RNA id: XM_021570338.2


Basic Information

Item Value
RNA id XM_021570338.2
length 1641
RNA type mRNA
GC content 0.48
exon number 3
gene id LOC110494984
representative True

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 50222641 ~ 50229675 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAATTTGAGTCAGCTTTTCTGGAAAGTCCTCTACTTGGAAGTCATCAGCTGCGCATTACTTGTGAAGCCAGCTGGGCCGCTTCCATAGCCCTGTCGCGCGGCAGAGAAGTAAACGGAGCACGTATGGAGCCAATCGAAACGCAGCGCAGGTCATAAGCGCAGTTCCGAGAAACCGAGTGGGCAAAATTGGCCCCTGCCACCGCCGCTGCTGAAATACAAAGCTATTCTTAGAATTAGATTCCTAGAACTTCCGTCAACCCGCAAAACTGAATTTACAGGAGAGGCGTTTTCTCACCGTCTTTCTGTAGAATAAAACATAGAACAGTTGTTTCTGGCGAGTGGATCACTGCGTTGGACCTAGCCTATCTATCTCTGCCAATGTTGACACTGACACATTTCCTTATCACCAAAAGAAGttaagattttttatttttggcAAAATATCAGTATAGTCGGTTGAGATaatgagaattttttttttgtcGGATTATTGGCGCCATGACAGCATGAACTCAGCGACTGTTCCTACAAATTAAGAATCACTGGATCTGTTAAATAATTATATAGCCTATCACATTTTTTCAACTGGATTGAATTTCATTATGATTGTGTGTTCAAAGGGCTCTGTTGCCAGGGCCACCTTCGGATATGATTGTCAGGACGATGAGCAGCATGCAGCAGGATCATGGTGAGAGaggagggtcatgtcagaatCCAGCGGCCCCTCTCTACGACTCTACAGAGGACCTCTGCAGCATAACCAACACCTTCCAGTACCTGCAGAACTCAGGTTGGTACTGGGGGTCTATTTCAGCCAGTGAGGCTCGAGATGCTCTCCTGAAGATGTCAGCGGGAACCTTCCTGGTACGCGATAGCAGCCACCCCCTCTACATGCTGACCCTGTCAGTGAAGACGGCCTTTGGCCCCACCAATGTACGCATTGAGTACATCGGGGGTCGGTTCCGGCTGGACTCCAGCTCTCCAGGCCCCCCTCACTTGCTGTCCTTCCCTGATGTCTGCAGCCTTGTACAGCATTACGTGGAGGACACTCCTCAACCTAAAGCCAAACCCAGGTCGCCCCAGCCCGCAGTGAAGGGCAATGCAGTACTGCTCAAGCTGCTGCGTCCCCTACCCCAGGCCTTCCCTTCCCTCCAGCACCTTACCCGCCTCACCATCAACCACCACACTGACTGTCCGTACCAGCTGCCCCTGCCATGCCCGCTAGTGCGCTACCTTCAGGACTACCCCTTCCAGGTATGACGTATGATGGTCATCTGGCAACCATCCCCGCCCAAGGAAGGGCACACAGCAGCTCTAGCGTCCTCCCATTGAGGGCCAGAGGTTATTACCTTTTGCTTATAGGGTCAGAAATGGCCTCAGCTCAGCCGGACAGTGGCACCATGGGAAGCAATGTGCAGTGTTGTCTGGGAAGAGTAGAACTATACACATCTCACTGGGCCTTGGGCTTCtcatacagacacacatgaaCCAGACTCCTAAAATGaaatttctatcaacatttaTACTGTTTACTTTAATATTTTGTCAAGGATTTTATAAGAGTTAAATTATATGGATTAATTGTCAATGAAtgcaaataaatatattttatagtaaAAATGGTAATAAAAGATGTCTCTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1669744 lncRNA upstream 8230 50214036 ~ 50214411 (+) True G1459494
TU1669743 lncRNA upstream 8688 50213753 ~ 50213953 (+) True G1459493
TU1669742 lncRNA upstream 9179 50213231 ~ 50213462 (+) True G1459492
TU1669740 lncRNA upstream 11651 50210735 ~ 50210990 (+) True G1459490
TU1669730 lncRNA upstream 45686 50176692 ~ 50176955 (+) True G1459480
TU1669769 lncRNA downstream 67788 50297463 ~ 50358790 (+) True G1459518
TU1669761 lncRNA downstream 74456 50304131 ~ 50310362 (+) True G1459510
TU1669818 lncRNA downstream 139374 50369049 ~ 50369289 (+) True G1459562
TU1669824 lncRNA downstream 151099 50380774 ~ 50381005 (+) True G1459568
TU1669833 lncRNA downstream 161592 50391267 ~ 50391700 (+) True G1459570
XM_021570327.2 mRNA upstream 15321 50197103 ~ 50207320 (+) True LOC110494976
XM_036948186.1 mRNA upstream 29942 50181045 ~ 50192699 (+) False LOC110494957
XM_021570299.2 mRNA upstream 29942 50181050 ~ 50192699 (+) False LOC110494957
XM_021570293.2 mRNA upstream 564674 49604663 ~ 49657967 (+) True LOC110494954
XM_036948175.1 mRNA upstream 628141 49478916 ~ 49594500 (+) False cacna1da
XM_036947899.1 mRNA downstream 3972 50233647 ~ 50239667 (+) False rhoa
NM_001165060.1 mRNA downstream 3991 50233666 ~ 50239593 (+) True rhoa
XM_021570312.2 mRNA downstream 23132 50252807 ~ 50259008 (+) True zgc:112334
XM_036948192.1 mRNA downstream 33672 50263347 ~ 50280709 (+) False LOC110494960
XM_036948191.1 mRNA downstream 33673 50263348 ~ 50280709 (+) False LOC110494960
TU1669722 other upstream 38945 50181165 ~ 50183696 (+) True LOC110494957
TU1668956 other upstream 783312 49439006 ~ 49439329 (+) True G1458807
TU1668189 other upstream 1182285 48933340 ~ 49040356 (+) True erc2
TU1668186 other upstream 1284619 48928347 ~ 48938022 (+) False erc2
TU1669855 other downstream 201132 50430807 ~ 50435706 (+) False atxn7l2a
TU1670065 other downstream 546854 50776529 ~ 50777072 (+) True G1459769
TU1670568 other downstream 665265 50894940 ~ 50897444 (+) True LOC110494047
TU1670644 other downstream 850457 51080132 ~ 51090889 (+) False G1460249
TU1674769 other downstream 3944339 54174014 ~ 54189617 (+) True G1464092

Expression Profile