RNA id: XM_021570336.2


Basic Information

Item Value
RNA id XM_021570336.2
length 3230
RNA type mRNA
GC content 0.44
exon number 2
gene id LOC110494982
representative True

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 50658041 ~ 50664680 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tttggcgtccccaggactgagtttagGAAACGCTGGATTAAGCTGTCTAAGAGATCAGTGAAGTCTGACTTGACACAACTTAACGCAGTAAGGTCGGGCTTCTCATTGATGTTAAACTATCATTAAACAATCTAATCGCCACTGGGAGTGGGTGTATTTATAAAATACCACACCTGCGATACTTCTTTAAGCCAAAAACAATATCTTCATCTCAGTTGATCTCCCACCCATCTCTTTGTGGGTGGGGCGTCCAGGGGTGAGAGTAGGTAATACCTGGGATCCACCTCCCACCTGACACACTGCTACAGAAGACATTACCGACCACACCATCACGGAACACCTGAGAGGAACCACGCCGAGGTCCTCACCCCAGACAGAGAACCCCAGGCTGGGTAGGGTCCTGCCTGTCTCCCCCCCGAACACCTGGAGGCCTGGTGCTAAATGTGGAGGACCCTGAGTATCACCTGTTCATCTGAAGATCTACAAGAGGAGAGTGTTTGATGATGAAGCTCCACCTTGTTTCTCCTTCTACTTGAGGTGAACAAGTTCACCAGAAAACTGGATGCCACAAGTGGAGGAAACTCACAACTCGCTGCTCCGATTCCTTATCCATCCATTTGtcttaagtctctctctctgttcacacCATCACCATGAGTGCTGTCTTCTCCCACCCCTTCGTAGACCAGCGGCCCACCTAcctaaacagaggcagcagcctGCCGTATGGTCTGTCTCCCTCTAGTGGCTACTCTGAAAACCGCCCAAACACCCACTCCAACCGCCTCCACTCTGGCTCTGACCCTCTGGCCCACACAGTGCCCTTCCTCCTCTACCCCACCACAATGGACCCTGGAGGCCTCTATGAAGCCTCGTTCCGGGGCCCCGGAGGCCCCAATCTCCTCCCCTACCTGTCCCCATTCCACCACGGGCACTTTGGGGTGTACGAGTGCCCCTTCGAGCCAGCGTTCATCCAGAAGCGTAACGAGCGGGAGCGTCAGAGGGTGAAGTGTGTGAACCAGGGCTATGCCAAGCTGAGGGACCACCTGCCCGGGGGTGTCAGTGAGAAGAGGCTCAGTAAAGTGGAGACACTGAGGGCAGCAATTAATTATATTAAATACCTGCAGGGGCTGGTGGAGGGGCAGGGGAAGGGCAGAGATGGGTATGAGGGGGGACAGGTGTGCCACAGCCCCAGTTCTGCCCACTGTAGGACGGAGGACTCGGACCACAGCAATGGGGGgtcacctcactctctctcagactcctcctcttcctccgcgGGGATAGACTGTGAGGAGTCAGCGGGCTCTGGGACCTAGATGATTGTGGGTAGTATAGTTTGTGAGCGAGACTGTGGATAGACATTTGTGGATTGAGGTAGGACTTCCCTCTCTCCAAGGACTGCTCACGAAAACATCAAACCCTGAGCACGAAGATATATAATTTAAGACTTATTCCAGTAGATACTATGTAATGTATTGGCAATGTGTCTTGTTTTTTTtgccactaaaatgttttaccAAACCACTTTCAGATGCTGATTATGTTAAAGAAGATGTCACGAACACTTTAGATTTGAAGATAAACATCTGAAACTCAGAAAGcaatcccagctagcacataacattctgagaacagcTCTACGTTTTTAGAGCTTGGTGAGACCGTGGATGTCCTTTGGTTATTTTGCACACAGCCTTCCATCAACTGTTTGGGAATGGTGCATAGTTGTTTGGCTTTGGAATAGTCTCCACTCATTTCAGGAACTTGATTAAAACAAAATCTTACTATTTCATTACATTAAAAGAAAGTTTCCGAAATGGTCAAACAgggttacatttcatttcaattttgGTAATTATCTTGGAATGTTCTCTAACTGGTTCGACGTTGGGAATGTTCTCAACGagttcagagaatgttaagaaacaatgttgttctgtgggaatttcaggacttcagcataatgtttcctacaggtttcctcatggttctatttaaagtcacgttctcaaattgttccaagaACGTGAAGAAAACTtcccattaaaaaaacatttgatgcTGAGAACATACACATTCCATTCTCAGcctcaacaaaactctctctatctaCTATCCTGttcagtgtgttcaggtgtgttggctgtgcccactaattggccacacctgatcttattGAGTGctgttttcctttgaaatggggtctgtttgaacaGACTAAAATAAACAGCCTTGTATGCATAAAAAACAaagcatgctagctccatcctggtggcgcagTAGACTAATTCAATGAATAGAGAAGAGAAGATTATAGATTTGAATCTCACGAAATAAAAAAATCTGTAATAAAtatgtttgcatgattaatgcctaaggaaaggaatttccatgtgtcctatttGTGCTTGGATTTCAAGAAGTAAACCCCAAATAatctagcagtgttattaaaagactttcagtgaaagttttaaggaagttattaAAAAACCTCAAAATAACCTCTAATTTCAGTTCTCAGaccgttaataaaacctcccaggaaaacgttcaaggaaccagagtaaaatgttctcagaacctctctgcaACCTAAAAATAACAGTCCCAGAACAGTCAAAATGTTCACTgtctgttctcagaacgtttaaaaaacaTTCAGTTCCTACAACCAATGTGAAACTAAAAACATACGtttccacaacttccaaggatCCAAATGTGTTAATTGGGACAAATTCAAGTATGCAATGTTTATTGTGTTTCAAAATGAAAAACTGACCATTGTAGCAACACGTTACTGTTATCAAAAGAAACTGTATTTCCCAAAACAAACTGTGGTTAATTTTATTACAGCGCATGACATCTTTTGGAAATTTCAGGTGATATTAAGTCACAAAACTGGTAATAAAGTAATGTGATTCCTCTTTTCACGAATAGAGTTTTTGGTAAAGTAACAGATTCTACAATGGGACAACTGATACTTGGAtgcaattttttttggggggggggggggggttagacagTATTCATAATGGTGTTAATCTAATTACTCTAATTTGTTGTAGTACTGTAGTTCACCATAATTGTGCTCATTCCTCAGACCTGGGGCCTGTCATTAATGTTTGGTTGCTGTGTTTGCGTTCTATATATACAAAGCCTTTCACAAACCCTGTTATTTAATAAAAAAGCATTGGGCATGATAGAGCACAAATTGATACCAT

