RNA id: XM_021570341.2


Basic Information

Item Value
RNA id XM_021570341.2
length 3922
RNA type mRNA
GC content 0.43
exon number 4
gene id LOC110494986
representative True

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 50382072 ~ 50386942 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTCCCGATGAACATGTGCAATGTCGATACAGTAGAGGTCGCTGTTgattctgtatttttttgtttttgactGCTTGGTTTTCGATTTCGCATCGGCGCAGACATCCAGCTAGCTACAGCGTGTGTTTGTATCTTGAACACTGAGCTCGTGTGTGGGTCTTGGACGCTGTAATATGGAAGATGAAGAGGTTTGCGAAAGCTGGGAGGAAGCTGCAGACAGCGGGGAAATTGAGCGAAGACTCGAAGCAAAGTTGAAGATAAGCCAGAAAACAAAGAAATCCTCCATCGGCCCAGGTAGCTCCCCTATACGAACTGCCATGGTTATCCAGGATGAATCTCAACCTGCAGCCCCCCCACCTCAAATCCGAATTCTGAAGCGCCCCTCAAGTAACGGTTCCCTAGGGTCAACTAGTTCATCTAACCGCCCCACCCAGCAGCCGAAGTCACTGGCCCAGCGGGAGGCAGAGTATGCTGAGGCCCGCAGGAGGATTTTGGGTAGTGCTAGTTCTGAAGAAACACCTCAGGACAAACCCAGCCAAGACAGACCAGTGCGAGtgagtgcccagccacagccagAACCGGTTCGTCCAAACAATCACCTGATCCGCCAACCCACTGGCCCAGACGGCACCACAGGCTTCCGTCACTGCAGATAGAGtgcagaagggagagggggatccATCGTCTCCATGGGGGCATGGTGTGCAGGGGATAAAGGGGGAGGTAGCATAGTGCATGAAGAGCAGAGTGGTGGGATGAAATTGAAAAAATTAGATTAGGACAAACAGAATATATTGGCCCACAGAATGAGATGAAGTATCCCTCCCACCCCTTTCTGCTGACTGTTGGTACGCTCATTGCCTTTCGCCCTCTGCCCTGTCTCCAGCCTGCGCAGAGGGTTGCAGGGAGATGGCAGAGAGGAGCTGAGTGTCAAGTCagatctcctctctgtcccacACTGTGACAAGGGCAGTCCCTCAGGATTCCACACACTGTGATATCTCCCATGATGCACCCTGAGCTGCCCCATGCCCCTctccactgtccctctcctgCTAAGGACCAGGGTCCTCCTAGGTCCCGGGCATACCTGCCCTCCAGGGAAATGACAGACTGGTTCTGTGGGACTGAAAGGTGGCCAGGGGGAAGTGAGGAAGGAACCTTGCTCCGGGTGTGAGTGTAGGGCCATGGATAGAGCAGGGGAGTGACAAGGTGCCACTTCGTGTTAGCATGTTCAAGCAATAATTCCGAAATCAACATGTAAGCCCCGCCTTCTTTAGTTAGACTGCCTGTGCTGTATCTGTTAATATTCGTCTGTTTTGTTTTTAAgttatttcaacaacaaaaaaaacattttactgtaattttatttttctttgtttttttgtttaacaTCTGGGCAGTAACTGAATGGCGAATTTGGGAAGGTTGTTAGATTAATGGTGTCTTCTGTTATTGCatctagttttttttaaattcatgtctGTTTTCAAAGTGGGAATGATAtagaagaaaagaaaaaaaatgacaaatgTTAGTGAAGCTGAATGTTTTATAGCATCTTATACAGGTAGTCATTGAAAGTAGTAGCCATTTTTGAAACGATACTGTAAGTATATGTTGAGATTAGGAGAAAATAGTTTATGGATGGCCAAAAAGTAATCCTGTAAAAATGTCCACACTGCGTGGCCTTGTTGCTTCATTTGCGAAGAGAGGGGCCACCGATGACAAGGAGCATGAAGAAGGCCATCGCTTTCTTTTGATTCAGGGTTGTTTGAAGAGGAAGCCATTGGCTGGGAGTGTTTTAAGCAGcacctctgttctgtcctgtctttcATTCTGTCTCTCCAGGGTTGCCTTACTTGGAGAGAGGAGCACTTGTTCTTTTACGTTAAAGACATGCTGGATCAAGGAGAATGACAGAATAACAAACTGAGTTAGATGGAGATTGACATAAAGTTTCAATTTTTGCTTGGTTAGAAGGCAAGTTATTGTTAAAGAGAGTGCCAAAGTTGAAAGGAAGCCCTTTTATCCCCAGTGGAGGAACATGTCATAGCTCTGTCTATCCAATCTATGTAGTTTTGTAAATGAAATGACAAGAAACTACATCTTGGCTGTTTTAAACCATAGTAAATGTGTTGACTCAAACGCCTTAAATTATCTTTGGTTTCATATTGGACCCCACAGTAACTGAGGCACCTCAGGTTAATGCTCTTGGATGCTGAGATTTAAACCCCCCCacctcctaaaaaaaaaaaaaaaaaaatatcctccctgtaacctctctttctctaatTTCTGTCAATTGGCCCGCCTTAGAACCTCAGGAAAGGTGGTTTTGTTGGCCCCTCAGGCAGGTTTTAATGCTGGAGTGGCCAAGCAAAGTCTTTGGTCTGCTCACATGTAATCCCAGTGATGCAGTGACTGGCTGGAATTGTTGCACAGCCTAATATGTAAAGAAAATCACACCCAGTAACCTTATTTGGGTGTGATTTGGTTCTTATTTGGACTATACCTAGAGTATGTTACGTCTGGGCCATTGAAGAGTACTCAACCTCATCCTTTATCCTTTCTAGGGATCACTGAGCAGAGAGGGCTGGACAGGTGAAAGCAATACGGTGGAGAAACCCAGGTGGATTGTAGAAACCCCTGGGTGCGGTTTCCATACCTGTCTTGTCTACATGGATCAGAGATCAGcttggggaagggagggaggaggagactagAGTCTAACCCTGGATTAGTATGATCCTCCTGAACAGGGTTAGGCTCAATTCAGTTTAATTCAGGAAGCGAATTGAAATGTAATGCTTGAATAGAAAATAGATTTTTTATTTCTGAGGATTTATTCCGTTTGTGAAGTGAATTTAAATTCAAAACCGAATTGACCCCAACGATGCGCTTGATGAGCCTGCGCAATTCCAGTAACTCAGCCATCGGATATGGGGCGGGGCGACAATGAAGAGATTACGCTTTTCTCTTCTGTCATGCGAACACAACAAACAAATCAgcctgtaaagttttttttaaattcccttTAATAAAATAATATTGAAAAGTAAAGTTAAACGCAATTGCAAATATTTTTGTTTGGTGTAGagttttatttttctattttgtgaaatgGAAAATGTGCATGTACTTTTAGTCAAATATTAGTGGTTTTACAGATACCAAGCATAGCTGAAACCATAACCTTAAATGTCCCTCAATGACTACAGGAAGAATTTCAAATGCATTAATATGACAGAATTTTTTGAGCAATCATGTGAATATGATATTCTGCACAACCAACATAAATTGCATTTCAGAAATGCTTAATGCAACCATTGTCAATTTTGGTCAATGCCCAATGAGCTCTTTGTGTGCTTTTGAAGTTATACCTAATGTACAATTATTTAAATTTTTTAACTTTCAGTTAGGCTAATGCTTGAAATTATTATTCTAACCTAAACCATAGCAGTAAGAACTCCATATATGGCTAACTTACTCTCATATATTTTATTGAGCTGTTGTAGCTTTAAAATGAGTATGGTGCCAGACATTTCAGATTTCCCCTTGGAGATATTTAATAGTCtgtcctgttaaaaaaaaaaaatcttaaaccCCGCAGTAAGCACCATTGACATGCATCTTGTGTTCTTACTAACCTGATCTAAAAATGTGTGTGAAGTGTCGTCCTAATGTATATCTCCTTGGAACTGTCATATCATTGAACACTTGTGTCCTTTGTTTGTCTAGCCCAACACACTACAACAGTGGTATTCAACATTTTTCGGGACCCCATTTTTTTTTCACTGTTTTTTTCTCACGACCCCACACCAAATCAAATGACACAACGTTCAAATCGGTACATTTCtatttttacatcaacaaatagCCTTCACGTCGTaccattttcaaaataaaaataaaaccaaAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1669824 lncRNA upstream 1067 50380774 ~ 50381005 (+) True G1459568
TU1669818 lncRNA upstream 12783 50369049 ~ 50369289 (+) True G1459562
TU1669769 lncRNA upstream 23282 50297463 ~ 50358790 (+) True G1459518
TU1669761 lncRNA upstream 71710 50304131 ~ 50310362 (+) True G1459510
TU1669744 lncRNA upstream 167661 50214036 ~ 50214411 (+) True G1459494
TU1669833 lncRNA downstream 4325 50391267 ~ 50391700 (+) True G1459570
TU1669842 lncRNA downstream 17434 50404376 ~ 50404630 (+) True G1459575
TU1669849 lncRNA downstream 36873 50423815 ~ 50424018 (+) True G1459582
TU1669850 lncRNA downstream 37443 50424385 ~ 50424786 (+) True G1459583
TU1669853 lncRNA downstream 48877 50435819 ~ 50437567 (+) True atxn7l2a
XM_021570324.2 mRNA upstream 80254 50290278 ~ 50301818 (+) True prkar2ab
XM_021570329.2 mRNA upstream 92523 50283097 ~ 50289549 (+) True slc25a20
XM_036948192.1 mRNA upstream 101363 50263347 ~ 50280709 (+) False LOC110494960
XM_036948191.1 mRNA upstream 101363 50263348 ~ 50280709 (+) False LOC110494960
XM_036948193.1 mRNA upstream 101363 50263354 ~ 50280709 (+) True LOC110494960
XM_021570316.2 mRNA downstream 13405 50400347 ~ 50402864 (+) False LOC110494971
XM_021570317.2 mRNA downstream 13405 50400347 ~ 50402864 (+) False LOC110494971
XM_036948214.1 mRNA downstream 13405 50400347 ~ 50402864 (+) True LOC110494971
XM_021570334.2 mRNA downstream 21734 50408676 ~ 50422865 (+) True sypl2a
XM_036948187.1 mRNA downstream 40203 50427145 ~ 50437612 (+) False atxn7l2a
TU1669722 other upstream 198376 50181165 ~ 50183696 (+) True LOC110494957
TU1668956 other upstream 942743 49439006 ~ 49439329 (+) True G1458807
TU1668189 other upstream 1341716 48933340 ~ 49040356 (+) True erc2
TU1668186 other upstream 1444050 48928347 ~ 48938022 (+) False erc2
TU1669855 other downstream 43865 50430807 ~ 50435706 (+) False atxn7l2a
TU1670065 other downstream 389587 50776529 ~ 50777072 (+) True G1459769
TU1670568 other downstream 507998 50894940 ~ 50897444 (+) True LOC110494047
TU1670644 other downstream 693190 51080132 ~ 51090889 (+) False G1460249
TU1674769 other downstream 3787072 54174014 ~ 54189617 (+) True G1464092

Expression Profile