RNA id: TU1668185


Basic Information

Item Value
RNA id TU1668185
length 4997
RNA type TUCP
GC content 0.44
exon number 4
gene id erc2
representative False

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 48866589 ~ 49040356 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCCACACCACCGCGGAGGACCAGGGCCTGCCAGAGGACCCCCCCATGCCGGCCATCGCCCCTCCCCCGACCAGGATGACGAGGAGGGCATTTGGGCGTAATCGTGTCCATGACAACCAAAGCTCTGACGTTCGGAGGgATGATTCAGTTACTGTTGGAGGAGCACAGCCATTCCATGATGCTGAAATACATTGACTACCTACCAACCTTTTGTTACCACCATACAATCCACACTTCAATGGggcctttatttttattttttgatgaggaggaggaggaggaagaggagggatgaaGCAGGTGGGAGGGCCAGATGAGGAGACTGATAGTTGAGgtGACTGAAGAGCCATCATGTGAAGAGGGGCAGCTGCAGCTCTTTGAGAGTGACTCTGGGGAGGAGGAGTCTTCCAGCAGACACATAGGTGTTGTGAAGTTAGACTGGGTTGGACAGACTGGGccccactcagacagacagatatctgGGCTGTCTGGTCTCAGCTCTGTGGTTCTGCTCACACAGCCAAACTCACACAACCACTCTGGTATAGTTGTCAAGATGCTCAGCTCACCTGTCTGTCACCTGACGTCCCTACAGAGCCCCACCCACTCTCATAAGACTAGCTGCACTCTTCACCCACTTGGCTAAGATCTAACGACTGGCTCTGCCCTGTTTACATGAGGTGCGTTCAGTTCAATTGAACATTTGCTACATTGCGGAACAGTTTGTACTGAACAAAACGTTTCCCCAAAACATTCTTGTACGTTCTTGAACAGACTTCTAGGTACGTTTCCTCCCGTTTGGGCgggtgtggcttgaagcaatgagTGACATATTTAAAGGGAAGTGGCCATGTTGACAGCAGTCATTCAGTACAGCACTGTTTCTGTTCAATGGAACGTTCCAGAACGTAAAAATGTACTGAACCCAGTCCTGGCTTGCTCCCCCGTTCTCACCAACCTGCATCTAATTGGTTCACTCTCCTGTCTCCGCCTGCTTTGCTTACCTGAGCTTTTCACCTGATTAGTTCCTCTGTATCAACAGTCCTTTCTCTGATTGGTTCACCTGACTGGCTCCGCCCTGTTTACCTGATTGGCCCCACCCTGCTGACCCCCGGCTGGCTGTGATTGGCCCCCTTGCCTGGCAGGCTCCACCCTACTGACAGTCAAACACAGCAGCTTCACAGTGCTTCTTTTactatgttgtgttttgttgttttctctttgtcagaGATAGCCTGCTCTCTTTCCACATATTTAATGAAGTGCCGTACAGTTACAGCTTTAGTTCACATTTACATATGCGTTAACAGCTAACCTACTTCAGAGGAAGTTCCTTTGCTGTATGTCTAAAAGTGAAGTTGTGctacttatttttttatttttttaatctgttGAGTCTGTTTCATTTGCAGTGCTTGACCATGGCTATGAGTGCTTTGTGCAAAGTGAATCAGAACAAGGAAGAGCTCTTATCTGAACGAAGCAGCCACTAGAGCTCTAATCTGACCAATGGGCAGCCACGGTCCTTGCCTCGACTACTGAAGGTTTCCCTGTGCCGTTAATGTGCAGTCTGGCATGGCCTTATGGGCAGGGCCCTGTCTTGGGGGTGTCGCAGGGACTTTGGGCTTAGGGCTGCCATCTGTGtatctctcctgttacctcagttGAACCAGATGCAGTCAGAACTCCAATCTATGCAGACGTCAGAACTAATAATGCCACTTTGAATCCAGTCATGAGTCAAGGGCACCAATCAAAAAGTGTTTAGATGTATTAAAGCAGCACGAGTACCAATCAGAATGGTCTATTCAGAACATACACCAATCAGATAACGTTGTTATAATGTGTTTCTCAGCGTGATATGCACCTatgcacctcctcctcccctgttgCAGGGATACTTCTAATGGTGCTTTAGATCACTGGTGCTCACACAACATGGTGTCCAACCAGAGAAACAGCTGAGAGACATGGCCATTGGACATTGTGCATCCATGTCATTCAATAGGGAGTTGATCCCAAAACCTGATGTGCTTATAAACTGTAGAAGACTGTGTTGTACATAGAATCAGCTGGAGAGACTCTGAGGAAATGGTGCAAGGAGGCTATAGATTTTATATGTTTGATGCCATCCATGGACACCCATGAGATTTCCTGCCATACCTTTACAGCCATCTCTCCTGCTCATTGActgcctccttcctcctcctcaacTTCTTCATctcccctttcttcttctctttcagcAGTCTGTGCTAACCCAAATCCAAACCTAGTGACTCGTTTTGTCCTTCTCAACAAGGTGGCCTGTGcctcattcatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatagagagagagagagacagaaaggtctatgtagtgtgtctatgtgtggtCAGAATATTGTCAGTAACAAAACATATTGAggataaaaatacatgttttatttaatttttctAACTGTCCAAAGGATAGAGAAAACCCTTATTCAGTGTGTGAAGTGACGTATGTGACTTTCCTCTGTTTGTACAAGAAAAAACTCCTTAGCAGCAAGCAACATTCCCTGTCTGTGGTTCTCACAAAGGATAGTCTGGCCTAAGAAACCTTGAGACACAGCCCAATGCAAAGCAGTGAGAAAATGATTCCATTCTCATTTAGAAGAGCTAATGTTACATTCCTGTTGCAGTGTGAGAAATCTATTTTgagactctctcacacacacacacacacacacacacacacacacatacacacacacacacatacatacacacacacacatacatacatacatacatacatacatacatacatacacacacacacaattgggtTAGTGAGACCTTAGTCTTCTCACAGAGGGGAAGACATTCTATTTTTGCAGCTCACTAAAGTAGCAAAGAGACTATTTTCTGCAGCACAGCAGATAGAAACTTGCACTTGTGAGTGAGGACTATCACTACCTTTGTTAAAAAGGAGGTTTGGAGTGACTCTGTCGTTGCATATGCATTGTCCAGCGGTCtctgtgttttgtttgttgttgtcttCATGCTGTTGTGTACCCAGATGTGGTGACATATGTGACAGTTGAGTGTGTAGAAAACCACACTTCTAGTGAGAAAACATCCAAGACTGTTACATCCCCccactcccaccaccaccaccaccaccacctgcccCCCTCCGTcctccatggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttccctccTTGTGGCTGATATCGTAACTGTTGTAGAAAAGTGCCCCATCCTCCATTGGGATCCAAACAGAAGTGATCCCTATACGATCGTCACCTCAACACAGAATACAGACAGGACAGTTGCCTCACAACTCCTCCTCCGATTGACTAACAATCACCAGTTCGGATTAAATCAAATTGAAGAAAATAAAGGCGTTGTGTGGATGTTGTATTTGTGTTTTCAATGTCAGAGATTGGTACTAATGATCTGTAAAAGGAAAGGCAATCCAGAAGAGCACACGGATGGAGGCGCGAATAACCTCTGACTTTACCATCATGGGGAACGGATTCAGAATCCTCAATTTTCAGGTCATTTACAACTGAATACTTGAAGTAGGGGGTTCTCCTACTATGAGAAGTGAATATCCAGCACTTGGTATATAGAACACGGTAGAACACGTGGAACACTTCATTGTGCTGATGCATGCAGATTTTTACGTAATGTGCCAACTGAGTGTGAAAGGTTGGGGAGAATCTCCTATCCTCTATGCAGAGTGAGATCTTGAGGTACAATCAAACTGTTAAGGTTTCATCAATGGCCTATCAGTTAACATacatcagggttgtgttcattagggcacgcaatgttttaaaatgtttagCAACGGAAAATGAGAATGAGCCTTTCTCATCGGACAAGTCCCAAGTAATCCTTCCCTGTATCAGTGCATTTtttttctgtttggtgcctaatgaacatgacccaggagtTGAAGGCCAACAGACATCACCAATAGTAATTGAAGGAGTAAAAGACCTGGTTCAGAGTATGAGAAGCCTAATACAGGAAAACAGATTAACTTTCTTTGTCATGTACAAGTTGCATTTGATTTATTGTATGATGTTGAAAATGCAAACCTTTGGATGAAACAAAACACTGTGACCAACGCcagatttttctttttttactgaACAATTGCGTTAATTTTTTGTATTTAAGTTtttcttgattacatttttttttatcagtttGGCTTATTGAATATGTCAGTTTGGGACTGTACTATTTGTAATAGTAAATGTTTTCTGCTGTACAGTAAAGATTTAGGAACAAGATAAATGTGTGTCCAGCATGCTGAATGATTACTTGTGTGAACGTGGGCTTATTTCCCATGATGCTCCAGTTCTCATACATGAATTGCCTCTGCATCGTGACAGTGTGATGTTGTGTTTGAGAGTGGTGTGTGTCTCCTCACCTTCCGTGTCCCCCTAGTAGACAACCTGTGCAGTGTTATGAGAGAGGCGGCATATTTTTGGGGTGTTACGCGTGTAAatctgtgaagtgtgtgtgtgtgtgtgtgtgcgcatgcatacgtgtgtatgtgtactgtaggtgtgtgtgcgcgcatgtgtaaGAGCTAAAGAAATAGTGAGAGAGAATCAAAACACTCTGTTGCAGGAAACcccctgagagaaagagagagaatgttatGTTCAGCATGGATACTGTGTTTTCAAACCTACTGTAGGAGGCTGTGTCCACTGCCCCAGACGTTTGCTATTGTATGTGCTGTATCAGAATATTACTAATGAGTGTTGGCCAGCTTGTTTATATTCATTCAATAAAGGTGACTTTCTTTCAGACGTGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1668203 lncRNA upstream 80112 48848028 ~ 48848235 (+) True G1458140
