RNA id: TCONS_00046294


Basic Information

Item Value
RNA id TCONS_00046294
length 806
RNA type mRNA
GC content 0.47
exon number 5
gene id XLOC_023408
representative False

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 20589458 ~ 20641000 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GAGGGTCTGGGTCAGAAGGTGAAGCTTGAAGAAAAGCAGCACTTTTCTTGCAAAAAGTGCCCTCGTGTTTTTAACAACCGCTGGTATTTGGAGAAGCACATGAACGTCACTCACAACCGCATGCAGATCTGCAACAAATGTGGCAAGCGCTTTTTACTGGAGAGCGAGTTGCTGCTGCATCATCAGACTAACTGTGAGAAAAACATACAGTGCGTGACTTGTGGaaaagcttttaaaaagctgtggtCTTTACACGAACACAACAAGATTGTCCATGGATACGCCGAGAAGAAGTTCTCTTGTGAAATCTGTGAAAAGAAGTTTTACACCATGGCACATGTCCGGAAACACATGGTTGCTCACACTAAGGACATGCCGTTTACCTGTGAGACATGTGGGAAGTCCTTCAAACGCAGCATGTCTCTTAAAGTGCACTCGCTTCAGCACTCTGGAGAAAAGCCCTTCAAGTGTGAGAACTGCAGTGAACGATTCCAGTACAAATACCAGCTGAGGTCACATATGAGCATCCATATCGGACATAAGCAGTTCATGTGCCAGTGGTGTGGGAAAGACTTCAACATGAAGCAGTACTTtgatgaacacatgaagacaCACACTGgagagaaaccatacatCTGTGAGAtctgtggaaagagtttcacgaGCCGGCCCAATATGAAACGTCACCGCCGCACACACACTGGCGAGAAGCCGTACCCCTGTGACGTGTGTGGACAGCGTTTCCGCTTCTCCAACATGCTCAAAGCCCACAAGGAGAAGTGTTTCCAGGTTAGCAACCCCATGGC

Function

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0005634 nucleus cellular_component
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-091118-34 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Orthologous to human ZBTB47 (zinc finger and BTB domain containing 47).

Ensembl:

ensembl_id ENSDART00000141823

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00047175 lncRNA downstream 88377 20450027 ~ 20501301 (-) False XLOC_023407
TCONS_00046291 lncRNA downstream 88377 20470778 ~ 20501301 (-) False XLOC_023407
TCONS_00046288 lncRNA downstream 118687 20450615 ~ 20470991 (-) False XLOC_023407
TCONS_00046290 lncRNA downstream 120388 20450838 ~ 20469290 (-) False XLOC_023407
TCONS_00047174 lncRNA downstream 404653 20181997 ~ 20185025 (-) True XLOC_023400
TCONS_00046315 lncRNA upstream 537295 21137175 ~ 21139396 (-) False XLOC_023418
TCONS_00046319 lncRNA upstream 626653 21226533 ~ 21228953 (-) False XLOC_023420
TCONS_00047176 lncRNA upstream 626653 21226533 ~ 21231171 (-) False XLOC_023420
TCONS_00046320 lncRNA upstream 628989 21228869 ~ 21231171 (-) True XLOC_023420
TCONS_00046855 lncRNA upstream 731136 21331016 ~ 21369754 (-) False XLOC_023421
TCONS_00046287 mRNA downstream 57865 20450027 ~ 20531813 (-) False XLOC_023407
TCONS_00046289 mRNA downstream 58204 20450804 ~ 20531474 (-) False XLOC_023407
TCONS_00046285 mRNA downstream 144834 20418959 ~ 20444844 (-) True XLOC_023406
TCONS_00046284 mRNA downstream 219918 20359130 ~ 20369760 (-) True XLOC_023405
TCONS_00046282 mRNA downstream 220074 20332979 ~ 20369604 (-) False XLOC_023405
TCONS_00046296 mRNA upstream 43778 20643658 ~ 20658446 (-) False XLOC_023409
TCONS_00046298 mRNA upstream 51120 20651000 ~ 20652473 (-) False XLOC_023409
TCONS_00046299 mRNA upstream 51978 20651858 ~ 20656773 (-) False XLOC_023409
TCONS_00046300 mRNA upstream 52268 20652148 ~ 20656773 (-) True XLOC_023409
TCONS_00046301 mRNA upstream 108294 20708174 ~ 20808283 (-) True XLOC_023410
TCONS_00046286 other downstream 58092 20450027 ~ 20531586 (-) False XLOC_023407
TCONS_00046292 other downstream 118588 20470954 ~ 20471090 (-) True XLOC_023407
TCONS_00046277 other downstream 402248 20187316 ~ 20187430 (-) True XLOC_023401
TCONS_00046272 other downstream 535421 20032331 ~ 20054257 (-) False XLOC_023397
TCONS_00046273 other downstream 550528 20032340 ~ 20039150 (-) True XLOC_023397
TCONS_00046297 other upstream 47595 20647475 ~ 20658668 (-) False XLOC_023409
TCONS_00046316 other upstream 539442 21139322 ~ 21144300 (-) True XLOC_023418
TCONS_00046357 other upstream 1363172 21963052 ~ 21963168 (-) True XLOC_023437
TCONS_00046358 other upstream 1364170 21964050 ~ 21968116 (-) False XLOC_023436
TCONS_00046365 other upstream 1471341 22071221 ~ 22097763 (-) True XLOC_023443

Expression Profile

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