RNA id: XM_036948186.1


Basic Information

Item Value
RNA id XM_036948186.1
length 5603
RNA type mRNA
GC content 0.49
exon number 12
gene id LOC110494957
representative False

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 50181045 ~ 50192699 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTGCAATAAGAAAATAGTTGCCTGCTGTGTCACCAATGTACTGTCTCGGGGGCACGCGATGCTCGTTCCCGTAAATATGAAATGTGTCGTTACCTAGCCTTTGCAAGTGGAGAATTTGCTGTGTAGCCGAATGAGCGTCGCGACCTACTCGCTCTGTCTGATGCGGCGGTTGAGTGTCACAGAAGTCCGGGGATTCACGTTGTTCCATCGGGCCTACTTCCATAATTCTCTCTGTATTGATTAAATACTTCCCTCTGAATAGTTAGACAAATATTATCGCCAAACGCTCAGAATTCTGCTGGAGAAACTGTGAGCGAGACAAATTTGTGTGGATTACCCCCATATTGTTCTCATCGAAAGCAGGAAGGTGCCGTGGAGGGCATAGTGACTTGTCATGAACGAGCCCGTAGAGAGCGGTGTAGTCTCGTTTGACGAGTACGTGCGTCAGAAGGCCCGCAGTGTGCCCCAGCACCGTATGAAGGAGTTCCTGGAGTCTCTGGCCAACAAGGGCCCCGAGGCACTGCAGGAGTTCAGCCAGCAGGACGGTGACACCACCACCATGGTGTACCAGCAGGGGGGAAACTGTGTCTACACAGACAGCACTGAGGTGGCTGGCTCGCTGCTGGAGCTGGCCTGTCCGGTGCAGGTGAACTCTGCACAGATCTCACCCCAGATGGCTGCTGGTGTGCACCAGGGGTCTGAGCAGCAGATACAAGTACAGATCCAGGGACAGCAGGGCCAGACGGTGGACCTCCAGGGCATCCCCACAGCAGCACAGCTGGTCCAGCAAGGAGAGCTCACAGAGGAGCAGCACCAGCAGATCCAGGCCCAGTTGGTGGCAGCAGTGTCAGGAGGTCAACAGATTAGACTACAAAGCGGTCAACAAATCCAGCATATTCAACTACAAGGGGGTCAGCAAATTCAGCTCCAAGGAGGCCAACACATCCAGCTTCAAGGGGACTTACAGGGTGGCCAACAGATCCAACTTCAAGGGGGTCAGCAGATCCAACTTCAAGGGGGTCAGCAGATCCAACTTCAAGGGGGTCAGCAGATCCAACTTCAAGGGGGTCAGCAGATCCAACTTCAAGGGGGTCAGCAGATCCAACTTCAAGGGGGTCAGCAGATCCAACTTCAAGGGGGTCAGCAGATCCAACTTCAAGGGGGTCAGCAGATCCAACTTCAAGGGGGTCAGCACATCCAACTTCAAGGGGGGCAACAAATCCAGCTACAAGGCGGGCAACAAATCCAGCACATTCAGCTACCAGGTGGTCAACATATTCAACTACAGGGTGGGCAGCAGATCCAGTTCCAGACAGTGGAGGCCATGTCTCCTCAGCAACAGCAGGGCTCTCCccgggaggcagagaggagggcgGGTACCAGCGTCCTCCAACCTGCCAAGAAGCGCAAGGTGGACGTCCCCATCCAGGTGTCGTACTCCCTCCCTCAGGGCCAACAGGGCCAGCAGGTGGTCCTGGCCCTCCCCCAGGGGCAGGGGCAGCAACAGCAGTTCCTGTCCCTCCGGCCCGACCTGCTTACTGTGGACAGCACCCACCTGTACAGCACCACAGGTACCATCACAGGCCCTGCCGGGGAGACCTGGACCATCCCTGTGTACTCCGGGGGGCAGCAGGGGGGCGTGCATCACATCGCCATCCCCCAGGAGGCTTACAACACAATGCAGGTGTCCTCCTCTGGTCACCACGACAACAAGGACAATAGGGTGGCCCACTCCTCGTCGTCGGGGACTGGGTCCGTCCAGTCGGGCACCACGGTGTCAGTCTCCGAGACGACGACAAACGACGAAGTGGTGCAGACGCTTTTCCCGGCGCAGTTCATGAACGGGAACATCCACGGCCCTGTGGTGGTGCAGACGGTGGGAGGGGCTTACAACGCCACGCAGCAGCTCCACATCTGGGAcccccagcagcagcaggaaCACCAAGAGCAACAGCTCCATCTACAGGGTCATGTGGAGTCAGAGTCACAGGTGGAGGCCCCCCAGGAGCTGCTGCTGCCTGTCTCCCTGAAGCCTGAGGAGGGCATGGACGTGTGGCGCCTCTGGGTCCAGCGCAAGAACACAGAGCTGGACAAGGAAGAGCAGAACAAGCTGGCGCCCATCGGACGTCGTCAGGCACTGCGCTTCCAGGAGGACCTGGTGTCGAGTGCGGTGGCTGAGCTCAACGTGGCTCTGGCCCTTATGACCCAAGAGGCCCGGGGGTTGGAAGGAGAACAGTTTGAGCCTGATGCCCTCTACTACATCTTCCTGTGTATACAGAAGTACCTCTTTGAAAACGGACGGGTGGATGATATCTTCTCTGACCAGTACTACACACGCTTCTCCCAGTGGTTACACAAAGCCCTGGACGAGTGGAGGCCTGTCATCCATCCACTAGgGTACATCATTCCCAGTCACGTGACAGAGGAGATGCTGTGGGAGTGTAAACAGCTGGGTGCCCACTCACCAGCCACGCTGCTCACAACACTCATGTTCTTCAACACTAAGTATTTCCGTCTAACAACGGTAGAGCAGCACATGAAGGTGGCCTTCTCCAAAGTGCTGAGGCACACGAAGAAGAACCCGTCCAACCCAAAGGATAAGAGCACCAGTATCCGCTATCTGAAGGGCCATGGGCCCTTAGGAACACACCATGCAGGGCAGAAAGTGACCGATGACATGTATGAGGAGCAGGCTGAGGATCCTGAGAACCCTCTGCGATGCCCAATTAAGCTGTATGATTTTTACCTCTTCAAATGTCCCCAGAGTGCTAAGGGGCGTAACGACGCGTACTACCTGACGCCAGAGCCCGTCGTGGCGCCCAACAGTCCCATATGGTACTCCACTCAGCCAATCACGAGTGAGCAGGTGGAGCACATGCTCACGCGCATCATCATGGTGCGGGAGATCCAGGAGGCCATCGCCATGTCGTCGGCCAGCATGCACTgagcaggggaggggaggaggaactGAAATGAACACACTAACCCCCGAAAtcagccttcctctctctcaagCGTTCCTCTTTGTGGTACCTCCTTCACTCAGTAACTAACTCTAAGGACCTCCAGTGGCCTCAGTCTCAACCCATCACACCTGCCAACCATAGGAGTGGGGGAGCGATCGATAGTGTTTACAGAGTGGACTTATGGGCCTTTTTTTAAGGAATAGACTCCTGCGTTTATTCATCTAATGGCAGTTCAATGGCAGTTATGTCACCCTCAATGCTGTTATCTTTTTGGGGATGGTCACACGTGTACGTAAGCCACCACTTCACTTAACCCCCCACCTCACTTCACCATAGAATTGTTTCCTGGACTGACGAGACGAGTGAGATGGATTTTGACAAAGTCACTAAATCAGAGCTCATCATGTACTCCTGTAGGCTGTTGCAGCCCCCAATAAAGATGAAATGGTCAGAAATGGATGGTGAAATATCGGATATATATTCAGtcatataaatatattatacacatagtgacttcagaaagtattcgtaccccttgacttagtccacattttgttacagcctgaattaaaacgTTTATTTTTAATCTCAcccttctacacacaataccccataatgacaaagtggaaacatgtttttagaaatgtttgcacatttattgaaaattaaatacagaaatatctcatttacattaagtattcacacccgagtcaatactttttctaggcacctttggcagtgattacagctgaggGTCTTTCTGGGTAAAAGGCGCTGCGTGGTCAAGCCATACAGCATTTACTGCGATGCGGCCTCCGCAGAAGTCAGAACAAACATACTTTTTGCGCttcgctgagctgttgtcaaggaagtgagtttgtgtttatacaggacctctcgcccccacctaccgtcaaatcagtcatgtcaatgcggagccctccgcattgttaaAACATTTTGAGAGGCGCGTAGCGATGCGGTACGGAGCTTGATTTGGCCTCTGCACGCTTCAGGAGACTCCGCCTTAGCATCACACCCTCCATACAAACCCTGACCACATTTTTGGATCAAGTGTAATTTGGCTttaagtctttaagagctttccacacctggattgtgcaacattcgCCCATTGTACTTTTCAAAATCATTCCAGCTCTGTCAAATTGctggacagccattttcaggtcttgccgtagatttaagtccaaactgtaactcgGACATtcgggaacattcactgtcttcttggtaagccataacaaatgggttgaatacttattgactcatgatatttctgctttttaaatttgtaaaagtttataaaaacataattacactttgacattttgtgtgtgtgtgtgtgtaggccagtgacaaatctCAATGTAATAATTTTAAATTCAGATTGTTAccatgtggaagaagtcaaggggtgtgaatactttctgaaggcactgtacactccCCTAAGTATTTAGTTGGATAATGATGCTAAAAACCAAAAATGATTCATTTGGCTCTGTattccagcattttggatttgagatgaaATGTTTAATTTGAGTGTATTTTCATACATAGTGCTTTAATTTCTAAACAGTGAAacatgtatctagtccccccatttttgaaggtgtcataagtattttGACAAATTCACTTGTAGTATTAAAGTAATCAAAATTGTAGTATTTGGTCgcattcctagcatgcaatgactacaagTGACGACAAACTTCTTGGATGCTTTTgcggtttgttttggttgtgttttcagattgttgtgcccaatagaaatgaatggtaaatgtaTTGTgatattttggagtcacttttattgtaaataagataaCGTTTCcaaacacttctacatgaatgtggcTGCTACCATAATTctggataatcatgaatgaattgtgGATAATGAGTGAGAAGGTTTAGgcacaaagatcatacccccaagacatctGAACCTCTCAACATGACCAAtaagaggttagcatttttgttgttgttgaggagcATCGTTCACTCATTATTCAGGATTAATTCATGATtgtccataatcatggtagcatccacaataATGTAGTGTTAACAAACATATTTTATTCTTACTTACAATAAaaggtgactccaaaatgacacaatacattattcaccattcatATTGGGCAAAATATaatccgaaacacaaccaaactgcaaatgcatccacaAGTTTGTAATCACGTATGAAAATACCTTCAAATAAAAGGTGgcattctgtactgtcgcctcataaCATTTGATGTCATCCAAGATGCTAGAGTATAGGGCCAAATGTACatattttagcttcactgtccaaataaatacgtagGGGAGTGTATATGGAAATGTACCACGTTTAACATGTTAGCCCTCACAGGGACCCTCCTGTGCCTCTTGTCCTCTAAGCTCTCaggttccagacaggacaggagccaAGAGCAGAGTGGATTACACACCAACAGACATTTAATGGGAACTCTGCtctgcttttctttttttttacatgtatttttattgGCATTTATGATCTCCTGTATGTATTGATATTCTAGTGGTGTTGGAGGCTAAATAAGAAagtatgttttttttccccccaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1669730 lncRNA upstream 4090 50176692 ~ 50176955 (+) True G1459480
TU1669728 lncRNA upstream 6222 50174577 ~ 50174823 (+) True G1459478
TU1669726 lncRNA upstream 7845 50172992 ~ 50173200 (+) True G1459476
TU1669716 lncRNA upstream 17663 50163048 ~ 50163382 (+) True G1459468
TU1669711 lncRNA upstream 22755 50158073 ~ 50158290 (+) True G1459463
TU1669740 lncRNA downstream 18036 50210735 ~ 50210990 (+) True G1459490
TU1669742 lncRNA downstream 20532 50213231 ~ 50213462 (+) True G1459492
TU1669743 lncRNA downstream 21054 50213753 ~ 50213953 (+) True G1459493
TU1669744 lncRNA downstream 21337 50214036 ~ 50214411 (+) True G1459494
TU1669769 lncRNA downstream 104764 50297463 ~ 50358790 (+) True G1459518
XM_021570293.2 mRNA upstream 523078 49604663 ~ 49657967 (+) True LOC110494954
XM_036948171.1 mRNA upstream 586545 49478916 ~ 49594500 (+) False cacna1da
XM_021570327.2 mRNA downstream 4404 50197103 ~ 50207320 (+) True LOC110494976
XM_021570338.2 mRNA downstream 29942 50222641 ~ 50229675 (+) True LOC110494984
XM_036947899.1 mRNA downstream 40948 50233647 ~ 50239667 (+) False rhoa
NM_001165060.1 mRNA downstream 40967 50233666 ~ 50239593 (+) True rhoa
XM_021570312.2 mRNA downstream 60108 50252807 ~ 50259008 (+) True zgc:112334
TU1668956 other upstream 741716 49439006 ~ 49439329 (+) True G1458807
TU1668189 other upstream 1140689 48933340 ~ 49040356 (+) True erc2
TU1668185 other upstream 1243023 48928347 ~ 48938022 (+) False erc2
TU1669855 other downstream 238108 50430807 ~ 50435706 (+) False atxn7l2a
TU1670065 other downstream 583830 50776529 ~ 50777072 (+) True G1459769
TU1670568 other downstream 702241 50894940 ~ 50897444 (+) True LOC110494047
TU1670644 other downstream 887433 51080132 ~ 51090889 (+) False G1460249
TU1674769 other downstream 3981315 54174014 ~ 54189617 (+) True G1464092

Expression Profile