RNA id: XM_036950022.1


Basic Information

Item Value
RNA id XM_036950022.1
length 4389
RNA type mRNA
GC content 0.41
exon number 12
gene id LOC110494028
representative False

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 48977901 ~ 49120417 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ttccttGTGAATCTGaaagaatgtgtagactttccaagatacagtttatgtcgtcctgtcatcagtcataatgtctcAGAGGCCAACTTATCTGGCATCATATTCATTGAGTACCaatgcatattttcaactggttggattaccgaaatatggttcctttccccccaccttttgatgttcccagactctctatgtttaacaaaggctTTTCAAGAGTCCTTCGgtagagacaagagagaggaaagggagaaaggtatttatggggtggggtcataaaccttacccaaatcccaacgtcatgacactgtcATCTGTTCAGTAAAAGGCTAGTTAACTTAATATGGAGATGTCAttcactgtctctcagtgttctATGTTTGTGGGTACAATGATATTGATGAAGGGAACATAAGTCTTAGACAATATTCGAGATTTAACACATCGCCGTAGTGTGAAATATTATTCACAGACTTTCCTCAGCCTAGTCTGACAGTGTGTCCTGcagtcatcagagagagagagactccgtTTAGTTAAGCTGAGCTGTCTGAATCCTCCTTTTGTCTCTGTAACTCAAGTGTTTCTTCTACATAGTGGGAAGAGTGAACTTACTCTAGCTTCATTCTGTAGACATACACTCACAGGAGCTCAGCTGCTCAGATGAACAGGTCAAAGTTCACCAGCTGAGGTCAAAATACAATGGCAGTACAGTGCTACAGGTTCACAGTTTAGATCCATATACAGTGAGCCTTCTGCAGTCTCAATGCAGGGTAAGAAGACTATTTGAATGGTTGTAAACCACATACTATTGTGCCATGACAACCATGTTCCTCTTGGGATATGTTATCATACTGTGTGTTGTCATAATCTATTACATGAAGCAACTAAGGAATATATTATCTCCTTAATTTCCCATACTGTCGCTGTATGAGGTAATGGACTCAAGATCCGTAAATGGAGGGTATGAGAGTTAGTCAAGTAAGCCCTTTTTCTACTTAGCCAGAGTCAGATGAAATCAGGGAAACTAAGGTGAAGGTAGTTTCGCAAGTTATAACTAGTGCTAACCCTAGTTAGCAAATAAAATCCACAAAATGCCAACCCCTTAATTATTCTATTCTCACAGACCTTCCTCAGCTGAAAGTGAGTTCTGgagtcatcagagagagagagactcagtgcAGCTGAGCTGTCAAACTCAAATGTAATTGAAGCCATGGAATTATGCAACATATCAGCTGTTAAAGACAAATAGACTGAGACAAAAATAGTAACTGAGAAATTATTCTGAATGTTCCTCTGCAACATTAGCCACACTTTCCATATGAGACTGGTTTCTGCTATCTGTGGTTTTCCTGTGAACAAGTTCCACATCTACTTCTCTATTCAAACAATCCTCTCTGACACAGTCACCATCTTCTGTGAAGTCAGACTAACAGTCTGTAGATGTCTGATAAATGGTGTTGTTCATCCCTGATATGGCTGGTCATCTGTTTTTGGTCATCCTCCTTTTCGTCACCTTCCAATACATCGAAGCCCAAGGTCCTTATCCAAAACCAGACATTACAATCACATTTGATGAGGACCTCAACATCATCTGTTTGATTCCTGGATCCTTCAGTCCTGACACCACCTGTAACCTGTATGTTGGAGAGGAGAGTCAGCCATCCTTCACAGTAAAGATCAAGAATCGAAAAGCTACCTCAGCACCCGGACAGAATTTCTGTCAATTCACTCCAAAACATAGTGATCTGATCAGTCGTCTACAGTCAGTGAGGCGTAAGGAGGTGAGCTGTGACTACAGAGTGAGCTCAGGACCTAACTCTCTCTCACCACGCAGTGATGGGTACAGCTTTGCACGTTCAACTGTTAGTTCTACTTGGACCCCAAACACCCCAGCGAGACCAACTACCAATAGTCCCACTAAATGTTTGACCTCTCGTTTGACCCCCAGTACAGCACTGAATCCATCATCAGGTTCGACTGTTAGTTCTACTTTGACCACTGACACTCCAAGTAAAGGTCAAAGCTCCACAGACATTGTTGTGAATTCAAACAGTCAAGAAAGCGTTCCAGATTTGACTGTTACTTCTACTTTGATTACTGGCATCACAGTGAGACCAAATACCAGTTTGACCTCTCCTTTGACCCCCAGCACAGCAGTGAATCCTACATCAGGAGGTCAAAGCTCCACAGAAAGCGTTCTGGCAGGTTTGACTGTTACTTCTACTTTGACCCCTGGCATCACAGTGACAACAACTTAAGATGTATTctcatcacgctgcgccttggtctcatcgctATAACAAACGTGACAATGGCTTCTGGAGTGGGCATGTTCCTGATGGGATTGACAGCTGTCTATCTTTGCAGGAGGACCAGTGAGTACTTCTGATTCTGCATAAATGTTCCCTTGTCATATTAATGTAATTGCCTTTGACATGGGTTAATCTTTCAACTCATTTTGGTCATATTGTGTAGGGTAGGCTATATTCAATCAAAAAATATTGCCTGAATTGTTTTTCAGAGAAACAATTCTCAGAGGTAAGAATTTCCTTGTGAATATGATGCAGATTGTATCAACCTTTAGTTCTgtattgtccatgatgagatgtTCTTACCACAACCTTCTGATACTTTTATGTTGTACAGAcctacagccagacaggatgatcacagtCAATCTATGTTCCTAACAAAGTATCAAGCACTGCACACACTGCTAACACAACTATACACATGCAGGTACAGACACAAATTGTCATTACATGTTCATTTTGTTTCTGTTGTAGGTGATTTGTTGATAGGAACTGTGGGCAGTGCAGGCATGTTTGATTCAAGGGATTCTGGGATCTAATCTCTCATCACCTATGTACCATCCAAATTATTGCCCTCATGTGAGTTTGTAACAGAATGCCTTCAGTACCTGTCTTCCCGACCTGGGACGAGAATTTGTTACCCTCAGCACAATAACACTTTGTCACTCAATGTCAACTGTACTAACATAAAACTAAAATAACTAAAATAAGGTGTAAGTCAGAGCATCTTGAAAGCTTGAGAACAGAGCTGTAAGTCTACAGGATGGTTTGAGTCAGGAGGAGAAGTGTGAAGGTACATTAAGCACAGCAAAGTAACACACACATCCAAACTTACAGTACGTGTGagggcaaacacacacaaacacacatacacacaaactctaACTCAGAGTTGTATAGGCCCTGTTGAAGAAAATGGAAAGTCACCTGAAAATGACAATGTAAGTTAAGAATCACCCACTGTGTTTGGTGACTGTGATCGACTCTCAGTTTTCAGATTGATGTTGCATCATTTTAGAAtacattacatttacagtacTGTAGAATTAATCGACTGAAGTTAAACTGTTTGTTTCTTTTCTCTAGTCTGATACGTACCACGTATACACCTCAATCCCCAACAGACCAGTAACCTCAGCCCAGCAGGCAGTGGTGTACAGTCTTCTGCAGACACATTGACACTACACCTCTGCCATTCTGTAGCTGAATCTTACAGAAACACTCTTGCTTTCAGGATGTCCTTTATTTATTAAACATCATGCTACTGTAAATAAGTATCTAATACATCTACTGCTGTACCGTTTCTACATAAGCGGACGCCATCCCAttgtaaaatgtgtagaactgcaggaaattagctttaaaacgaaccaattctctccgccccatggtaGAATGAGTCGAATTGCAGTACGATAACATTAAAGCCACTAAAAttggggccactaaaatgttttgcctgcGAGGTGGGCAAATCTCGCTTAGGGACCCCAAATTGCTAGAATCTGCTCTTATCTACTGTATCTCACATGGACACCTAGTTTCTGTTACATGCCTATCCATAATGATGGTTACTGTGTTAGTGTTTTTATTCAGGGGTTTTGGAGGGGTCCGGGGCATActcccctttaaaaaaaatgtctcaTTCCCACCCTCCAGTAAATGCTAAATTTATATATATTCTGTCATCTGTGTTAAAAGTTAACATGGGAGATTAGCCTCGTTTTACCTTTCTGATAAGACTCTTGAGGTACAGTAAATTCAAAATCATATGCTTTTTTTGCTCTGTTTGAAATATTCTCCTCTGTAAAACATAAAAGCAAACAGATTAAATTGACTTCAACCATTCCCTCGTCTTTGTTAGTACTTTAAATTTTTCGATCTTGATTATTATAGGTAACAGTACATATTTTTAGCATTATCTATGTTATTTCAGGCCATTGGTGACGATCCAGGTTCTATTTATCGTTAATGTTTTTTTCAGTCCATATAACTACCTTGTCATCGAAACAGACAGTCTGCAGATCACATACAAACCACGTATCCATACCTACaaacaggtgcacacacacac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1668196 lncRNA upstream 6431 48973205 ~ 49003577 (+) True G1458133
