RNA id: TU1669722



Basic Information


Item Value
RNA id TU1669722
length 879
RNA type TUCP
GC content 0.55
exon number 5
gene id LOC110494957
representative True

Chromosome Information


Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 50181045 ~ 50192699 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GTGTAGCCGAATGAGCGTCGCGACCTACTCGCTCTGTCTGATGCGGCGGTTGAGTGTCACAGAAGTCCGGGGATTCACGTTGTTCCATCGGGCCTACTTCCATAATTCTCTCTGTATTGATTAAATACTTCCCTCTGAATAGTTAGACAAATATTATCGCCAAACGCTCAGAATTCTGCTGGAGAAACTGTGAGCGAGACAAATTTGTGTGGATTACCCCCATATTGTTCTCATCGAAAGCAGGAAGGTGCCGTGGAGGGCATAGTGACTTGTCATGAACGAGCCCGTAGAGAGCGGTGTAGTCTCGTTTGACGAGTACGTGCGTCAGAAGGCCCGCAGTGTGCCCCAGCACCGTATGAAGGAGTTCCTGGAGTCTCTGGCCAACAAGGGCCCCGAGGCACTGCAGGAGTTCAGCCAGCAGGACGGTGACACCACCACCATGGTGTACCAGCAGGGGGGAAACTGTGTCTACACAGACAGCACTGAGGTGGCTGGCTCGCTGCTGGAGCTGGCCTGTCCGGTGCAGGTGAACTCTGCACAGATCTCACCCCAGATGGCTGCTGGTGTGCACCAGGGGTCTGAGCAGCAGATACAAGTACAGGTGCAGATCCAGGGACAGCAGGGCCAGACGGTGGACCTCCAGGGCATCCCCACAGCAGCACAGCTGGTCCAGCAAGGAGAGCTCACAGAGGAGCAGCACCAGCAGATCCAGGCCCAGTTGGTGGCAGCAGTGTCAGGAGGTCAACAGATTAGACTACAAAGCGGTCAACAAATCCAGCATATTCAACTACAAGGGGGTCAGCAAATTCAGCTCCAAGGAGGCCAACACATCCAGCTTCAAGGGGACTTACAGGGTGGCCAACAGATCCAACTTCAAGG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1669730 lncRNA upstream 4210 50176692 ~ 50176955 (+) True G1459480
TU1669728 lncRNA upstream 6342 50174577 ~ 50174823 (+) True G1459478
TU1669726 lncRNA upstream 7965 50172992 ~ 50173200 (+) True G1459476
TU1669716 lncRNA upstream 17783 50163048 ~ 50163382 (+) True G1459468
TU1669711 lncRNA upstream 22875 50158073 ~ 50158290 (+) True G1459463
TU1669740 lncRNA downstream 27039 50210735 ~ 50210990 (+) True G1459490
TU1669742 lncRNA downstream 29535 50213231 ~ 50213462 (+) True G1459492
TU1669743 lncRNA downstream 30057 50213753 ~ 50213953 (+) True G1459493
TU1669744 lncRNA downstream 30340 50214036 ~ 50214411 (+) True G1459494
TU1669769 lncRNA downstream 113767 50297463 ~ 50358790 (+) True G1459518
XM_021570293.2 mRNA upstream 523198 49604663 ~ 49657967 (+) True LOC110494954
XM_036948171.1 mRNA upstream 586665 49478916 ~ 49594500 (+) False cacna1da
XM_036948173.1 mRNA upstream 586665 49478916 ~ 49594500 (+) False cacna1da
XM_036948174.1 mRNA upstream 586665 49478916 ~ 49594500 (+) False cacna1da
XM_036948175.1 mRNA upstream 586665 49478916 ~ 49594500 (+) False cacna1da
XM_021570327.2 mRNA downstream 13407 50197103 ~ 50207320 (+) True LOC110494976
XM_021570338.2 mRNA downstream 38945 50222641 ~ 50229675 (+) True LOC110494984
XM_036947899.1 mRNA downstream 49951 50233647 ~ 50239667 (+) False rhoa
NM_001165060.1 mRNA downstream 49970 50233666 ~ 50239593 (+) True rhoa
XM_021570312.2 mRNA downstream 69111 50252807 ~ 50259008 (+) True zgc:112334
TU1668956 other upstream 741836 49439006 ~ 49439329 (+) True G1458807
TU1668189 other upstream 1140809 48933340 ~ 49040356 (+) True erc2
TU1668185 other upstream 1243143 48928347 ~ 48938022 (+) False erc2
TU1668186 other upstream 1243143 48928347 ~ 48938022 (+) False erc2
TU1668187 other upstream 1245828 48928347 ~ 48935337 (+) False erc2
TU1669855 other downstream 247111 50430807 ~ 50435706 (+) False atxn7l2a
TU1670065 other downstream 592833 50776529 ~ 50777072 (+) True G1459769
TU1670568 other downstream 711244 50894940 ~ 50897444 (+) True LOC110494047
TU1670644 other downstream 896436 51080132 ~ 51090889 (+) False G1460249
TU1674769 other downstream 3990318 54174014 ~ 54189617 (+) True G1464092

Expression Profile