RNA id: XM_036948192.1


Basic Information

Item Value
RNA id XM_036948192.1
length 4705
RNA type mRNA
GC content 0.48
exon number 13
gene id LOC110494960
representative False

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 50263347 ~ 50280709 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTAGATACATTCTAGAAATCAGTGATTAATTGTATCAATGGCAGGGGAGGAACATTACTTGCATGTGGTAAAACAACAAAATCATTATAAAGCAcataaaaaagtatatatttataATTGGGAAATAGTTTCCAATCATGTCCTCCAATGGAACATGATAGGATGGACAGTCATAATTATGGCCCTATATCTGATACACATGTGAAGCAAGCTTGCATACGGTGGAATTATATTGCAAAACAACAAAGAACGATAGCTGTCGGAGGAGGCTTCTCGTCCTCAGCCATTGATGAATTCGCCTGAATACCAAAGAGGCGTGCCCGCTTGTGTGTTATTCTGCGTGGGTGCGTGCGCGCCCCCTACTGTGTTTTCGGGACAAGCTTGAAACGGTCAAGTCGCAAATTGGATTTTACAATGTAAATAGAAAGTAGGAGAATCATTCGCGAAGTCGTAAATATCTATTTAAAATTACCTTAGACTGGGTACATCAGTTATTTACTGAACCAGCTAATTGTGCATTTTCTGAAACAGTCATATCGGTGTTTTTAGGAATTACAAGGGATTTAAAACAGAATAACTATGTATCGGTCTCTGTATGCTTTCCGATCCGCGGAGCCCAACTCGCTCCACTTCGGGGCCGGGGAGGGCTTTCTGATCCTGGAACGCAGCAACAAACACTGGTGGCTCGGATCGCGCTGCAGTTCGGGCGAAACCGGCTACGTTCCCGCTTCTTACATTGAAAGGATTCAGGCTCCGGAGCAGGATGAAGTGTTACAGTCTATCGACAGGGCCATCGAAGGGATCCATAACGTGGCCATGAAGAACGGGGGCAAATACAACCTGGAGCAGCGAGACGTGCTACAGAAGTTGATCCATCACAGGAAGGAGACCCTGTCAAGGCGAAGTCCAACTCCATCCAGTCACAAGCAGGGCCTGCCCTCATCTACCAGCGAACTGTCCCTCAGCCACACCCCTCAACCACCCAATGGTGTCAGCCGCACCCTGTCAGAGAGTACCGACAATGTTCAAGGGCTTTACCAGGTGCCTCCTCAGCCCCGCCGTGCAGCACCCataacccctccccctcctgaGAAACAAAGAGCCAGCCGACGCCCAGaattttccattcctcctcctcctggcccTACCCCTCCTGCCGGGACTGGCCTGTCCCCCTCTGTCAGCTCCGCCTCCCTGGACTCTGTCTCCTCCCACTCGGTGGTGTCCTCTGATGTCAGCCTGACAAGCGTTGCCAGCACCCCGCCCCCAGTGCCAAGCCGTGTGAAGCCCCCACCCCATCCTCCAGACGACCtgcccccctctaccccctctccccaGCCAGTTCCCTCAAAGAAGGGCCATGCCCCCCAACCTCCACCACCACAGCCCACTCCACCACCACAGCCCACTCCACCACCACAGCCCAGCACCGAGGACCAAACAGAAACCGACTGGCCTCTTGCCCCGCCCTCTGTCGCTGAAAGCACCCCCGGAAGCCCCTCTCACTCAGAGCCTGTTCCCGGGACAACAGGGGCGGAGCTTATTGAGCTGGTTCGGAGCAACACGGGCCTGAGTTACGAGCTGTCTCGGGTGGCGGTGGGTGTGGTCGTGGGTCACCTGCAGACCACCCTTCCTCAAGCCTCCTCTGCCTTAGAGAAGGTCCTCCTCTCATTGGTAGAGAGCAAGGATCAGAGATCTGCGTTGCCACAGGGACAAGTGTGTCACGATGAACAGCGCCTGGAGGTCATCTTAGGCGACCTCGCCCGTCACGTTGACGACTCTCAGCAGCGCAGCTGGGCCCTTTACGAAGACCACTCCCTCATCGCATGTTACCTGGAGGAGCTGCTGAAGATACTGaCGGATGCAGATCCAGTGGTGTGTAAGAGGATGTGCAGGGTCAACCACTCTGAGCCAGTGCTGTCACTAGTGTCCTACTATCAGATGGTAAGAGATTCTACTCCACCACCGTCGCTACTGTTCTCCTGTTGCCCACCCAAGAGGACCACACTATTGGAGCACCGAGTGTCTCTACGCCTGCTGTTGCTCAAGGTGTTTGGGGCGATGTGTAGCCTGGACTCTGCCCTCATCTCCACCCTCCTCAACTCCATCCTGCCCATGGAGCTGGCCAGAGACCTGCAGACTGACACACAGGAGCATCAGAAGATGTGCTACACAGCCTTGGTCCTGACTATGATCTTCTCTATGGGGGAGCAGGTGCCATATCACCACTATGAGCACTTAAACGCTAGCTTTGTTCAGTTCCTGCTAGATGTGGTAGAGGAGGGTCTTCCCTCTGACCCCACGGAACAGCTCCCTGACCTCTGCGTCAACCTCATCCTGGCCTTCAACCTGCACCTCACAGtgcccAGCAGCAACGTGATAATGCAGACTTTGATCAAGAAAAACGTGAAGCTCTTTTCTGAGAAAATAGTGCTGCTACTAAACCGAGGAGatgACCCTGTGTGTGTCTTTAAACATGCTCCCCCTGCCCCACACTCAGTTCTTAAGTTCCTGCAGGATGTCTTCGCCAGCAGAGACTCTGCTAACATCTTCTACCGCGCGGacatgatggtgatgatagaTATCGCTGTTCGATGCATCTCTGACCTCTCACCTGGGGAAAAGtTGAGAATGGAGTACCTCGCGCTCATGCACTCCGTCATGCGCTCCACAGACTACCTGGAGCACCGGCACCGCCTCTCCGACCTGCAGGGCGCGCTGCAAAGGATTCTAAGAGAGGACGACTCGGGAGCGGACGAGGGCGGGGCCACAGCCAAACAGATGGATAAGCTAATAGTGCAGGAGATCTACAAGGAATTCCCTCAGATCAGAGACACCTAGGACGACTGAATATGACAGCGGTGCTGTGCACTCATGAGCCGGTAGTCTGTCTCCTTTATTCCCGAAAGATGGTACTGTGGCGCTTCCTAGGGTTGACGAAGGACTGTAGTCAGCTACTTAGTTCCTGAGTGTTACAACCCTCCGTCACACTTTTTACCATTATGACATAAGAGATGGCATGAGCACCAGCTGTCACGGCGGTTTATTGCGTCCTTCGTGTCATGATTGTGATAATGCTATGTAGCTCTTATGTCTGAGGATTCAAGTGAAGAGTTACCCAACAGCATACTGCATTGTGCTTTAAATGTGCTCCCTTGTACTGAGGGACCAAACTGCGGTGTGAACGGAGGGTCTTGTAACCCTGGGACTGGTGTGAACGGAGGGTCTTGTAACCCTGGGACTGGTGTGAACGGAGGGTCTTGTAACCCTGGGACTGGTGTGCTGTATATGTCTTCTTACTTTCAGTCTATTCATGTGTCTTGATCACTCACTCTTATTCCTCACCACCTGGCATGGCCTCACAGTATGTTACGAAGACAGTTCAAAGAAAAGACAAATTAGGTGATTATACTGATAACAAAACATTCTGGTCCAGTTtgctagacacagattaagccaagTTCTGCATTGAAAAGCGTGCTCAATGGAGAATCTACATtaactaggcttaatctgtgtcctggAAACCAGACCTCTGACAATAATACATTCTAGGCTTTGAGGTTAGTTTAGTACTCACTATTTATTGCAATGGCAATGCTGCTACATGAGCCTCATTTACCTTAAAATCTATGGCTGTGATTCTCTGACTGAGCACAACTTGTTACCTTGCTTTCGCCATTACTAGTGACCTTGCTTTCGCCATTACTTGTGACCTTGCTTTCGCCATTACTTTTTACCTTGCTTTCACCATTACTTGTTACCTTGATTTCACCATTACTTGTTACCTTGATTTCACCATTACTTGTTACCTTGCTTTCGCCATTACTTGTGACCTTGCTTTCTTCCCTACACTTTATCTACAATAACCTCCACTCTAGGTATGGCTAAAATATGACATGCTCTAAATTTGTCTCAACCAGACCACTcctactctgctctgctgcttGTGCTGTAGATGGAACGTAATGGTACTGTAATAACAAGCTGTAACACGCTGCTTCTACATACTAAGCCTTGACTAACTTCCTATATAGCTATGGCTCTCTGAAATGGAATGTAGTTATTTATTCATAGGAAATAATAAGGAATTGATAAGATTCGATTGgtcagtttttttgttgttgttttttttaaatgtagtctGGGGTTAACTAAGGGACTTGTCACcaagattgattgattgctttgcCCTGGTCATTTTGGTCTGAAATCTATCAGTTACCACAGTACGGTGTCTCTCCATCagagctctttctctctttgtgtcAGTTTATTTTTACTTGGCTCTGTTAGAGCTAATAGGGGAAGTGTTTATGTGGCAAAATAGTCGTGGCCGTCATGATGCACGTATACCTTTTAACACACACTTAAAAGGAAGTGTTTACACATATAAACATATATACCAGAGTGTGTTTTCTCTGACGTATGTGTTTTTATTATCCGGTGTTAATGCATAAAGCTATGCATGTGCGTGTCTATGTACGGTTTGTGTATATTTTCGTAACTATGTATGGTTTTATCATCGTCCCTGTAGGTTTGAGCCTCCATTGTCCCTTAAGGTACGACTGTGTTATAGCAATAAAACCAACTGAACTATATTTTCCCAATTAAATATATCTGAAATGGTTGTTCAGAGAGGGGTGACGCtacaaagtgtattttcttaatGTTTACAATCAACTAATAAACATCTCAATGAACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1669744 lncRNA upstream 48936 50214036 ~ 50214411 (+) True G1459494