TU1668202 lncRNA upstream 80635 48847397 ~ 48847712 (+) True G1458139
TU1668179 lncRNA upstream 95066 48832798 ~ 48833281 (+) True G1458124
TU1668178 lncRNA upstream 97439 48830321 ~ 48830908 (+) True G1458123
TU1668176 lncRNA upstream 98863 48829276 ~ 48829484 (+) True G1458121
TU1668239 lncRNA downstream 7463 48945485 ~ 48950296 (+) True G1458176
TU1668196 lncRNA downstream 35183 48973205 ~ 49003577 (+) True G1458133
TU1668263 lncRNA downstream 39879 48977901 ~ 49011971 (+) True LOC110494028
TU1668312 lncRNA downstream 81365 49019387 ~ 49020680 (+) True G1458226
TU1668324 lncRNA downstream 130005 49068027 ~ 49083653 (+) True G1458237
XM_036950013.1 mRNA upstream 115124 48693324 ~ 48813223 (+) False bsnb
XM_021568695.2 mRNA upstream 238250 48677007 ~ 48690097 (+) True bap1
XM_021568689.2 mRNA upstream 293794 48632152 ~ 48634553 (+) False LOC110494023
XM_021568690.2 mRNA upstream 293794 48632171 ~ 48634553 (+) True LOC110494023
XM_036950007.1 mRNA upstream 344680 48579329 ~ 48583667 (+) True LOC110494018
XM_036948351.1 mRNA downstream 39614 48977636 ~ 48980567 (+) True LOC118940102
XM_021568700.2 mRNA downstream 71986 49010008 ~ 49028325 (+) False LOC110494028
XM_036950021.1 mRNA downstream 71986 49010008 ~ 49028325 (+) False LOC110494028
XM_036950022.1 mRNA downstream 71986 49010008 ~ 49120417 (+) False LOC110494028
XR_005036997.1 mRNA downstream 95940 49033962 ~ 49035924 (+) True LOC118940474
TU1668190 other upstream 85 48922807 ~ 48928262 (+) False erc2
TU1668086 other upstream 207103 48693321 ~ 48721244 (+) False bsnb
TU1667106 other upstream 503942 48389082 ~ 48424405 (+) False LOC110494013
TU1666965 other upstream 891764 48030914 ~ 48036583 (+) True glrx
TU1666865 other upstream 1088977 47833580 ~ 47839370 (+) True G1456969
TU1668956 other downstream 500984 49439006 ~ 49439329 (+) True G1458807
TU1669722 other downstream 1243143 50181165 ~ 50183696 (+) True LOC110494957
TU1669855 other downstream 1492785 50430807 ~ 50435706 (+) False atxn7l2a
TU1670065 other downstream 1838507 50776529 ~ 50777072 (+) True G1459769
TU1670568 other downstream 1956918 50894940 ~ 50897444 (+) True LOC110494047

Expression Profile