Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00047175 |
| length | 1535 |
| lncRNA type | sense_over |
| GC content | 0.44 |
| exon number | 6 |
| gene id | XLOC_023407 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007135.7 |
| NCBI id | CM002908.2 |
| chromosome length | 42172926 |
| location | 20450027 ~ 20531813 (-) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0022402 | cell cycle process | biological_process |
| GO:0010628 | positive regulation of gene expression | biological_process |
| GO:0006338 | chromatin remodeling | biological_process |
| GO:0000819 | sister chromatid segregation | biological_process |
| GO:0071840 | cellular component organization or biogenesis | biological_process |
| GO:0043044 | ATP-dependent chromatin remodeling | biological_process |
| GO:0009891 | positive regulation of biosynthetic process | biological_process |
| GO:0031328 | positive regulation of cellular biosynthetic process | biological_process |
| GO:1902680 | positive regulation of RNA biosynthetic process | biological_process |
| GO:0006725 | cellular aromatic compound metabolic process | biological_process |
| GO:0051254 | positive regulation of RNA metabolic process | biological_process |
| GO:1903508 | positive regulation of nucleic acid-templated transcription | biological_process |
| GO:0007049 | cell cycle | biological_process |
| GO:0051276 | chromosome organization | biological_process |
| GO:0007064 | mitotic sister chromatid cohesion | biological_process |
| GO:0045893 | positive regulation of transcription, DNA-templated | biological_process |
| GO:0045935 | positive regulation of nucleobase-containing compound metabolic process | biological_process |
| GO:0010557 | positive regulation of macromolecule biosynthetic process | biological_process |
| GO:0046483 | heterocycle metabolic process | biological_process |
| GO:0016043 | cellular component organization | biological_process |
| GO:0071565 | nBAF complex | cellular_component |
| GO:0044424 | obsolete intracellular part | cellular_component |
| GO:0044428 | obsolete nuclear part | cellular_component |
| GO:0070013 | intracellular organelle lumen | cellular_component |
| GO:0044446 | obsolete intracellular organelle part | cellular_component |
| GO:0016514 | SWI/SNF complex | cellular_component |
| GO:0070603 | SWI/SNF superfamily-type complex | cellular_component |
| GO:0005622 | intracellular anatomical structure | cellular_component |
| GO:0005634 | nucleus | cellular_component |
| GO:0031974 | membrane-enclosed lumen | cellular_component |
| GO:0031981 | nuclear lumen | cellular_component |
| GO:0043226 | organelle | cellular_component |
| GO:0043227 | membrane-bounded organelle | cellular_component |
| GO:0043229 | intracellular organelle | cellular_component |
| GO:0043231 | intracellular membrane-bounded organelle | cellular_component |
| GO:0043233 | organelle lumen | cellular_component |
| GO:1904949 | ATPase complex | cellular_component |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00047174 | lncRNA | downstream | 265002 | 20181997 ~ 20185025 (-) | True | XLOC_023400 |
| TCONS_00046274 | lncRNA | downstream | 386977 | 20060691 ~ 20063050 (-) | True | XLOC_023398 |
| TCONS_00046275 | lncRNA | downstream | 387971 | 20060691 ~ 20062056 (-) | False | XLOC_023398 |
| TCONS_00046271 | lncRNA | downstream | 437995 | 20010582 ~ 20012032 (-) | True | XLOC_023396 |
| TCONS_00046853 | lncRNA | downstream | 487145 | 19958916 ~ 19962882 (-) | False | XLOC_023395 |
| TCONS_00046315 | lncRNA | upstream | 635874 | 21137175 ~ 21139396 (-) | False | XLOC_023418 |
| TCONS_00046319 | lncRNA | upstream | 725232 | 21226533 ~ 21228953 (-) | False | XLOC_023420 |
| TCONS_00047176 | lncRNA | upstream | 725232 | 21226533 ~ 21231171 (-) | False | XLOC_023420 |
| TCONS_00046320 | lncRNA | upstream | 727568 | 21228869 ~ 21231171 (-) | True | XLOC_023420 |
| TCONS_00046855 | lncRNA | upstream | 829715 | 21331016 ~ 21369754 (-) | False | XLOC_023421 |
| TCONS_00046285 | mRNA | downstream | 5183 | 20418959 ~ 20444844 (-) | True | XLOC_023406 |
| TCONS_00046284 | mRNA | downstream | 80267 | 20359130 ~ 20369760 (-) | True | XLOC_023405 |
| TCONS_00046282 | mRNA | downstream | 80423 | 20332979 ~ 20369604 (-) | False | XLOC_023405 |
| TCONS_00046283 | mRNA | downstream | 90677 | 20333107 ~ 20359350 (-) | False | XLOC_023405 |
| TCONS_00046280 | mRNA | downstream | 129015 | 20214418 ~ 20321012 (-) | False | XLOC_023404 |
| TCONS_00046293 | mRNA | upstream | 88157 | 20589458 ~ 20599781 (-) | False | XLOC_023408 |
| TCONS_00046294 | mRNA | upstream | 88377 | 20589678 ~ 20599880 (-) | False | XLOC_023408 |
| TCONS_00046295 | mRNA | upstream | 90359 | 20591660 ~ 20641000 (-) | True | XLOC_023408 |
| TCONS_00046296 | mRNA | upstream | 142357 | 20643658 ~ 20658446 (-) | False | XLOC_023409 |
| TCONS_00046298 | mRNA | upstream | 149699 | 20651000 ~ 20652473 (-) | False | XLOC_023409 |
| TCONS_00046277 | other | downstream | 262597 | 20187316 ~ 20187430 (-) | True | XLOC_023401 |
| TCONS_00046272 | other | downstream | 395770 | 20032331 ~ 20054257 (-) | False | XLOC_023397 |
| TCONS_00046273 | other | downstream | 410877 | 20032340 ~ 20039150 (-) | True | XLOC_023397 |
| TCONS_00046264 | other | downstream | 1161259 | 19288654 ~ 19288768 (-) | True | XLOC_023393 |
| TCONS_00046263 | other | downstream | 1530470 | 18910017 ~ 18919557 (-) | True | XLOC_023392 |
| TCONS_00046297 | other | upstream | 146174 | 20647475 ~ 20658668 (-) | False | XLOC_023409 |
| TCONS_00046316 | other | upstream | 638021 | 21139322 ~ 21144300 (-) | True | XLOC_023418 |
| TCONS_00046357 | other | upstream | 1461751 | 21963052 ~ 21963168 (-) | True | XLOC_023437 |
| TCONS_00046358 | other | upstream | 1462749 | 21964050 ~ 21968116 (-) | False | XLOC_023436 |
| TCONS_00046365 | other | upstream | 1569920 | 22071221 ~ 22097763 (-) | True | XLOC_023443 |
