RNA id: XM_021570302.2


Basic Information

Item Value
RNA id XM_021570302.2
length 3374
RNA type mRNA
GC content 0.54
exon number 11
gene id fbxo42
representative True

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 50364407 ~ 50380405 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTCCTCCATTCACGATTTACGTGCGCGCTCCCGCGTTGCGAAGGACGCTGCCACTGAGGAAGATGGCGAATGCTTGGAGTATGGCGATTTACTGCAGAAGCTGATAAAGGGAATGAGAAGAGAGACGTCAAAAGATAGAAAACCAGCAAAATAATTCGTGCAGAATTACGAAAGAAAGAATGTCCCGCTCCTCAGACAGTGAGGATGGATACTTTGTTGCCATGGATACAGAGGAAGATGGAGCAGGTCCTGTTGGATTGGCacaggaggaagaagagaagatgGGGAccaacagaagagagagggaccTAGAGGGATTAGTTGAGGGCGAGAGGACAATGGTGGAGCTACCAGAGGAAGTCCTAGAATACATCCTGTCCTTCCTTTCACCTTACCAGGAGCACAAGACCGCTGCACTGGTGTGTAAACAGTGGTACCGCCTCATCAAAGgtgttgCATATCAGTGTTACCATGGTTTTCTGCGGGCCGTCCAGGATGGCTACATCCAATGGGAGAGTCGTACATACCCATATCCTGGAACACCCATCACTCAACGCTTCTCACACAgtgcATGCTACTATGACTCCAACCAGTCCATGTATGTGTTTGGGGGCTGCACTCAGAGTAGCTGCAATGCTGCCTTCAATGACCTGTGGAGACTTGACCTCAACAGTAAGGAGTGGATCCGCCCTTTAGCCTCAGGCTCCTATCCGTCTCCTAAAGCGGGGGCTACCCTGGTGATGTACAAAGACCTGCTGGTGCTGTTTGGTGGATGGACTCGCCCCAGCCCCTACCCACTGCATCAGCCAGAGAGATTCTTTGACGAGATCCACACATACTCCCCTTCCAAAAACTgGTGGAACTGCATCGTGACGACCCACGGTCCCCCGCCTATGGCCGGTCACTCTTCCTCTGTCATAGGGAGCACCATGGTGGTGTTTGGAGGGTCACTAGGGGCACGCCAAATGAGTAACGAGGTGTGGgttctggatctggagcagtggtCCTGGTCCAAGCCAACCATCTCTGGCCCGTCCCCCCACCCACGAGGAGGCCAGTCTCAGATTGTGGTTGGCAACGAGACTCTACTTATTCTGGGAGGCTGTGGAGGCCCTAATGCGCTGCTGAAGGATGCCTGGCTCCTCCACATGGGTGCCCCACCCTGGACGTGGCAGCAGTTGAGGGTTGAGAACGATGACCATGGAGCCCCAGAGCTGTGGTGCCACCCCGCCTGCAGGgTTGGGCAGTGTGTGGTGGTGTTCTCCCAGGCTCCGTCTGGCCGTGCGCCCCTCAGCCCCAGCCTGAACTCTCGGCCCTCACCCATCAGTGCCTCTCCCGCTCCCTTGGGCACGGAGCCCCCTTCCCTGCGCTCCTATTCCCCTGTGAGGAGCGGAGCCGCCGGGGTCGTACTGGGGGCCGCTGAGGAAGCCCCCTGTGTGAACGGCCGCTGGGGCACACTGAGACCCCGTCCCTCGGCCAGAGGGGGTGCCAGAGAGGGTAGCCCCggctcctcctctcagcagccatCCCCCTCCCAGGGTCCTGACAGCCCgcctcttccatccctccatccactaCTCGACGGCTCGTCCCCCTCTCCCAGGACCAGCCCTGCCCAGGCAGCCTCCCCGCCCTCTCACCCCCCTGTCTCGTCGGACTACGGCTGGGAATCTACTCTTTCTGCCACCCACCCCCTTTCTGCTGAGGTACTCAGCACTAATGGAGTGCACACACCTCCCCCTGCTCCTGGTTCCCCACTCACTCCACCGGGGGCGGTGTCCCCTGCTGCCCTGAGACGGGGCCTGGAGGCTGTCAAAAACCCGTCCTCTTCATCCATGCCATCGTCCTCAAATCCATTGTCTCAAGGGGCTGCTACAGGAGTAAGTGGAAGCGGGGGAGGCGGGGCTTCAGCGGGAACCTCCCCCTCATCCTCCAGCCCACCACAGGTTGCCGCTGACGGACACACCATCCCGCCCATCGCACGGCGGCTTGGCCATCACCCGCCCCAGAGCCTGAACGTGGGCAAGCCCCTGTACCAGTCGCTCAACTGCAAGCCCATGCAGATGTATGTACTGGATGTGTCCCGAGCCAAAGGGGACGGTCTTGTCTCCTGGAGGGTTTACGGTAACGGAACCCCCGCCGCCGTCACGGGTCCCCCCGAGACGAGCCTCCACACAGTGGTCCAAGGGAGGGGTGAGCTCATCATTTTCGGGGGCTTGATGGACAAGAAGCAGAACGTGAAGTACTACCCTAAAACCAACGCCTTGTACTTTGTACGCGCTAAGAGGTAATGTAACGACGGACAGGGTCGTGAATGATGCCAGAAAGTGTTGCTAAGTAACGGACGATCAATTTTCCATCCTGACCCATACAAGGGAAGTGAAACAAGGTCTTATTCCTCTACCGCAGAGGATCATGGGAAAATAACATGTCACACTAATTCTTGGCGTTTCTTTCTTCTCACACTAacttctctccctctacttctctctctaccccctcttccTATCGCATAACTTCAAAGAATATAACATTTCAGACAGTACATTTTAAGGACGTTGAGGGTGTTGTTGCTATGACAGTGAGGATTGGATGAATGGGTATCCTGACCTCCCAAcacctgcagtgtgtgtgagatggTTGGTCAAATGGCCCGACAGGACAGCAGTTTTTCCATTGATCCCTAAAGATTTACAGTTTCTGTTCCTCTTCGGTCTCCCCGCTGTgcactgagagggagagaaaagaaaaTGGTTGACCGAGCCCTGTGCTGAAGAGGGAGGAACAGTGGAAGGCTGACTACTTTGCTTTTTTAATCACTCTATCAGCCTGCATTGTTTACATTGAAGAGTGTAAGTGCGTGTGAAAGCGTGTATGTTGCTGTTGGGTGTGAGTGCGTGTGGGTGTAAATGCTATTGTATGTTGATTtgggtttttttttgggggggggggggggggggggttgcagtgTACTGTAAGCATAGTAAAACAATAAAAGCCTAATTGTCAAAACTCATGTTTCATTAGGTGTTAATACATTCCCTTTAAGTAGTTGATTCATTATGTCCTGGAAGTATTTTGTTATTGGGTCATCACCAGGCTATGCTGCATCTTACAAAATAACGGTTATAAATAAACACATCCAGTAAAGACCTGCTTGGCATAACCTTGATGCAgtagtaaacattacacaactgACGGGAACGTCGAGACTCCGGAGTAAATTTCCTGATATGCGGGCCCAAGACAACGGGTGGAATGTTCTGATGttaatatCAACTCTCCAGGATCCTACTgacctacccatgagccccctcttTTTCCTTTTACTCTAACCAACATCCTTACCCACTGAGCACCGACCGACACAGGAC

