RNA id: XM_036948179.1


Basic Information

Item Value
RNA id XM_036948179.1
length 5971
RNA type mRNA
GC content 0.50
exon number 22
gene id LOC110494989
representative False

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 50510419 ~ 50543166 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

atggccagaacagagcgaatggaatggcatcaaaacacacggaaaccatgtgtttgatgtatttgataccattccacttattccactcCAGCAATTAGCACATACaggtcctccccaattaaggtgtgaTGTATTCATCCCGGCAGGTTGCGGAGGGGAGGCGTGTGTCTGCCAGCTACCTTTCTGACACACTGTATCGTGAGGCCCAGGTGAGACAGTGTTTGTAAGGATTCTGAGCAGCACTCACACACCCGTGTCTACGTACATACACCTACAACTGAATAATTTTTCATAGTAGGAACCAAAGATGTGGATTTTATTCCACTTAGCAGCCCTGACAGCAGTGGCTGTGACCCAGAGGGACTGTTCTCGGGGGGCCTGTTACCCCCCTATGGGAGACCTGCTCCTCGGTAGGGAACATCAGCTTCATGCCTCCTCCACCTGCGGCCTTACCGGTTCTGAGGTGTTTTGCACCTACTTTGGACAGTGGAGGATGAAGTGCTGTACCTGTGACTCCAGGAACCCATCCAGTCAGTTGGCTCACACAATCCAGAACGTTCTATCCACCGCTGGACCCAACAGGTGGTGGCAGGCCAGGAAAGACGTGAGTCCGGTCACCCTACAGTTGGACCTACAGAACCTGTTTCAGCTGGACACCATCATTCTGACcttcaagGGTCCCCGTCCTAGTGCGCTGGTGGTGGAGAGGACGTTGGATAATGGTCAAACCTGGCAACCGTCACTCTACATGGCCTCAGACTGTCGCTCGGCCTTCCCTGGCATTGCCATGACTATGCCACGCTCTCTGGACCAGACCTACTGCTACACCCTACCCCCCGTCCCTGCTAACTCTTACCAGGACCAGACCATTCAGTTCAGCCCCTTGGGCCAGTTCTCTAGCATCAGCGTCCCCAATGGGCAGAAGATTCAAGAGGTGTCAGGATTGACAGGCCTGCGGGTGAAGTTGACTGAGCTGGGTGCTGTGCCCCGCTTGCCCGGCCGCACCCCCTCTCTGTTTTATGCCCTCGGAGAGATGACAGTGATGGGCACCTGCCTCTGCCACGGCCATGCCAACCGCTGTCTGCAGGATACTACTGCCTACCAGATGCCTAGCACACAGGTTAGTGCTCAGTGTGAGTGTCAGCACAACACAGCAGGTGTAAACTGTGAGCAATGTGCTGATCTCTACAACGACCTGCCCTGGAGATCTGCAGAggagggaaacacacacacctgcaaacGTTGTGAGTGTAACAACCACGCCCAGCGGTGCCGTTTCGACCCATCTGTGTATGAGGCGAGCGGATGGAGGAGTGGGGGAGTGTGTGAGGGCTGTCTGCACCACACAACCGGGCCCAAATGTGACCGCTGTGCCCCTGGATACCAACTCAACCACCGGAGCAGCATAGACCAGCCTGATGCCTGCATACGCTGCCATTGCAGTGCAGAGGGGGCGGAGAATGGGGGTCGGTGTGATGATGTCACAGGGTCGTGTCGCTGCAAGATGGGATACTATGGCCTGACTGCCTCCAACCCTCTGGGCTGCACGAAGTGCTTGTGCAGTGCAGAGGGCTccctgtccagtgtgtgtgaccCTGTGAGCGGTCAGTGTCCCTGTCGACCTTACCACCAGGGGCTGACTTGTGAACTCTGTTCCCGTGGTTACTggaacccctcctccccccacGGCTGTGAGCCCTGTCGCTGTGACCCCACCAACTCCCATGGTGACACCTGCGACCGGAGTACGGGTCAGTGTCAGTGCAGGTCAGGGTTCGGAGGTCGTACCTGTAcagaatgtcctgacaacacTTACGGAGACCCCCTCATTGGCTGCAGACtgtgtcaGTGTGCTGCCGGAGGCATGGTACCAGGAGGCTGTGATAAGCGTACAGGGGCCTGCCGGTGCCGCATTGGTGTCATAGGTACTCGTTGCGATGCCTGTAGCCGTGGCCATGTTTACTCCTTTCCCGACTGTGAAGTCTGCCCCTCCTGCTTCTTCTCTCTGGACTCCTACATCCAGAACCTCACCCTGGGCCTAGAGAGACTCTCCGCCAGAATCCCCTCTCGTCCTGGCGGCTCGTTGCCCACCGGTCTGGGTCTCCGCATCCAGGCCTTGGAGGCCACTCTCATCCAGATACGTGACTCTCTCCCACTCCCAACTCCCTCTATGAGACAAGTCAACGACGCCCTCTTTCAGCTACGCAGACTAAGGGACCAGTTAGATCAGGTGGATGGGGATCTGTCACCCCAAGGCAGAGGCCTCGAGCTGGGCTCACAGCTGGACGAGTTGCAGGCTCTCCTGGGCGGTCTGGGTCTGCTGTACAACTCCAAGAGAGATGCTCTAAGGAACCCTATCAACTCCAACAATGCAGGGGCCTTCTCTTCTATAAAGAATGCCTATGACGAGTCCACGGATGCGGCGAAGAGTGTGGATGCTAGTGGGAAGACTGTAGATCAATCTTCAGCGGTCAGAGAGGACGCTCTTGACCTCCAGAACCAGGTTCAACCAGAAAACACCAGAGACCTGGAGAAACTCAACCAGCAGCTGAACACCAAACCTGACCTCTCACCCACTGCCAAGCAGGTGTGTGGCAGTGTGCGCTCTGCCCCTTGTACCCCTGCCCAGTGTGATGGTGAGCTGTGCCCTGCGGAGGGGGCGCCACCCTGTGGTCGTGGCGAGAGTTGCGTTGGGGTTCTGCCTCTGGGGAACCGAGCTGTGAGGGATGCTGAGGAGGTAAAGGACAGACTGCAGCAGCTCAATGGGAAGATCACACAGGCTGCTGCACAGATCCAGAAAACACAGGACACGGTCAATCTGGTCAGACAGTCCACGGACGATCTGGGCAATCAGATGAGGCGGGCCAGGGATGACTTGGAGGCAGATCTGCAGGAGACAAGATACTTTGTTAAAGAGCTGAAGGACTTCCTGTCAGACCCGTCGTCAGACCCGACAGACATCAGCACGGTGAGTGAGTGGATCTTGAACGCCAAGCTGCCTCTCAGTCTGGCAGCTCTGAAGAGGAAGCTTCAGGAGATCAGAGCCCTGGCGGCAGGACTCCCAGACAGCAAAGCAGTCCTGGACCAGGCTGGACCACAGCTCGACACTGCCCGGCGGCTGCTACAGGAGGCCCAGGACGCCAGGGACGCTGGGCTGGGTGTGAAGGATGATGTTGACGGGCTGCTGGAGGGCTTCACAGCAGTGGAGGGCTCCTTCTCTGGCCTGAACGACAAAGTGCAGGACAGCCTGGACATAGTGGAAGACATCAGCAACAGTCTCGCACAGacCAAGGCCCAGTTGACTCCCGCAGTGAAGGCTCTAGGGGAGGTGTCTTCCCTGGCTGAGGGAATGAAACCTCAGCTGGTGGGGCTCAAGGTGCTGGTGCGCTCTGGAGGTCTGCTGGCCCAGAATGCTGAGGGAGAGGCCAAAAAGGCTAACAAGGAGGCAGATGCTGCGaccaggGACCTGGCGTCCCTGGAGAAGCAGCTGGAGCAGCTGCGTGCTGCAGAGAGGACCAGTGGTCATGGCGATGGGACGGGGACGACAGGTGAGCGTCTCCGGAAGCTGCAGGAGGAGGCTGGTTCTCTGGCCCAGGACACTGGAGACATAATGAAGGCACTAGCAGGTAAAGCAGACTCTCTGCGTAGACTACAGGATGAGGTCCTACTGAAGTCCCAGAGGCTGACCGGTCTGGACGGCAAACTGCGGGACCTCCTGGCTGACATGAGACAGAAGGTCAAGATCCTCTCCACCTGCCAGGGCTGAGAGGTAAAAGGGCAGAGGTCATCCTCAAATAGCCTCTTCATTGAGATAGAGGAGCGATGTTATTTATTTTGTCCCATTTTGTAGAATAAATGTcccaataaatatattttttcatgaCGTGCGGTTTTTAACTTTATCCTACGACATCCCAGTGACATCATTAGGCCTGGGATTTCTGGGGCTGCAGCCCTGAATGTTTTTGGTCCAGCCCCAAACCTTTTGATGAATATAGAAATTGCAGGATGTATGTCTGATATGAGTTCCCATACTGGCCTATCACTTACACGCTAGGCAGTATGCCGTAGAGACTGTTACGGAGTCTAGTTGACAAGGCTATTGAACCAGacattggtgtctgtctttattcctttatccaacatatcatactgaaacaGAGACTGTCATGATTTTAGCATTACTTTGCTGAAAACTGTGTGTCACTAGCCCAAACCGTTCAAAAGATGTGATCCATTTTAACGgagatatgttttatttatttttttactatcgTGAATTCGCTGGAAGCGGTCCCTGCCGCTTCAAAACCAGGCTACTTGGGGATCGCTAATTAGATGATTTGTTGAATAACAAACAAGCTTGTTCAGTCACGATACCTTAttagctaacaacctggtaactGGACAGGCACACATTTGGTTAAGATGGCACATGGAGAAAGAGATAGCGTACGTTTTATCCTAGTGGGGGGAGGGGGAAAAATAAATAGAGGGTGTAAATAGAGTGTAGTCTTGGGTAAGATTTGGACTATGCCATGTTGTCTTCAGGAGATTTTCTGTTTCATTTCTTTCCTTCACATTAGCTGATGTAAGATAGTGGAACAATTCCTATTCCTTATGATGTGCTATCCTATTATAGGATAATGAGTGTGTTTGTCAGCAAGAACAGTACTGTTATTCCTCATAAATCTTTTATTATTACACTTCTTCCCAATTTTGCTGGTGTAACTACTTATTTGAAATCTAATTTGCCTAAATTAGAAGAGACTTTCCATGTCATGTGGGTATATACGCTATGTCATGGTCATGTGGGTATATACGCTATGCCATGGTCATGTGGGTATATACGCTATGTCATGGTCATGTTGACTGTAAGTCATAAAAACAAGAATAGCCCATATTGAAATGCCTGTTACATCAATTATTCTATGTATTTTAGTAGTGTACACAAGCTGCTAGGCAGTGATGGTAAGGGGACTCTCAATAGCTCATAAATGCAAACGATCTTGCCCATGTAATGTAAGATGACAAGAGTCGGCAACTAGTCAGCCCCACCACCTATAGATTTGTCTTGATTGTGGGGTGACTTGAAGAAATGAATTGTTATAGCATAAACATTTTCAAACCCCCTGCACTTGGGAAACATACCCCCGCAGGAATTTTCTTTCTTCAAGCTgtattttaaagggatagttcacccactTTGTAGAAAAGGCTctcatttgcaatatactttttAGGGAACTGTCCCTTTAGTTGCACTTTTTTTTGTTAACTTTGCCTTTAACTGCAGACACTTCTGAGCCATCACAATATAGGCTTTTGGGCACTGGATacctctatacatctctatgctTTTTATTGtttggatttgtgtgtgttttgtattgttgGTATTGCTACACTGCTAGAGCTAGACatctgcgataacatctgcaaaatatgtgtacacgGCCAATAACATTTGGTTTGATTTTGCTCTGAGCGCACCTGCAACCAATTCCCTTATTAAATACCTGAGTTCCCTTTGTCTTTAGTTCAGTACCAAAGATCCCATGCCTCTTGAAAATACTCTCCAGCGTTTATCCGTTTTCGTTTCTATTATCTGTGCATCCAATACCCAACGTGAGTAAACCGCAATATTGTTTCCATTTTACTTTCTTGTTTCATGTGTGAATGTATGAGCATTTAATGATGCGCTGTCGTATCAGTAGTGGTAGACTGTTGAGTTGTTGCAGCATGTTGCCAATGGACATTAATAATTCAGATATTTTGTTTATCCTTCAAAGATTGATGATACTGACATGGAAATAATGGGTATGATAATTATGTTCATGTTTATTCTTAATATGAAATTTCCTAACGCAAATGTTTAgctttctatgttgtgtttattatTTTTAGCACACAAGTCAATAATGAATTATGATTTATTGGAGAAAATAAACGGGAGCTGCAGCTCTCTAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1669869 lncRNA upstream 5907 50504266 ~ 50504512 (+) True G1459600
