RNA id: XM_036948188.1


Basic Information

Item Value
RNA id XM_036948188.1
length 2834
RNA type mRNA
GC content 0.58
exon number 10
gene id atxn7l2a
representative False

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 50427145 ~ 50437612 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGGGCAGTGATGATGGCGGTGTGTGAACGCGCAGTAAAAGTAATGGCTGCTCTAGAACGGCGGGTGCCTAGTCTCGATGATTTCGTGGGCCAAAGCTGGAGCGCTTGGGCTGAGAGAGCCGGTGTGACTGCGTCGGAAGATCATTGCGGATCAAATGAAGAAGAGGTGATGGAGGAACCACCTTGACTATTGAGATGCGCCCAAAGCCTACTATCCATGCGTTTGTATCCTGTATGCCTTATCCCCTCTGATGAAATTCCCTGACCACTGCACCTCAGTCACAGAGTCTCTGTTTTCAGGCTCTGATGGAGATGACTGCAGCAAGAATGGGAAGAACGCAGCCGAGGCAATGTCTCTTAGGAAGGAAGACATGTCGATCTTCGGCCACTACCCGGGCCAAGATGACTTCTACCTGGTGGTGTGTAGCCACTGTGGCCAGGTGGTCAAGCCCCAGGCTTTTGAGAAGCATTGTGAGAGGAGACATGGCCCCCTGAGCAAGCTGTATGCACGCCTCCGCCCCCCCCTTCCAGCCCCCCAGCAGCGACCCCGCCACAGCCACTCCCCATCCTCCACTCACgcaacctcctcttcctcctgggaAGGAAGGGGGCAAGGGTCCGGGGCACCACGAGCAGcccccccatccccatccacaccCCCCCAGTTCAGACATACCAAGCCCCCCAAGGATGTAGTACGCCACTCCCCCCTAGATAAGAGCCCCCACAGCGGTCACTCTGAGTCGGCTGTGTTTAAGCAGCCTCCACCCCTGGAGCCTCCCCTGagctccccactcctctccctcagaGACCCACCCTGGCCCCATGGAGACACCCCGCCCGGCCGGCCCTCCAACAGTGAGAGGACACATACCCAGAGGAAGGAGGTCACATCGTCCCCTACCCTCCCTGCCCACCTCCGTGGACCAAGACCCTACAACAAAGTGGCCTCCAGGAGAGAGTGTGATCTCGACAAGCACTGCGGAGTACTAGACCCCGAGAGGAAGAAAGTCTGCACTCGTCTCCTGACCTGCAATattcactccatccaccaacggaGGAAGGTTCCTGGTCGGAGTAAAAACTTTGACCAGCTGGTGGCCGAGCTGAAGACGGGGGCCCGGATCCGTGAGCGGGGGGGTCAGACCCAGGAGGGGAGCGGCTCGGGTCGGTCCCCCAGCCCAGAGGCCCCCGAGGACCCCCCAGAACCCCCCCACTGCAGGAGACCCCTCACCAACAACCCTGCCTTTAGtcggtccagggcgtCTTTAGAAAGCGCTCCAGAGGAGGACAAACCTTGTCAGGAGGAGGGTAGCGCCCCATCACCCCTCACCCAAGGGCGCATCTCCAGCgacgagagcgagggagaggggccTGAGGAGCCGTACGAATACCCTTCCTCCTCCTGGCACCCCAAACCAGCCGCGcTGTGCTCGTTTGGCAGTCATGAGATGGGTCGTGGTGTGTACACCTTTGACCGACGGCTCCACCACCTGCGGTCGGCACTCAACGCCATGGTGGAGCAGCACATCAGCGCCCACCTCTGGAAGAAAATACCTCAAGCTTCAGACCTCCAGTCCCAGAGTCCCTCTGCAAAGAAcaacccctcttcctcctcctcgtcctcctcttcctccctgcatTCTAAAGTCAGGACAGGAAGCCACAGCACCCCTTCTCTCAGgcccccctcctcttcttcctcccacGGACCAGGAAGGGAGACACGCCTACAAATCCCCTCCCACTCCACAGCCATTAACCAATCAGCGAACTCCAGTGCTAGTGGCAGCCAAATTGTAGCCCTGGCGCCCCCTCCTGTCCGTCAGACAGGCCCAGGGCGGCCACCAGGGCCCGGAAGGCCCAAGAACCCAGTAGGGCGACCCAGCAAGCAGCAGCTGAGACTCAGAGAGGAGGCTGCTGCTGCCGCAGCCCTCCGTAAGCGCAAAGCCCCGTCACAGGAGGGTGAGCACTGCGGCCCAGACAGGAACTCTATCATCCCCCAGGACCGGGGACGGCCCCCCTCCACTTCCTCTAAGACCACCCCGCCCACTCCTCACAGCCAGACCAATGGTACTCTCTCCCCCAGCAGCAAACCCCGCCCCCAGCCATCTCCCTCGGAGCCCCATTCGCCAGCGGCAGCCTGGGCGTTTAAACGGACACATCCAACCTCTGGACACTCTTCCTCCCCACCCGACCCTCACAGCCGAGGTGGGGACTCAGGACTACACGGGAGGGGGGCGACAGGGTACGAGCACAGGGGGCTGGGGAAGAAACGCAAGGGGGGGAGCAGTGAACCCTTGCCCCCTTCTAAACTGCACcgccttccctcctcccctcgctCCAATTTCTACCCCTGGAAGGACAGTAAGGGGGGGGCGCTGCCTGGTGGGTTGGAGAAGAAAATGGGCACACAGAAGCCAAAACTGCACCATTAAGAGTGCTTGCCTTACAAGCCACTATGAGGGAGACAGCCCTGTCTGCGTAGTCAGACATCACAGGacttgagatgtgtgtgtgtgactggatgTTCAAGCCAATGTCGATGTATGCAGGTGCATATGTCTATTGAAGCCTATATGGGAAtgagtatacaggtgtatgtgggagagagagtgctTAAGACCAATACAGTACGAGCTACGTGTTGTTCAGTTCCTGAGTcggatgtgcgtgtgtgtgtatctttgtgaGTTTGCAGATGTTGGTGAGTGTGTGCAGGACAAAAGGGACACATGAATTTCTGTGTGTGAATTTATAAATACCTCAAGACCTTCTGGTTATGCTGCTAAATTAATATGTTGATTTATAAAAATGGTTTAAAAATATCCTTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1669850 lncRNA upstream 2381 50424385 ~ 50424786 (+) True G1459583
TU1669849 lncRNA upstream 3149 50423815 ~ 50424018 (+) True G1459582
TU1669842 lncRNA upstream 22537 50404376 ~ 50404630 (+) True G1459575
TU1669833 lncRNA upstream 35467 50391267 ~ 50391700 (+) True G1459570
TU1669824 lncRNA upstream 46162 50380774 ~ 50381005 (+) True G1459568
TU1669887 lncRNA downstream 15168 50452780 ~ 50453450 (+) True G1459618
TU1669888 lncRNA downstream 15871 50453483 ~ 50453775 (+) True G1459619
TU1669889 lncRNA downstream 16480 50454092 ~ 50454584 (+) True G1459620
TU1669891 lncRNA downstream 18589 50456201 ~ 50456459 (+) True G1459622
TU1669871 lncRNA downstream 24859 50462471 ~ 50462950 (+) True G1459602
XM_021570334.2 mRNA upstream 4302 50408676 ~ 50422865 (+) True sypl2a
XM_021570316.2 mRNA upstream 24303 50400347 ~ 50402864 (+) False LOC110494971
XM_021570317.2 mRNA upstream 24303 50400347 ~ 50402864 (+) False LOC110494971
XM_036948214.1 mRNA upstream 24303 50400347 ~ 50402864 (+) True LOC110494971
XM_021570341.2 mRNA upstream 40225 50382072 ~ 50386942 (+) True LOC110494986
XM_021570335.2 mRNA downstream 1058 50438670 ~ 50445648 (+) True LOC110494981
XM_021570323.2 mRNA downstream 51112 50488724 ~ 50500086 (+) False ldlrad2
XM_036948179.1 mRNA downstream 72807 50510419 ~ 50543166 (+) False LOC110494989
XM_036948180.1 mRNA downstream 72807 50510419 ~ 50543166 (+) False LOC110494989
XM_036948181.1 mRNA downstream 79775 50517387 ~ 50543166 (+) True LOC110494989
TU1669722 other upstream 243471 50181165 ~ 50183696 (+) True LOC110494957
TU1668956 other upstream 987838 49439006 ~ 49439329 (+) True G1458807
TU1668189 other upstream 1386811 48933340 ~ 49040356 (+) True erc2
TU1668186 other upstream 1489145 48928347 ~ 48938022 (+) False erc2
TU1670065 other downstream 338917 50776529 ~ 50777072 (+) True G1459769
TU1670568 other downstream 457328 50894940 ~ 50897444 (+) True LOC110494047
TU1670644 other downstream 642520 51080132 ~ 51090889 (+) False G1460249
TU1674769 other downstream 3736402 54174014 ~ 54189617 (+) True G1464092
TU1674872 other downstream 3818769 54256381 ~ 54264616 (+) True LOC110494100

Expression Profile