RNA id: XM_021570334.2


Basic Information

Item Value
RNA id XM_021570334.2
length 3034
RNA type mRNA
GC content 0.42
exon number 6
gene id sypl2a
representative True

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 50408676 ~ 50422865 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gcacaaaCAAAATGTACCATCGCCATtataccaaagaagaagaaaaacaagtTGCTTGTCACGTGTGCCTATACAGTTTAGAAAGTTTGACAGCAGTTTTACAACATCTGCTGCCTGCCAAAATTCAGTCGAATGTAAACCAGAGGTTCGTCCAAGTACAAGATTGTTGCTTTGGGAGAATATACGTTTTCTTCCAGTAAAGGGAACTTAACGAACAAACTTCTGAAAATCGAACATGGAATTTATTCAGAAACTGCTTTCGGGATTCAGACTTGACCTGGGACCGTTGAAAGAACCTCTGGGATTCATTCGGGTTCTAGAATGGGTGTTCACCATCTTTGCCTTTGCCACCACGGGGGGTTATTCTGGGACGACCCAAATCCTTGTGAATTGTGTGGGGGGGGAGCCCAAGACCGTAGGGGCAGGGTTCAGCTACCCCTTCAGGTTGTCTAGCTACGGCCCTTTCATGGTGCCCACGTGTAACGGCAGCGCTGCGAATGCGACTTACCTCCAGGGCGACTACTCCTCCTCAGCCGAGTTCTATGTCAGTGTCGGTGTCTTGGGCTTCCTGTACTGCACCGCCACCCTGGTGCTCTACCTGGGCTACCAGCATGTGTACCGCGAGGGCCGCGGACCCACCTTTGACCTGTTGGTGACTGCTGCCTTTGCCTTCCTGTGGCTGGTGTCCTCCTCTGCCTGGGGGAAGGGCCTGACTGATGTGAAGTGGGCCACCAACCCAGTACACCTGGTTGAGGCCTGCCAGCCCCAGTGCTCACCTGGAGAGTACCCGTCCATGGGAAAACTCAATGCCTCTGTGATTTTCGGGTTTCTGAACCTCATCCTGTGGGCAGGTAACTGTTGGTTCATCTTTAAGGAGACTCCATTCCACAAAGACCCCAATCCAGCAACCACCATGGAGGGTGGAGTCCCCAGCTCTTAATTGGCACACAGAAGCTCCACCTCTACAGTTCAAGCCAATCGCCAAGGTGCTTGGGACTGACAGTGTAACCCTATTAGGAAAGAAACTAAAATGTAGAGCAAAATTAAGCTTTTTAACCACCAACAACACAGGCCCCTTTTCAATGACGAGTGTTCGGCTCAAGCTTCAGGGATAGTAGTTAGTTGCCCATCTCTAACTTTCACCACAGTGAACCCAGGTTGTTGTTTATCTACTCTTCATAGAATTGGTCAGTTAATATGATTGATTTGCTAGCTGCACTCAACACTACCCCAATTTACAGAGTGATCACAactatttttttacttttttaaatGGAATTTCCCTTCCAAACTAAGTGCCTTTACTGTACATAAAATGTGTTCAGTTACTGTGAACGTGGCTTGAGTTGAACACTTTGATAGGGATCTGGGTATTTGTGATATCCAACATGTTTGATTTGGTCGGTTCCTCTAGAACAGGTGCTTTCGATCACATAGGCCTACCACAAAACAGGGCTCGCAGACAACCTACTGTAGCTGAACTGTTCCCTATATTTGATTCATATGAGGAAGTTCAGTAATGCTGGGTTGACATACAGTAATTGCCTGTCTGGAGGTCTCCTCCTTTCCCATGAATTTGTTAAAGGAGATGTCAAAGGTCATGTTGAAAGCCCCTGTTCTAGGTTGCCTTTCACGTCGAAATTTGGCACTTTCAAATAAGAAACAATTTAACTACTGGCCTTTCAGTAACTCCCTAATATTCCACTACTACTGCGTGTTTTGAAACGGACCTCATAGATACATTGATGTTTCTGTGTCTGAAAGCGTATTGCTTTGGTGCACTTAACTCGTTAGAGCTGTGTTAGCTACTTGATTGCAGTCGTTACTGATGTACAATGCGTTCCTCTCTTTGACGTGTGGTATGGCTTTTTTGTCATTATTTTGTTAACCGTATGAAAAGTGCCTTGGTAATTTACACAAAATATCAGTATCTGGTTAAGAGAGTACTTACTCTCAAAGAGTAACCAAGTTATTTTGGCTACAGTCAAGTTGATGTAACATGTTTTTAGTAACGGCTGTCTGTTTTAGTTATTCAACCAGTCAGTGCCTATAGTCCTCGACAGCGCTGGTTGGTGTATGTTTGCTCAACAACCTGCAGATAAGTGGTATTTTTGTGGATATCTTGGAAAATTTAGccaaactttttttaaatttgtGTATTGTGGAGGTGACCATTCTAACAACTACAACACTAAGTTCCCTATGTATTTGACTCTTCTCAAAAATGTTGTTTGAACGGGATAAGGCAACTTTAGAAAAGTcattatttatactttttttttttttacctacatTCATTGGTCAATACATTTAAAATTAAGCTAATTTATGGCTTCTGTGTgttaagaaaaatatattttatgcagCTTCTCTACCGGAGTCATTTTTATGCAAACACGGGTCCTAGATTTGTTGCTTTTTATTTGGCATCACTGGACAAGCTAGAATTAATCATGGCACCGCCAAGTAACAAGTGGCAACATGTAGGTGCCAAAATGTGGTGAATCCTGCTGTATTTTTTTGAATAATgcttatttttttcccctcaattaTTTACATTGGTCCTACATTTAATTTCGGCAATGATTGCGTTTGACGGTTATGTGGGGATGACGTACAAACTCTGTCCAGCTCTATGGGAAGTGAATGGAacttgatttttttttgttgctttgcaCTAAGTGTTGTAATTAATGTCATTGACTTATGAGTTGTGATTTGAGGGAAATGCAGACATTGTGCAATCCACACAGTGCCGTTCATACCGCCTTGGCCTCTAGTTATTTACAAAGGGAAGGTTTGAGTCAATATCAGTCATCAAAAGACACTGCTCTAGATCATTTGTGCCATTTTAATAGAAATAACCTAGCTTTTTAGGGTAGAAGTCAGACTTGTGGGTCTTCTATATTCTCTAATGGGATTTCTGAAATTTGACTCTGTATTTCTTTTGTATTTTGTTCCATGTTTGTACAAAATAAACATCTGTACATCCTCTGTATTGACAACACATTAAAGGATAAGAGAGCTGCAACAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1669842 lncRNA upstream 4046 50404376 ~ 50404630 (+) True G1459575
TU1669833 lncRNA upstream 16976 50391267 ~ 50391700 (+) True G1459570
TU1669824 lncRNA upstream 27671 50380774 ~ 50381005 (+) True G1459568
TU1669818 lncRNA upstream 39387 50369049 ~ 50369289 (+) True G1459562
TU1669769 lncRNA upstream 49886 50297463 ~ 50358790 (+) True G1459518
TU1669849 lncRNA downstream 950 50423815 ~ 50424018 (+) True G1459582
TU1669850 lncRNA downstream 1520 50424385 ~ 50424786 (+) True G1459583
TU1669853 lncRNA downstream 12954 50435819 ~ 50437567 (+) True atxn7l2a
TU1669887 lncRNA downstream 29915 50452780 ~ 50453450 (+) True G1459618
TU1669888 lncRNA downstream 30618 50453483 ~ 50453775 (+) True G1459619
XM_021570316.2 mRNA upstream 5812 50400347 ~ 50402864 (+) False LOC110494971
XM_021570317.2 mRNA upstream 5812 50400347 ~ 50402864 (+) False LOC110494971
XM_036948214.1 mRNA upstream 5812 50400347 ~ 50402864 (+) True LOC110494971
XM_021570341.2 mRNA upstream 21734 50382072 ~ 50386942 (+) True LOC110494986
XM_021570324.2 mRNA upstream 106858 50290278 ~ 50301818 (+) True prkar2ab
XM_036948187.1 mRNA downstream 4280 50427145 ~ 50437612 (+) False atxn7l2a
XM_036948188.1 mRNA downstream 4302 50427167 ~ 50437612 (+) False atxn7l2a
XM_036948189.1 mRNA downstream 4302 50427167 ~ 50437612 (+) False atxn7l2a
XM_036948190.1 mRNA downstream 4309 50427174 ~ 50437612 (+) False atxn7l2a
XM_021570335.2 mRNA downstream 15805 50438670 ~ 50445648 (+) True LOC110494981
TU1669722 other upstream 224980 50181165 ~ 50183696 (+) True LOC110494957
TU1668956 other upstream 969347 49439006 ~ 49439329 (+) True G1458807
TU1668189 other upstream 1368320 48933340 ~ 49040356 (+) True erc2
TU1668186 other upstream 1470654 48928347 ~ 48938022 (+) False erc2
TU1669855 other downstream 7942 50430807 ~ 50435706 (+) False atxn7l2a
TU1670065 other downstream 353664 50776529 ~ 50777072 (+) True G1459769
TU1670568 other downstream 472075 50894940 ~ 50897444 (+) True LOC110494047
TU1670644 other downstream 657267 51080132 ~ 51090889 (+) False G1460249
TU1674769 other downstream 3751149 54174014 ~ 54189617 (+) True G1464092

Expression Profile