RNA id: XM_021570335.2


Basic Information

Item Value
RNA id XM_021570335.2
length 3347
RNA type mRNA
GC content 0.46
exon number 3
gene id LOC110494981
representative True

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 50438670 ~ 50445648 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAATAACTCCCTCATGTCTCATCCACCAAGAGATTCTATCCAGGAAGTGGATTCGAGAACCCACCTGATCGATTTGAACCAGTggtagtaggcctacagtaaataTTCCAGGTGCGCTGGACAAAAAGTATCAGCTGGTCATTATCTGCGGGATGTTTTGGAACGAAACCTGCCGGCCTGGAATTTGATTTAGTCTACGTAGGTGCGTAACAGTAAAATGCTGCCGTTTTATAATCTCTGTAACAGGAGGGGATTTACTAGCTACAGACTAATCCGTTGAGACCGCACATCCATCGTTTCGTTTTCCTGTGATGTGTTGGTCAACATAGTTTGTGATACGTTTATGAATGTGATGCAATTTGATACATCCTTGCTGCGCAAGAGTCCCGAGCGCGGTCACGGATAGACTGGCGCCAACGGTTCAAGAACATTAACTGGCCCGATTTATATCCAACTAATCTCCATGTATCTGCCACGACGCTCAGCGAACACAGACCATCGGTTTATCATTGTACAGTTAGCCCGCACGCTCTCCATTTAGCCGGCCGCGGAGAGATGCGCGCAGATGTGGAGTACAGCCCGGTCGGCGAGGGGCTGGGGATGAGCGAGTGCTGGCTATATGTGTGGATGCGAAGGGTCGCAGTGATCGCTGCGCATGTCATAGCTGTGGGTCTCACTGTGCTGATTTCAGTACTATCCCGCCCGGGAACAAGTCTATTTTCCTGGCATCCTGTGTGTATGTCTATCGCATACATCCTGTGCCTGACCGAGGggatcctcctcttctctcccgaGGGGACTCCGTTCTGCTTCAAGGCACGGAAGGGTAAAGTCCGTCTGCACTGGTTCATCCAGGCCCTGGTCATATTGGCTGCAGCCACCGGAGTTGGCTTCATGGTTGCCAGCAAGAACGTGTCAGAGCGCCCCCACCTGGCCACCTGGCACAGCCTGCTGGGGGTGGGCACCCTGGCTGCCACCGTCCTCCAGGCCGCCTGCGGTATCTGCCTCCTCTTCCCTAAGCTGCTCAAGCTGTCGCCTCCACGGCTCAAGCTCTACCACGCCACCTGTGGCCTCGTGGTGTACCTGCTGGCGACTGTGACCGTGGTGTCGGCCATGTTTTCTGACTGGTTCCAGGCCACGGTGAAGGGGGTGGTGTGGTACGCCTTCCTGCTGCTGCCGCTGTTCCCAGCCCTGGTGATCATGAACCAAATCACTAACGCCTACCTGCCACGCAAGAAGATCACCACCTGAGACTAAGTTGTAGGTtttcacagtacagtagactatagatcAGTGTCTCCCACACCTCTCAtgagtacccccagccagtccacgtATTTGATGTATTCGACAACTAGCACAGCTGATTTAACTAACGAGGGGCTTAATTTAGTAGGTGATAATTTCAATCAGCTGTGTTAGTTCTGGAAAACGTCAAATAAGTCGATTGTCTGTGGGTACTCATGAGAGGTTGGGGAAACTgctatatatacagatatacgtATCTTGAAAGACTACCACCAGGAACTCAGTCTTACACAAGTACAAACATATACAAAGTACTAGTGACGGGAGTTagttgcatacacacacacacatctataagAAGACCTGGGTGTGACTGTTGAATCCTGATAAACATGTATGGGACCTGCCCTGAAAGGCTACTGAAAGCTCTGCTGGGACAGAGTGGATGTAACCCTGAAGTCGTCTCCATTCCGTCATCTGTTTCTCCAGAGGCTACTTTGCAAATTTTATCCAGCGAACAAAAGTCTGAGATACTGTATCTGGATGATTTAAGGCAGGGCTggccaaccctgttcctggagagctacagtcctgtaggtgttcactccaaccctaatctagcgcacctgattctaataattagctggttgataagctgaatccgtttggttacaactggggttggagtgaacctataggagggtagctctccaggaacagggttggacagCCCTGGTTTAAGGGAATACAGTACCATTGTGTATCAACCTGAGTGTGGTTGTGAGCAGAGCAGCTATGTGGGTTTTACCGTTTTGTTTTATGATTCTTTTCTCTTCAGTCAGCCTATATGTTACTGTACATTAGCCATTACGacacattttaaaaaggcttttttttttaccagtgtTTGACGTCCTGTccggagaagtgtgtgtgtgtcattgtcatTGACACTGGAAAATATTAGCTTTCTCTGAATGAAGGTATTCGCTAGAAACCCCTGGCGCACAAAGGCCTATTGGATGTACCAGCACAATGCCTAAACTTCTCCCAGTCTTATTCAGTAGGTAAAAACACTTGAAAGAAATTGTGACCAAATACCAGCATGTTGTTGGGCCATTTTTATACTTGATACAGGGCAAATAAGTCAAACAAAGGGAATAATATAGTAAGAGAccataaagattttttttaatcTATCAAGTCTTCATATGTATTACCTGCTGTGGCAGCCGCAGGAGTAAGGGAGTTGGTTCCTAATTTTGTTTTCAGAGCATACCTAGAACTCTGTATTTCCTGCTATGCTATAGGTCAAGTTTACCAGCAGCAGCTAGAGTAACTTGGTGTTGGACTAATAAAATGGCCTTTGGTGCCCATGTTGTGTAAAACAGTTCCTTGAACTACTCAAATCTCTTCTCTGCTTTACTTGCTTGTAAAACCAATCCAACGCCCTCCTGTTTTAATAAACTGTCTCCTCATTTGAACTAATGCAAGGTTGTTTACTGACTATAACGAGTGGCTGAATTGAGTTAAGGTGGTCTTTTTAGTGTGACTATATGCTCTAATAGTTGTGTCGTGTTTGAGTTCCGGGAATTGGGCGAATGGACTCGCACTGTGTACTTGCAGTTGGAAAATTTTGCCTAGTTTTCACTTCTGCGCACCTATGAACATAGATGTGTCTTCAGGTGTTGAAAAGTTTATTTCTTCAATGTTTGTTACGAGCACCTAATGAATGTAGCCTATCCTACTAAGGGCTAtgaccttcaaactctgtgctcATTAGAGTAAGAAGTGACCCCTAACCACTGATACAGGAGAAAATATTTTCTCATCCCCCTATAGCTTAGCATTGATATGGGGTGTAGggaaatctgatcctagatctgtgtttGAGGCAACTTCTACCTTGTGTGTTCATTGGATGAGCTGAGTATTTTATTAGTGGTCAGTAATCTAGGATTGTTTTAAAGAGGAACATGCAAGAGATTGTAACTCCTAACAATGTTATTTCCCATTTTATGCTTACTGGACATGACCCAGAACTGCAAAGTTGCAGTGAACCTGCTGATGTGTTGTTTAAATAAAAACCTTGAATCCCA

