RNA id: XM_036950017.1


Basic Information

Item Value
RNA id XM_036950017.1
length 8709
RNA type mRNA
GC content 0.51
exon number 20
gene id erc2
representative False

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 48866589 ~ 49040356 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCTTTAACAATCAGACTGTGCAGCTCCCTTGCGGGTAGGGGGAGAAATCGCGTGTCCGCTACCCAATGACAGTGCAGGATGCTGAGACCGGTGTGAATGGAGGCTGGAAGACGCCACTGTCTCTGGATGGTGATGGAGAGGAACTAATGGTAGAAAAAGatctgtcgaTGTCGAGGTCCTTCACCCACACAGGCATGCAGTGAGCCGCCCATGTGTGTTACAGAGTGAGGGTGCACTGTGATCGTCGCAGCGTGCCCCTGGTAAGGACTCCGTGGCAAGCGTCCGGCCGGCCCAGGCCACACCTCCCACACCCAGGACATGTACGGCAGCGCCAGAGCGGTCGGCCACATCGAGAGCAGCCCTGCACGGTCCCCGCGCCTGCCTAGGTCCCCCAGGCTGGGCCACCGGAGGGCCAACAGTGGGGGCGGGGGCGGTGGAGGGGGTAAGACGCTCTCCATGGAGAACATCCAGTCACTGAACGCTGCCTACGCCACGTCCGGGCCCATGTACCTAAGCGACCACGAGGGAGTGGGCTCAACCGCTACCTACCCTAAGGGCACCATGACGCTGGGGCGAGCCTCCAACCGGGCCATGTACGGGGGCCGCGTCACGGCCATGGGCAGCAGCCCCAACATCGCCTCGGTGGGGCTGGGCCACCACGCTGACCTGCTGTCCTACAGCGACCTGGGCTCCCTGTCCATGctgcagcaccaccaccaccaccctcaggGGGTGCCGTCAGCCCTGTTGCGGCAGGCTGTGCGAGGCAGTGGGGGGGAACTCCTGGAGATGCAGGCCACACTCCGGGACATGCAGCGGGAGAACGACCTGCTgaggagagagctggacctgaagGACAGCAAGCTGGGCTCGTCCACCAACAGCATCAAGAGCTTCTGGAGCCCCGAGCTGAAGAAGGAGAGGATGATACGCAAGGAGGAGGCGGCGCGCACCTCCGTCCTCAAGGAGCAGATGAGGGTGACTCACGAGGAGAACCAGCACCTGCAGCTGACCATCCAGGCCCTACAGGACGAGCTGCGGACCCAAAGGGACCTGAACCACCTACTGCAGCAGGAGAGCGGCGGCCGCTCTGGGGACCACTACACCAACATCGAGCTGACTGAGGAGAACTTCAGACGGCTACAAGCCGAGCACGACCGCCAGGCCAAGGAGCTGTTCCTCCTGAGGAAGACCTTGGAGGAGATGGAGCTGCGGATCGAGACCCAGAAGCAGACACTGGGGGCCAGGGACGAGTCCATCAAGAAGCTGCTGGAAATGCTCCAGAGTAAGGGTCTGCCTGGGGGGCCAGGCAGGGTcaatgaggaggaggagcaggagagagcCAGGCGCATTGCTGAGGCCGAGGCTCAACTTGGACACCTGGAGGTCATCTTGGaccagaaggagaaggagaacatCCACCTCCGAGAGGTGTTCTCCCAGGAACTGCACAGGAGAAACCAGATGCACCAGGACCCTGGCAAAACCAAAGCCCTCCAGACCATCATAGAGATGAAGGACACCAAGATAGCATCTCTGGAGCGCAACATCAGGGACCTGGAGGATGAGATCCAGATACTGAAGGCTAACGGCTTGCTGAACAccgaggacagagaggaggagatcaAACAGATGGAGGTCTACAAGAACCACTCCAAGTTCATGAAGaccaagatTGACCAGCTGAAGCAGGAGCTGTCTAAGAAGGAGTCTGAGCTGCTGGCCCTGCAGACCAAGCTGGAGACCCTGAACAACCAGAACTCGGACTGCAAACAGCACATAGAGGTGCTCAAAGAGTCTCTCACTGCCAAGGAGCAGCGCGCCGCCATTCTGCAGACAGAGGTGGACGCCCTGCGCCTGCGTCTGGAGGAGAAGGAATCCTTCCTGAACAAGAAGACCAAGCAGCTGCAGGACCTGACGGAGGAGAAGGGCACGCTGGCCGGAGAGATCCGTGATATGAAGGACATGCTGGAGGTCAAGGAGAGGAAGATCAACGTCCTGCAGAAGAAGATTGAGAATCTGCAGGAGCAGCTGCGTGATAAGGACAAGCAGTTGGGGAACCTGAAGGACAGGGTGAAGTCCCTACAGACTGACTCCAGTAACACTGACACGGCCCTGGCCACCCTGGAGGAGGCACTCTCTGAAAAGgAGCGTATTATAGAGAGACTGAAGgagcagagagcgagggaggacaACGAGAGGATGGATGAAGTGGAGTCTTATAAGAAGGAGAACAAGGACCTCAAGGAGAAGGTCAACACCCTGCAGCTGGAATTAACAGAGAAGGAGTCCAGTCTCATTGACTTAAAGGAGCACGCCTCATCCCTGGCCTCCTCCAGCCTGAAGAAGGAGTCCAAGCTCAAGTCTCTGGAGATGGCCATCGAGCAGAAGAAAGAGGAGTGTAGTAAGTTGGAGACACAGTTACAGAAGAAGGCCCACGAGGTCCACGAGgtccaacagcagcagcagatggCGGGGCTGGGCTCCAGGGGGAACCCAGACTACGTGGAGCGGGAGCGGGAACAGCGGGTAAAGCTCCTGGAGAAGGAAGTGTCCTACTACAAGGAGGAGTCTGGCAAGGCCCAGGCGGAGGTGGAGAGGCTACTAACCATCCTccgagaggtagagagcgagaagAACGACAAGGACAAGAAGATCGCCGAGCTGGAGAGCCTAGCACCCAGGCAGGCCAAGGAGCAAGTTACTAAGAAGGGGGGTCCCAACCTCAAACTAGGCCCCCAAGGGGACAAGAAGCCTGGTCAGATAGTGGGGGATCCTCGAAAGGACAACACCATGGACTCAGGACAGCATGTAAAGCTGGAGGAGATGATGAACACCCTGGAGAGGACCAGACAGGAGCTGGACGCCACCAAGCAGCGCCTCTCGTCTACCCAGCAGTCCCTGCAGGAGAGAGACGGTCACCTGACAAACATGAGGCAGGAGCGCAGGAAACAGTTGGAGGAGATCCTGGAAATGAAgcaACAGGCCCTGTTGGCAGCTATCAGTGAGAAGGACGCTAACATTGCTCTGCTAGAGCTGTCTGCCTCTGGGAAGAAGAAGACCCAGGAAGAGGTTTTGGCTCTgaagagggagaaggacagactGATGCACCAACTCAAACAGCAGACACAGAGCAGGATGAAGCTGATTGCTGACAACTATGAAGACGACCACTACCAcccccatcctcctcaccacacCCAACCCCAGCAACCCCACCCGGGCCCCCAGGCTCAGCTCCCCCAGCCACAGTATCAGCACCCTCCTAACccccagcagcagcaacagcctCCATACCCCCATGCCCCACACTCCCAGCACCCCCAGCCCCCACCCCAACAACACCCGCACCCCCAGCAGCCTCAACAGCAGTACCCCCCTCATCCACAGCAGCATCCACAGGGGCATCCCCAACAGCCTCCGCCTCAGCACCAACAACACCAACCACGGCCCCAGCACCCGCAACAAGCACAGCACCCACACCCACAACAACAACACGCCCACCCAGGACAGCACCCCCATGGGCCTCCACCACAGCAGCAGCACCCCCACctacaacagcacctccaacagcACCCACAACAGCATCCACAGCAGCACCCCCACGGCCCCCCTCTGCAAGCTCCCCACCCCCAGCACCCACATCCCCAGCAGCACCCCCACCACCCTCCACACGCTCCGCAACAGCACGGCGGACACCCCCGCCACCCGCCCCCACACCACCGCGGAGGACCAGGGCCTGCCAGAGGACCCCCCCATGCCGGCCATCGCCCCTCCCCCGACCAGGATGACGAGGAGGGCATTTGGGCGTAATCGTGTCCATGACAACCAAAGCTCTGACGTTCGGAGGgATGATTCAGTTACTGTTGGAGGAGCACAGCCATTCCATGATGCTGAAATACATTGACTACCTACCAACCTTTTGTTACCACCATACAATCCACACTTCAATGGggcctttatttttattttttgatgaggaggaggaggaggaagaggagggatgaaGCAGGTGGGAGGGCCAGATGAGGAGACTGATAGTTGAGgtGACTGAAGAGCCATCATGTGAAGAGGGGCAGCTGCAGCTCTTTGAGAGTGACTCTGGGGAGGAGGAGTCTTCCAGCAGACACATAGGTGTTGTGAAGTTAGACTGGGTTGGACAGACTGGGccccactcagacagacagatatctgGGCTGTCTGGTCTCAGCTCTGTGGTTCTGCTCACACAGCCAAACTCACACAACCACTCTGGTATAGTTGTCAAGATGCTCAGCTCACCTGTCTGTCACCTGACGTCCCTACAGAGCCCCACCCACTCTCATAAGACTAGCTGCACTCTTCACCCACTTGGCTAAGATCTAACGACTGGCTCTGCCCTGTTTACATGAGGTGCGTTCAGTTCAATTGAACATTTGCTACATTGCGGAACAGTTTGTACTGAACAAAACGTTTCCCCAAAACATTCTTGTACGTTCTTGAACAGACTTCTAGGTACGTTTCCTCCCGTTTGGGCgggtgtggcttgaagcaatgagTGACATATTTAAAGGGAAGTGGCCATGTTGACAGCAGTCATTCAGTACAGCACTGTTTCTGTTCAATGGAACGTTCCAGAACGTAAAAATGTACTGAACCCAGTCCTGGCTTGCTCCCCCGTTCTCACCAACCTGCATCTAATTGGTTCACTCTCCTGTCTCCGCCTGCTTTGCTTACCTGAGCTTTTCACCTGATTAGTTCCTCTGTATCAACAGTCCTTTCTCTGATTGGTTCACCTGACTGGCTCCGCCCTGTTTACCTGATTGGCCCCACCCTGCTGACCCCCGGCTGGCTGTGATTGGCCCCCTTGCCTGGCAGGCTCCACCCTACTGACAGTCAAACACAGCAGCTTCACAGTGCTTCTTTTactatgttgtgttttgttgttttctctttgtcagaGATAGCCTGCTCTCTTTCCACATATTTAATGAAGTGCCGTACAGTTACAGCTTTAGTTCACATTTACATATGCGTTAACAGCTAACCTACTTCAGAGGAAGTTCCTTTGCTGTATGTCTAAAAGTGAAGTTGTGctacttatttttttatttttttaatctgttGAGTCTGTTTCATTTGCAGTGCTTGACCATGGCTATGAGTGCTTTGTGCAAAGTGAATCAGAACAAGGAAGAGCTCTTATCTGAACGAAGCAGCCACTAGAGCTCTAATCTGACCAATGGGCAGCCACGGTCCTTGCCTCGACTACTGAAGGTTTCCCTGTGCCGTTAATGTGCAGTCTGGCATGGCCTTATGGGCAGGGCCCTGTCTTGGGGGTGTCGCAGGGACTTTGGGCTTAGGGCTGCCATCTGTGtatctctcctgttacctcagttGAACCAGATGCAGTCAGAACTCCAATCTATGCAGACGTCAGAACTAATAATGCCACTTTGAATCCAGTCATGAGTCAAGGGCACCAATCAAAAAGTGTTTAGATGTATTAAAGCAGCACGAGTACCAATCAGAATGGTCTATTCAGAACATACACCAATCAGATAACGTTGTTATAATGTGTTTCTCAGCGTGATATGCACCTatgcacctcctcctcccctgttgCAGGGATACTTCTAATGGTGCTTTAGATCACTGGTGCTCACACAACATGGTGTCCAACCAGAGAAACAGCTGAGAGACATGGCCATTGGACATTGTGCATCCATGTCATTCAATAGGGAGTTGATCCCAAAACCTGATGTGCTTATAAACTGTAGAAGACTGTGTTGTACATAGAATCAGCTGGAGAGACTCTGAGGAAATGGTGCAAGGAGGCTATAGATTTTATATGTTTGATGCCATCCATGGACACCCATGAGATTTCCTGCCATACCTTTACAGCCATCTCTCCTGCTCATTGActgcctccttcctcctcctcaacTTCTTCATctcccctttcttcttctctttcagcAGTCTGTGCTAACCCAAATCCAAACCTAGTGACTCGTTTTGTCCTTCTCAACAAGGTGGCCTGTGcctcattcatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatagagagagagagagacagaaaggtctatgtagtgtgtctatgtgtggtCAGAATATTGTCAGTAACAAAACATATTGAggataaaaatacatgttttatttaatttttctAACTGTCCAAAGGATAGAGAAAACCCTTATTCAGTGTGTGAAGTGACGTATGTGACTTTCCTCTGTTTGTACAAGAAAAAACTCCTTAGCAGCAAGCAACATTCCCTGTCTGTGGTTCTCACAAAGGATAGTCTGGCCTAAGAAACCTTGAGACACAGCCCAATGCAAAGCAGTGAGAAAATGATTCCATTCTCATTTAGAAGAGCTAATGTTACATTCCTGTTGCAGTGTGAGAAATCTATTTTgagactctctcacacacacacacacacacacacacacacacacatacacacacacacacatacatacacacacacacatacatacatacatacatacatacatacatacatacacacacacacaattgggtTAGTGAGACCTTAGTCTTCTCACAGAGGGGAAGACATTCTATTTTTGCAGCTCACTAAAGTAGCAAAGAGACTATTTTCTGCAGCACAGCAGATAGAAACTTGCACTTGTGAGTGAGGACTATCACTACCTTTGTTAAAAAGGAGGTTTGGAGTGACTCTGTCGTTGCATATGCATTGTCCAGCGGTCtctgtgttttgtttgttgttgtcttCATGCTGTTGTGTACCCAGATGTGGTGACATATGTGACAGTTGAGTGTGTAGAAAACCACACTTCTAGTGAGAAAACATCCAAGACTGTTACATCCCCccactcccaccaccaccaccaccaccacctgcccCCCTCCGTcctccatggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttccctccTTGTGGCTGATATCGTAACTGTTGTAGAAAAGTGCCCCATCCTCCATTGGGATCCAAACAGAAGTGATCCCTATACGATCGTCACCTCAACACAGAATACAGACAGGACAGTTGCCTCACAACTCCTCCTCCGATTGACTAACAATCACCAGTTCGGATTAAATCAAATTGAAGAAAATAAAGGCGTTGTGTGGATGTTGTATTTGTGTTTTCAATGTCAGAGATTGGTACTAATGATCTGTAAAAGGAAAGGCAATCCAGAAGAGCACACGGATGGAGGCGCGAATAACCTCTGACTTTACCATCATGGGGAACGGATTCAGAATCCTCAATTTTCAGGTCATTTACAACTGAATACTTGAAGTAGGGGGTTCTCCTACTATGAGAAGTGAATATCCAGCACTTGGTATATAGAACACGGTAGAACACGTGGAACACTTCATTGTGCTGATGCATGCAGATTTTTACGTAATGTGCCAACTGAGTGTGAAAGGTTGGGGAGAATCTCCTATCCTCTATGCAGAGTGAGATCTTGAGGTACAATCAAACTGTTAAGGTTTCATCAATGGCCTATCAGTTAACATacatcagggttgtgttcattagggcacgcaatgttttaaaatgtttagCAACGGAAAATGAGAATGAGCCTTTCTCATCGGACAAGTCCCAAGTAATCCTTCCCTGTATCAGTGCATTTtttttctgtttggtgcctaatgaacatgacccaggagtTGAAGGCCAACAGACATCACCAATAGTAATTGAAGGAGTAAAAGACCTGGTTCAGAGTATGAGAAGCCTAATACAGGAAAACAGATTAACTTTCTTTGTCATGTACAAGTTGCATTTGATTTATTGTATGATGTTGAAAATGCAAACCTTTGGATGAAACAAAACACTGTGACCAACGCcagatttttctttttttactgaACAATTGCGTTAATTTTTTGTATTTAAGTTtttcttgattacatttttttttatcagtttGGCTTATTGAATATGTCAGTTTGGGACTGTACTATTTGTAATAGTAAATGTTTTCTGCTGTACAGTAAAGATTTAGGAACAAGATAAATGTGTGTCCAGCATGCTGAATGATTACTTGTGTGAACGTGGGCTTATTTCCCATGATGCTCCAGTTCTCATACATGAATTGCCTCTGCATCGTGACAGTGTGATGTTGTGTTTGAGAGTGGTGTGTGTCTCCTCACCTTCCGTGTCCCCCTAGTAGACAACCTGTGCAGTGTTATGAGAGAGGCGGCATATTTTTGGGGTGTTACGCGTGTAAatctgtgaagtgtgtgtgtgtgtgtgtgtgcgcatgcatacgtgtgtatgtgtactgtaggtgtgtgtgcgcgcatgtgtaaGAGCTAAAGAAATAGTGAGAGAGAATCAAAACACTCTGTTGCAGGAAACcccctgagagaaagagagagaatgttatGTTCAGCATGGATACTGTGTTTTCAAACCTACTGTAGGAGGCTGTGTCCACTGCCCCAGACGTTTGCTATTGTATGTGCTGTATCAGAATATTACTAATGAGTGTTGGCCAGCTTGTTTATATTCATTCAATAAAGGTGACTTTCTTTCAGACGTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1668203 lncRNA upstream 18356 48848028 ~ 48848235 (+) True G1458140