TU1668239 lncRNA upstream 59712 48945485 ~ 48950296 (+) True G1458176
TU1668203 lncRNA upstream 161773 48848028 ~ 48848235 (+) True G1458140
TU1668202 lncRNA upstream 162296 48847397 ~ 48847712 (+) True G1458139
TU1668179 lncRNA upstream 176727 48832798 ~ 48833281 (+) True G1458124
TU1668353 lncRNA downstream 21653 49142070 ~ 49142648 (+) True G1458264
TU1668354 lncRNA downstream 26090 49146507 ~ 49168867 (+) True G1458265
TU1668382 lncRNA downstream 61485 49181902 ~ 49183741 (+) True G1458293
TU1668384 lncRNA downstream 64273 49184690 ~ 49194084 (+) False G1458294
TU1668386 lncRNA downstream 64273 49184690 ~ 49194084 (+) False G1458294
XM_036948351.1 mRNA upstream 29441 48977636 ~ 48980567 (+) True LOC118940102
XM_036950018.1 mRNA upstream 71987 48866589 ~ 48938021 (+) False erc2
XM_021568713.2 mRNA downstream 188735 49309152 ~ 49319617 (+) True LOC110494034
XM_036948171.1 mRNA downstream 358499 49478916 ~ 49594500 (+) False cacna1da
XM_036948173.1 mRNA downstream 358499 49478916 ~ 49594500 (+) False cacna1da
XM_036948174.1 mRNA downstream 358499 49478916 ~ 49594500 (+) False cacna1da
XM_036948175.1 mRNA downstream 358499 49478916 ~ 49594500 (+) False cacna1da
TU1668185 other upstream 71986 48928347 ~ 48938022 (+) False erc2
TU1668186 other upstream 71986 48928347 ~ 48938022 (+) False erc2
TU1668187 other upstream 74671 48928347 ~ 48935337 (+) False erc2
TU1668190 other upstream 81746 48922807 ~ 48928262 (+) False erc2
TU1668086 other upstream 288764 48693321 ~ 48721244 (+) False bsnb
TU1668956 other downstream 318589 49439006 ~ 49439329 (+) True G1458807
TU1669722 other downstream 1060748 50181165 ~ 50183696 (+) True LOC110494957
TU1669855 other downstream 1310390 50430807 ~ 50435706 (+) False atxn7l2a
TU1670065 other downstream 1656112 50776529 ~ 50777072 (+) True G1459769
TU1670568 other downstream 1774523 50894940 ~ 50897444 (+) True LOC110494047

Expression Profile