Function

GO: NA

KEGG:

id description
K10317 FBXO42; F-box protein 42

JBrowse2

Loading

Neighbor

RNA id RNA type direction distance location representative gene id
TU1670213 lncRNA downstream 18072 50343942 ~ 50346335 (-) True fblim1
TU1670273 lncRNA downstream 74871 50285956 ~ 50289536 (-) False G1459922
TU1670272 lncRNA downstream 74871 50288042 ~ 50289536 (-) True G1459922
TU1670263 lncRNA downstream 83707 50278420 ~ 50280700 (-) True G1459917
TU1670222 lncRNA downstream 113563 50250633 ~ 50250844 (-) True G1459890
TU1670292 lncRNA upstream 1322 50381727 ~ 50382043 (-) True G1459941
TU1670294 lncRNA upstream 10960 50391365 ~ 50391787 (-) True G1459943
TU1670295 lncRNA upstream 12195 50392600 ~ 50392826 (-) True G1459944
TU1670303 lncRNA upstream 23138 50403543 ~ 50404039 (-) True G1459952
TU1670304 lncRNA upstream 23775 50404180 ~ 50404451 (-) True G1459953
XM_021570311.2 mRNA downstream 1323 50352549 ~ 50363084 (-) False slc25a34
XM_036948215.1 mRNA downstream 18268 50336614 ~ 50346139 (-) False fblim1
XM_021570319.2 mRNA downstream 22287 50336614 ~ 50342120 (-) False fblim1
XM_021570320.2 mRNA downstream 22308 50336614 ~ 50342099 (-) False fblim1
XM_021570318.2 mRNA downstream 22416 50336611 ~ 50341991 (-) False fblim1
XM_036948185.1 mRNA upstream 65400 50445805 ~ 50455536 (-) False zbtb40
XM_021570298.2 mRNA upstream 65400 50445805 ~ 50455730 (-) True zbtb40
XM_021570296.2 mRNA upstream 79137 50459542 ~ 50483469 (-) False usp48
XM_021570295.2 mRNA upstream 79137 50459542 ~ 50483498 (-) False usp48
XM_021570294.2 mRNA upstream 79137 50459542 ~ 50483932 (-) False usp48
TU1670209 other downstream 9657 50349819 ~ 50354750 (-) True slc25a34
TU1670172 other downstream 189814 50174308 ~ 50174593 (-) False LOC118940151
TU1669544 other downstream 328895 49991563 ~ 50035512 (-) True G1459325
TU1669546 other downstream 406144 49956514 ~ 49958263 (-) True LOC110494969
TU1669553 other downstream 598338 49727352 ~ 49766069 (-) True G1459333
TU1670501 other upstream 374529 50754934 ~ 50760996 (-) True G1460128
TU1670245 other upstream 486822 50867227 ~ 50875478 (-) True LOC110494046
TU1670959 other upstream 618349 50998754 ~ 50999404 (-) True G1460539
TU1670991 other upstream 682839 51063244 ~ 51077317 (-) True LOC110494054
TU1672019 other upstream 1366511 51746916 ~ 51761022 (-) True G1461521

Expression Profile

XM_021570302.2 Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 30.
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XM_021570302.2 Expression in each Bioproject

Bar chart with 21 bars.
XM_021570302.2 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 150.
End of interactive chart.