RNA id: XM_021570329.2


Basic Information

Item Value
RNA id XM_021570329.2
length 1785
RNA type mRNA
GC content 0.47
exon number 9
gene id slc25a20
representative True

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 50283097 ~ 50289549 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCAAAGCAATTGTGTAACAGACAATTCGGTCCGGGCATATATCTGGGTGAAAGGTCCACATTGGATGACACGACGGTGGCTGTCAAGAAATATACCTTTCATTTGAACCGATAGTGGTGACACAGGGTTAACCTGTTAGGTAGATAGTTATTTTCCCAACTTGTTACGGATCGTAACAACGCAACATTTTGCGTTTTTCTTTTCTCGTTAGCTGTCTTTTCTTGAACAGAACCATGTCTAAACAGCAGGCGATAAGTCCAGGGAAGAACTTCTTTGCTGGGGGCTTTGGGGGTGTCTGCTTGGTCTTCGCTGGACATCCACTTGATACCATAAAAGTGCGCATTCAGACCATGCCTGTGCCCGGCCCTGGCGAGAGCCCCCTGTATAGAGGCACTTTTGATTGTTTCAAACAGACCCTTGCCAAAGAGGGGTTCAAAGGCCTGTACAAAGGCATGGCAGCCCCTATCATTGGAGTCACACCCATGTTCGCTGTCTGCTTCTTCGGCTTTGGCCTGGGCAAGAAACTACAACAGAAAACCCCTGACGATGTCCTTACGTATCCACAGCTGTTTGCTGCCGGCATGCTGTCAGGCGTGTTCACCACAGCCATCATGGCCCCTGGAGAACGTATCAAGTGTCTCCTACAGATCCAGGCGGCCAAAGGGGAGGTGAAGTATGCTGGGCCCATGGACTGTGTGAAGCAGCTGTACAAAGAGAGTGGGATCAGGGGAATCTACAGAGGCACTGCTCTCACCCTCATGAGAGACGTGCCAGCCAGTGGGATGTATTTCATGACCTATGAGTGGTTGAAGCGCCTCCTCACACCAGAGGGCAAGAGCCCCAATGAGCTGAGTGTTCCTAGTGTTCTATTCGCTGGAGGGATGGCAGGAATCTTTAACTGGGCCGTGGCCATTCCCCCTGATGTACTCAAGTCTCGCTTCCAGACAGccccTGAAGGGAAGTACCCTAATGGTTTCCGGGATGTTCTACGAGAGCTACTGAGGGAGGAGGGCGTGGCCTCTCTGTACAAAGGCTTCACCGCTGTCATGCTCAGAGCTTTCCCTGCCAATGCAGCTTGTTTCCTTGGGTTTGAAATGGCCATGAAGTTCCTGAACTGGGCAGCACCCGGTCTGTGATCCCTGTCCAAGCCCCAGGCGTAGACGTCAGAGACAGAACTCACTAACACAGTGGAGACCGACAGTACTCACATACATACACTTACGCAGAGGTACACATTGAACGTCTGACTGGCATACGGACTGAGAAAGACGCACACATTGTAGAGGTGGACAGAGGGGGGGAACGCACACATTGTTCTCACTCCTTGGTGTTTTACTTGCATTTGtttagttttttgtgtgtttttaattAGAACATTTGTGAATTGAACATGTGCCTTTACTTACTCAGTGAGTCTGCATATCAGGGAATAGGTACATTTTCACAGGGTGCGTATAATGTGTGTTAGTAtgccgtgtgtgtgcgtgtgtctctctgttgtgtgtctctgcgtgtgtgtttaAACACAAAACATATGGCTTTTAAAACATACCAGTACATTAAAACATCCCTGAATAGTCTCATTCCAAACTGTGATCCAGTAACCAAATCACTGAGTTGGAAATTGATAGTAGATTTATTAATGAATTAATGAATAATACTTTTCTCCAAGGTTGTTGCAGATGTAACTTATGCCACAACATGGAGAACCATCATTGGGCCATTGTCTCATGTTTGTATGTGTCATTAtgtatgtaaataaataaataaatacaatgaaaTCAT

Function

GO:

id name namespace
GO:0045859 regulation of protein kinase activity biological_process
GO:0006810 transport biological_process
GO:0005952 cAMP-dependent protein kinase complex cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0008603 cAMP-dependent protein kinase regulator activity molecular_function

KEGG:

id description
K15109 SLC25A20_29, CACT, CACL, CRC1; solute carrier family 25 (mitochondrial carnitine/acylcarnitine transporter), member 20/29

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1669744 lncRNA upstream 68686 50214036 ~ 50214411 (+) True G1459494
TU1669743 lncRNA upstream 69144 50213753 ~ 50213953 (+) True G1459493
TU1669742 lncRNA upstream 69635 50213231 ~ 50213462 (+) True G1459492
TU1669740 lncRNA upstream 72107 50210735 ~ 50210990 (+) True G1459490
TU1669730 lncRNA upstream 106142 50176692 ~ 50176955 (+) True G1459480
TU1669769 lncRNA downstream 7914 50297463 ~ 50358790 (+) True G1459518
TU1669761 lncRNA downstream 14582 50304131 ~ 50310362 (+) True G1459510
TU1669818 lncRNA downstream 79500 50369049 ~ 50369289 (+) True G1459562
TU1669824 lncRNA downstream 91225 50380774 ~ 50381005 (+) True G1459568
TU1669833 lncRNA downstream 101718 50391267 ~ 50391700 (+) True G1459570
XM_036948192.1 mRNA upstream 2388 50263347 ~ 50280709 (+) False LOC110494960
XM_036948191.1 mRNA upstream 2388 50263348 ~ 50280709 (+) False LOC110494960
XM_036948193.1 mRNA upstream 2388 50263354 ~ 50280709 (+) True LOC110494960
XM_021570312.2 mRNA upstream 24089 50252807 ~ 50259008 (+) True zgc:112334
XM_036947899.1 mRNA upstream 43430 50233647 ~ 50239667 (+) False rhoa
XM_021570324.2 mRNA downstream 729 50290278 ~ 50301818 (+) True prkar2ab
XM_021570341.2 mRNA downstream 92523 50382072 ~ 50386942 (+) True LOC110494986
XM_021570316.2 mRNA downstream 110798 50400347 ~ 50402864 (+) False LOC110494971
XM_021570317.2 mRNA downstream 110798 50400347 ~ 50402864 (+) False LOC110494971
XM_036948214.1 mRNA downstream 110798 50400347 ~ 50402864 (+) True LOC110494971
TU1669722 other upstream 99401 50181165 ~ 50183696 (+) True LOC110494957
TU1668956 other upstream 843768 49439006 ~ 49439329 (+) True G1458807
TU1668189 other upstream 1242741 48933340 ~ 49040356 (+) True erc2
TU1668186 other upstream 1345075 48928347 ~ 48938022 (+) False erc2
TU1669855 other downstream 141258 50430807 ~ 50435706 (+) False atxn7l2a
TU1670065 other downstream 486980 50776529 ~ 50777072 (+) True G1459769
TU1670568 other downstream 605391 50894940 ~ 50897444 (+) True LOC110494047
TU1670644 other downstream 790583 51080132 ~ 51090889 (+) False G1460249
TU1674769 other downstream 3884465 54174014 ~ 54189617 (+) True G1464092

Expression Profile