TU1668202 lncRNA upstream 18879 48847397 ~ 48847712 (+) True G1458139
TU1668179 lncRNA upstream 33310 48832798 ~ 48833281 (+) True G1458124
TU1668178 lncRNA upstream 35683 48830321 ~ 48830908 (+) True G1458123
TU1668176 lncRNA upstream 37107 48829276 ~ 48829484 (+) True G1458121
TU1668239 lncRNA downstream 7464 48945485 ~ 48950296 (+) True G1458176
TU1668196 lncRNA downstream 35184 48973205 ~ 49003577 (+) True G1458133
TU1668263 lncRNA downstream 39880 48977901 ~ 49011971 (+) True LOC110494028
TU1668312 lncRNA downstream 81366 49019387 ~ 49020680 (+) True G1458226
TU1668324 lncRNA downstream 130006 49068027 ~ 49083653 (+) True G1458237
XM_036950013.1 mRNA upstream 53368 48693324 ~ 48813223 (+) False bsnb
XM_021568695.2 mRNA upstream 176494 48677007 ~ 48690097 (+) True bap1
XM_021568689.2 mRNA upstream 232038 48632152 ~ 48634553 (+) False LOC110494023
XM_021568690.2 mRNA upstream 232038 48632171 ~ 48634553 (+) True LOC110494023
XM_036950007.1 mRNA upstream 282924 48579329 ~ 48583667 (+) True LOC110494018
XM_036948351.1 mRNA downstream 39615 48977636 ~ 48980567 (+) True LOC118940102
XM_021568700.2 mRNA downstream 71987 49010008 ~ 49028325 (+) False LOC110494028
XM_036950021.1 mRNA downstream 71987 49010008 ~ 49028325 (+) False LOC110494028
XM_036950022.1 mRNA downstream 71987 49010008 ~ 49120417 (+) False LOC110494028
XR_005036997.1 mRNA downstream 95941 49033962 ~ 49035924 (+) True LOC118940474
TU1668086 other upstream 145347 48693321 ~ 48721244 (+) False bsnb
TU1667106 other upstream 442186 48389082 ~ 48424405 (+) False LOC110494013
TU1666965 other upstream 830008 48030914 ~ 48036583 (+) True glrx
TU1666865 other upstream 1027221 47833580 ~ 47839370 (+) True G1456969
TU1666845 other upstream 1059110 47805358 ~ 47807481 (+) True LOC100135862
TU1668956 other downstream 500985 49439006 ~ 49439329 (+) True G1458807
TU1669722 other downstream 1243144 50181165 ~ 50183696 (+) True LOC110494957
TU1669855 other downstream 1492786 50430807 ~ 50435706 (+) False atxn7l2a
TU1670065 other downstream 1838508 50776529 ~ 50777072 (+) True G1459769
TU1670568 other downstream 1956919 50894940 ~ 50897444 (+) True LOC110494047

Expression Profile