Function

GO: NA

KEGG:

id description
K09067 ASCL; achaete-scute complex protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1669970 lncRNA upstream 7794 50644899 ~ 50650247 (+) True G1459693
TU1669864 lncRNA upstream 25671 50585636 ~ 50632370 (+) True G1459595
TU1669957 lncRNA upstream 75550 50582195 ~ 50582491 (+) True G1459681
TU1669940 lncRNA upstream 79372 50578017 ~ 50578669 (+) True G1459666
TU1669955 lncRNA upstream 81897 50575856 ~ 50576144 (+) True G1459679
TU1670005 lncRNA downstream 44255 50708935 ~ 50711323 (+) True G1459724
TU1670051 lncRNA downstream 96352 50761032 ~ 50761269 (+) True G1459756
TU1670060 lncRNA downstream 106365 50771045 ~ 50771281 (+) True G1459764
TU1670067 lncRNA downstream 113079 50777759 ~ 50778334 (+) True G1459771
TU1670088 lncRNA downstream 146122 50810802 ~ 50811017 (+) True G1459792
XM_036948179.1 mRNA upstream 114875 50510419 ~ 50543166 (+) False LOC110494989
XM_036948180.1 mRNA upstream 114875 50510419 ~ 50543166 (+) False LOC110494989
XM_036948181.1 mRNA upstream 114875 50517387 ~ 50543166 (+) True LOC110494989
XM_021570323.2 mRNA upstream 157955 50488724 ~ 50500086 (+) False ldlrad2
XM_021570335.2 mRNA upstream 212393 50438670 ~ 50445648 (+) True LOC110494981
XM_036948177.1 mRNA downstream 498 50665178 ~ 50697862 (+) False LOC110494953
XM_036948178.1 mRNA downstream 6493 50671173 ~ 50697862 (+) True LOC110494953
XM_021568722.2 mRNA downstream 37482 50702162 ~ 50708829 (+) True kctd20
XM_036950039.1 mRNA downstream 64361 50729041 ~ 50748688 (+) False LOC110494040
XM_036950040.1 mRNA downstream 64361 50729041 ~ 50748688 (+) False LOC110494040
TU1669855 other upstream 222335 50430807 ~ 50435706 (+) False atxn7l2a
TU1669722 other upstream 474345 50181165 ~ 50183696 (+) True LOC110494957
TU1668956 other upstream 1218712 49439006 ~ 49439329 (+) True G1458807
TU1668189 other upstream 1617685 48933340 ~ 49040356 (+) True erc2
TU1668187 other upstream 1722704 48928347 ~ 48935337 (+) False erc2
TU1670065 other downstream 111849 50776529 ~ 50777072 (+) True G1459769
TU1670568 other downstream 230260 50894940 ~ 50897444 (+) True LOC110494047
TU1670644 other downstream 415452 51080132 ~ 51090889 (+) False G1460249
TU1674769 other downstream 3509334 54174014 ~ 54189617 (+) True G1464092
TU1674872 other downstream 3591701 54256381 ~ 54264616 (+) True LOC110494100

Expression Profile