TU1669743 lncRNA upstream 49394 50213753 ~ 50213953 (+) True G1459493
TU1669742 lncRNA upstream 49885 50213231 ~ 50213462 (+) True G1459492
TU1669740 lncRNA upstream 52357 50210735 ~ 50210990 (+) True G1459490
TU1669730 lncRNA upstream 86392 50176692 ~ 50176955 (+) True G1459480
TU1669769 lncRNA downstream 16754 50297463 ~ 50358790 (+) True G1459518
TU1669761 lncRNA downstream 23422 50304131 ~ 50310362 (+) True G1459510
TU1669818 lncRNA downstream 88340 50369049 ~ 50369289 (+) True G1459562
TU1669824 lncRNA downstream 100065 50380774 ~ 50381005 (+) True G1459568
TU1669833 lncRNA downstream 110558 50391267 ~ 50391700 (+) True G1459570
XM_021570312.2 mRNA upstream 4339 50252807 ~ 50259008 (+) True zgc:112334
XM_036947899.1 mRNA upstream 23680 50233647 ~ 50239667 (+) False rhoa
NM_001165060.1 mRNA upstream 23754 50233666 ~ 50239593 (+) True rhoa
XM_021570338.2 mRNA upstream 33672 50222641 ~ 50229675 (+) True LOC110494984
XM_021570327.2 mRNA upstream 56027 50197103 ~ 50207320 (+) True LOC110494976
XM_021570329.2 mRNA downstream 2388 50283097 ~ 50289549 (+) True slc25a20
XM_021570324.2 mRNA downstream 9569 50290278 ~ 50301818 (+) True prkar2ab
XM_021570341.2 mRNA downstream 101363 50382072 ~ 50386942 (+) True LOC110494986
XM_021570316.2 mRNA downstream 119638 50400347 ~ 50402864 (+) False LOC110494971
XM_021570317.2 mRNA downstream 119638 50400347 ~ 50402864 (+) False LOC110494971
TU1669722 other upstream 79651 50181165 ~ 50183696 (+) True LOC110494957
TU1668956 other upstream 824018 49439006 ~ 49439329 (+) True G1458807
TU1668189 other upstream 1222991 48933340 ~ 49040356 (+) True erc2
TU1668186 other upstream 1325325 48928347 ~ 48938022 (+) False erc2
TU1669855 other downstream 150098 50430807 ~ 50435706 (+) False atxn7l2a
TU1670065 other downstream 495820 50776529 ~ 50777072 (+) True G1459769
TU1670568 other downstream 614231 50894940 ~ 50897444 (+) True LOC110494047
TU1670644 other downstream 799423 51080132 ~ 51090889 (+) False G1460249
TU1674769 other downstream 3893305 54174014 ~ 54189617 (+) True G1464092

Expression Profile