Function

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1669853 lncRNA upstream 1103 50435819 ~ 50437567 (+) True atxn7l2a
TU1669850 lncRNA upstream 13884 50424385 ~ 50424786 (+) True G1459583
TU1669849 lncRNA upstream 14652 50423815 ~ 50424018 (+) True G1459582
TU1669842 lncRNA upstream 34040 50404376 ~ 50404630 (+) True G1459575
TU1669833 lncRNA upstream 46970 50391267 ~ 50391700 (+) True G1459570
TU1669887 lncRNA downstream 7132 50452780 ~ 50453450 (+) True G1459618
TU1669888 lncRNA downstream 7835 50453483 ~ 50453775 (+) True G1459619
TU1669889 lncRNA downstream 8444 50454092 ~ 50454584 (+) True G1459620
TU1669891 lncRNA downstream 10553 50456201 ~ 50456459 (+) True G1459622
TU1669871 lncRNA downstream 16823 50462471 ~ 50462950 (+) True G1459602
XM_036948187.1 mRNA upstream 1058 50427145 ~ 50437612 (+) False atxn7l2a
XM_036948188.1 mRNA upstream 1058 50427167 ~ 50437612 (+) False atxn7l2a
XM_036948189.1 mRNA upstream 1058 50427167 ~ 50437612 (+) False atxn7l2a
XM_036948190.1 mRNA upstream 1058 50427174 ~ 50437612 (+) False atxn7l2a
XM_021570334.2 mRNA upstream 15805 50408676 ~ 50422865 (+) True sypl2a
XM_021570323.2 mRNA downstream 43076 50488724 ~ 50500086 (+) False ldlrad2
XM_036948179.1 mRNA downstream 64771 50510419 ~ 50543166 (+) False LOC110494989
XM_036948180.1 mRNA downstream 64771 50510419 ~ 50543166 (+) False LOC110494989
XM_036948181.1 mRNA downstream 71739 50517387 ~ 50543166 (+) True LOC110494989
XM_021570336.2 mRNA downstream 212393 50658041 ~ 50664680 (+) True LOC110494982
TU1669855 other upstream 2964 50430807 ~ 50435706 (+) False atxn7l2a
TU1669722 other upstream 254974 50181165 ~ 50183696 (+) True LOC110494957
TU1668956 other upstream 999341 49439006 ~ 49439329 (+) True G1458807
TU1668189 other upstream 1398314 48933340 ~ 49040356 (+) True erc2
TU1668186 other upstream 1500648 48928347 ~ 48938022 (+) False erc2
TU1670065 other downstream 330881 50776529 ~ 50777072 (+) True G1459769
TU1670568 other downstream 449292 50894940 ~ 50897444 (+) True LOC110494047
TU1670644 other downstream 634484 51080132 ~ 51090889 (+) False G1460249
TU1674769 other downstream 3728366 54174014 ~ 54189617 (+) True G1464092
TU1674872 other downstream 3810733 54256381 ~ 54264616 (+) True LOC110494100

Expression Profile