAGCTGCTTGCTCTGCTGAAATGTGTGGAGGCGGACATCGCCAACTATGAAGTGTTTttgaaggaggaggtggagaagaggaagaaatACAAAATCGATGACCAGCGAAGGACCCATAATTATGACGAGTTCATCTGTACTTTCATATCCATGCTGGCCCAAGAAGgCATGTTGGCTAGTCTGGTCGAGCAGAATATCTCTGTGCGCCGTCGCCAGGGCGTGAGCATCGGCCGTCTACACAAACAGAGGAAACCAGACCGCAGGAAACGCTCGCGACCCTACAAGGCCAAGCGCCAGTGACCCCCAGGAAGTGTTAGCTCGGAATCACCGATCACCAATCGCAGCAGAGAAAATGCAAAAACCCTTGTTGCACTCATGACACTGTCCTGTGACGTCAGGGAGAAAAGGACTCATATTGCTGTATTTGTGTCAGTCTCTGACTTCCTCCAATGGACCATCTGttgattagtttaatcaggttTGCTTTACTGTAAGCAGAAGAGTAATTTTGTATGTTTGTGTTCCTGAGTGACACcttattccctagtgcactacttttgaccagagccctacatagtgcaatacttttttaTGGGCCCTGATCACATGTTgggcactatatagagaattgggtgccatttgggatgcactcctAGTCTCCCATGTAAAAGGACCTCTGTCTGTGCCATCACACTGTGtactgggtcgtgttcattaggcacgcGGCGCAAACTTTATGAACGTTTTGCAAATGAAAATGAGTGTTTGCAATTCCAGATagttcctccctgtttcagtctgtttttcttccatttggtgcctaatgaacacaaagGTGTGACAACTGATTGAGGGACACAGGAAGCTTCTGGGAAGTCTTTGAGTTGGTCGGATCATGTGATGTGACTCTTTCCTGTCAAGAAGGGCTGGTTTACTGCTATTTGCTTGCTTGTATTATGCTTTGGCAGTACCGTACtatgcgtcccaaatagcaccctatttcctatttagtgcactacctttaggtctctgatcaaaagtagtgacctatatagggaataaggtgcaatttgggatATACTGTATCCCCTTTTGAGGTCCTGTAAATGAATGGATTAGATCTactcttgtttttttattttttatctgtaaATGATCTCTAAATGTAGATTCTAATGTTTGAGAgcatgagatgtgtgtgtgtgtgggggagtgtGTAAGCAGTTTGTATGTTTCTGTACATATGTATCTGTCAGCTCAGCATCAGTGGTAACAGAagtgtttaaaaataataataaccctAGTCACATGAATACAATGAACTCCACAGAAGCACTATTGACCTCACTCACTTCTCATCATGCCATAGGTGGATGCTCTGGGTCATATATTTGGTGAGATAAAAACATATCACATGGG

Function

GO: NA

KEGG:

id description
K08588 BAP1, UCHL2; ubiquitin carboxyl-terminal hydrolase BAP1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1668017 lncRNA upstream 67428 48608220 ~ 48609579 (+) True G1457973
TU1667249 lncRNA upstream 101784 48574999 ~ 48575223 (+) True G1457311
TU1667105 lncRNA upstream 204712 48456820 ~ 48472295 (+) True G1457188
TU1667104 lncRNA upstream 216119 48456820 ~ 48460888 (+) False G1457188
TU1667107 lncRNA upstream 284022 48389082 ~ 48392985 (+) True LOC110494013
TU1668127 lncRNA downstream 59447 48749544 ~ 48749764 (+) True G1458072
TU1668138 lncRNA downstream 73529 48763626 ~ 48763825 (+) True G1458083
TU1668088 lncRNA downstream 82960 48773057 ~ 48773274 (+) True G1458033
TU1668148 lncRNA downstream 85368 48775465 ~ 48775684 (+) True G1458093
TU1668085 lncRNA downstream 115815 48805912 ~ 48814670 (+) True bsnb
XM_021568689.2 mRNA upstream 42454 48632152 ~ 48634553 (+) False LOC110494023
XM_021568690.2 mRNA upstream 42454 48632171 ~ 48634553 (+) True LOC110494023
XM_021568682.2 mRNA upstream 93340 48579310 ~ 48583667 (+) False LOC110494018
XM_036950006.1 mRNA upstream 93340 48579329 ~ 48583667 (+) False LOC110494018
XM_036950007.1 mRNA upstream 93340 48579329 ~ 48583667 (+) True LOC110494018
XM_036950013.1 mRNA downstream 3227 48693324 ~ 48813223 (+) False bsnb
XM_036950016.1 mRNA downstream 176492 48866589 ~ 48938021 (+) False erc2
XM_036950018.1 mRNA downstream 176492 48866589 ~ 48938021 (+) False erc2
XM_036950014.1 mRNA downstream 176493 48866590 ~ 48938021 (+) False erc2
XM_036950015.1 mRNA downstream 176493 48866590 ~ 48938021 (+) False erc2
TU1667106 other upstream 252602 48389082 ~ 48424405 (+) False LOC110494013
TU1666965 other upstream 640424 48030914 ~ 48036583 (+) True glrx
TU1666865 other upstream 837637 47833580 ~ 47839370 (+) True G1456969
TU1666845 other upstream 869526 47805358 ~ 47807481 (+) True LOC100135862
TU1666430 other upstream 1448211 47228219 ~ 47228796 (+) True G1456570
TU1668086 other downstream 3224 48693321 ~ 48721244 (+) False bsnb
TU1668190 other downstream 232710 48922807 ~ 48928262 (+) False erc2
TU1668185 other downstream 238250 48928347 ~ 48938022 (+) False erc2
TU1668186 other downstream 238250 48928347 ~ 48938022 (+) False erc2
TU1668187 other downstream 238250 48928347 ~ 48935337 (+) False erc2

Expression Profile