TU1669861 lncRNA upstream 6291 50502966 ~ 50504128 (+) True G1459592
TU1669909 lncRNA upstream 14052 50495998 ~ 50496367 (+) True G1459640
TU1669865 lncRNA upstream 19224 50483057 ~ 50491195 (+) True ldlrad2
TU1669871 lncRNA upstream 47469 50462471 ~ 50462950 (+) True G1459602
TU1669927 lncRNA downstream 688 50543854 ~ 50544820 (+) True G1459656
TU1669949 lncRNA downstream 26084 50569250 ~ 50573859 (+) True G1459673
TU1669955 lncRNA downstream 32690 50575856 ~ 50576144 (+) True G1459679
TU1669940 lncRNA downstream 34851 50578017 ~ 50578669 (+) True G1459666
TU1669957 lncRNA downstream 39029 50582195 ~ 50582491 (+) True G1459681
XM_021570323.2 mRNA upstream 10333 50488724 ~ 50500086 (+) False ldlrad2
XM_021570335.2 mRNA upstream 64771 50438670 ~ 50445648 (+) True LOC110494981
XM_036948187.1 mRNA upstream 72807 50427145 ~ 50437612 (+) False atxn7l2a
XM_021570336.2 mRNA downstream 114875 50658041 ~ 50664680 (+) True LOC110494982
XM_036948177.1 mRNA downstream 122012 50665178 ~ 50697862 (+) False LOC110494953
XM_036948178.1 mRNA downstream 128007 50671173 ~ 50697862 (+) True LOC110494953
XM_021568722.2 mRNA downstream 158996 50702162 ~ 50708829 (+) True kctd20
XM_036950039.1 mRNA downstream 185875 50729041 ~ 50748688 (+) False LOC110494040
TU1669855 other upstream 74713 50430807 ~ 50435706 (+) False atxn7l2a
TU1669722 other upstream 326723 50181165 ~ 50183696 (+) True LOC110494957
TU1668956 other upstream 1071090 49439006 ~ 49439329 (+) True G1458807
TU1668189 other upstream 1470063 48933340 ~ 49040356 (+) True erc2
TU1668187 other upstream 1575082 48928347 ~ 48935337 (+) False erc2
TU1670065 other downstream 233363 50776529 ~ 50777072 (+) True G1459769
TU1670568 other downstream 351774 50894940 ~ 50897444 (+) True LOC110494047
TU1670644 other downstream 536966 51080132 ~ 51090889 (+) False G1460249
TU1674769 other downstream 3630848 54174014 ~ 54189617 (+) True G1464092
TU1674872 other downstream 3713215 54256381 ~ 54264616 (+) True LOC110494100

Expression Profile