RNA id: XM_036948177.1


Basic Information

Item Value
RNA id XM_036948177.1
length 7132
RNA type mRNA
GC content 0.51
exon number 42
gene id LOC110494953
representative False

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 50665178 ~ 50697862 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctcagaaagggagagagagagggggaatgccCGAGAAAGAGTACAGGGAGATATagacaacagagaggagagaggagtgttgTGGAAGAAATGAGTGCCTACCCAGCAGGTTATGAAGAGGACCAGTAGGACCTGGACTAGTTGAGCAGGTGAATCGCTAGCTGACCTGGTGGAATACAGCACTGAAAGCAACCATCTTCACTTGGGCTAGGATCTGGACGACCAGGTCAAGTTGGGGGTACAGTAGCTGGCTGGCTGAAGAGGCCATTTTAGCGACCATCTTCACTTCCTCCAAATTCCCCAGGTAGAGCCAAGATGGCGGAGAGTGGCGGCGAGCCTAACCTGCAGTCCTACATTATGGACGAGGAAACTCTGAAGAGGAAGCAGAAGGAGAAGCTGAAGAAGCTCCTGGCCACGGGGGGAAACCCTCGGCCCGCACGCTCCCTCTTCTTCCTCACATTGAAGAACCCCTTCCGCAAGGCTGCCATCAACATTGTGGAATGGAAACCGTTTGAGATCATCATCCTGCTGACCATCTTTGCCAACTGTGTGGCCCTGGCTGTGTTCCTGCCCATGCCTGAGGAGGACAGCAATAACACCAACAGCAACCTGGAAAGTCTGGAGTACATCTTCCTCATCGTCTTCTCCATAGAGTGCTTTCTAAAAATAATAGCCTATGGATTTCTATTTCACGAGAATGCGTATCTGCGGAACTGTTGGAACATACTGGATTTTGTCTGTGTATCTGTGGGgctGTTTGCAGTCATCGGGGACTTCATCACCTATATCAGTGGTGTGGAGGCTCAACCAGGGGACAAGGGAGGAGGCTTCGACATGAAGGCCCTCAGGGCATTCAGGGTGCTCCGGCCCCTCAGGCTGGTCTCTGGAGTCCCCAGCCTGCAGGTGGTGATGAACTCCATCCTGAAATCCATGCTACCTCTGTTCCACATCTCCCTGCTGGTCTTCTTCATGGTCACCATCTACGCCATCGTGGGACTGGAGCTGTTCAAGTGCAAGATGCATAAAACCTGCTACTACACAGGCACAAATATCATAGCCACAGTGGAGAATGAGAAGGCATCTCCATGTGCCCAGGCCGGTAATGGTCGGCGCTGCACCATCAACGGGACAGAGTGTAGGGCGGGATGGGCCGGACCCAACAACGGCATCACACACTTTGACAACCTGGGCTTCGCTATGCTCACTGTCTACCAGTGCATCACTACCCAGGGCTGGACCGACGTGCTCTACTGGgtgaATGATGCCATCGGTATGGAGTGGCCGTGGATGTACTTTCTGACACTCATCTTGGTTGGCTCCTTCTTCGTACTCAACCTGGTTCTGGGTGTGCTCAGTGGTGAATTCACTAAGGAGCGAGAGAAGGGTAAGGCGCGTGGAGAGTACACAGAGATGAGGGAGACCCAGCAGCTGGATGAGGATCTGAAGGGCTACATGGAGTGGATCACACAGGCCGAAGTCATGGACGCCGATGGGGAAGGACAGGGCCTGCTAACGCTGGAGGATGGAGAATCTGAGGCAGGGAGCCTAAAGGACATGGACACCATGCAAAAAATAATGTACTACTACAAGCTGGCTCGTAAATGGAACATTTTCTTCCGGCGTAAGTGTCTTGTGTATGTGAAGTCCCGTATGTTCTACTGGTGGGTGATCCTTCTGGTGTTCCTGAACACGCTGGCCATCGCTACTGAACACCACAAGCAGTCCCAGCAACTCACCGAGTGGCAAGACACTGCCAACAAGGTGCTGCTGTCTCTGTTCGCCATTGAGATGTTTATGAAGATGTACGCCCTGGGTCTCCAGCAATACTTCATGTCTCTGTTCAACCGCTTCGACTGCTTCGTGGTCTCCACCGGCATTCTGGAACTCGTCCTGGTCGGCATGGACGTCATGACCGTCATGGGGATCTCTGTGCTGCGCTGCATTCGACTCCTCAGGCTGCTCAAAGTAACCAAgTACTGGACGTCTCTCAGTAATCTGGTGGTGTCCCTGCTGAACTCAACCCCCTCCATCGCatgcctgctcctcctcctcttcctcttcatcgtCATCTTCTCTCTGCTGGGCATGCAGGTGTTCGGGGGGAAGTTCAACTTCCCCAATGCGCCCAAACCCCGCAGCACCTTTGACAGCTTCCCCCAAGCTCTCATCAGTGTCTTCCAGaTCCTGACGGGGGAGGATTGGAACTCTGTGATGTATGATGGCATCATGGCGCATGGCGGTCCCACCATGCCCGGGATCCTCGTCAGCATCTACTTCATCATCCTCTTCGTCTGCGGAAACTACATCCTGCTGAATGTGTTCCTGGCCATCGCCGTGGACAACCTGGCGGAGGCTGAGAGTCTGACCATGGCCCAGAAGGAGAAGTCTGAGGAGAAGAAACGCAAGAAGCTGCTCAGGGCTAACATGCCTGACAAGGCCACAGAGGAGAAAGCCCTCCTGGCCAAGAAGCTTGCAGCGGAGAGAGCCAAAATAGAGGGCATCCCTACCACAGCCAAGCTGAGAGTGGACGAGTTTGAGTCCAACGTGAACGAGATCAAGGACCCCTTCCCGCCTGCTGACTTCCCTGgtgatgatgaggaggaggagcctGATATCCCTGACACCCCGAGGCCACGGCCAATGGCAGACCTGCAGCTGAAGGAGGAGGTGGTGCCTATTCCAGAGGCCAGCTCCTTCTATATCTTTAGCTCTGATAACAAGATCCGTAAGCTGTGCCACCGCATCATCAACGCCACCGCCTTCACCAatatcatcctcctcttcatcctcctcagcAGCATCTCCCTGGCTGCCGAGGACCCTATCGACCCCATGTCCTTCAGGAACCAGGTGCTGGCCTCCGCTGATGTGGTCTTCACCTCAGTGTTCACTGTGGAAGTTGTCCTCAAGATGACCGTATACGGCGCCATCATGCACCCCGGCTCCTTCTGCCGGAACTCCTTTAATATCCTGGATCTGATTGTGGTCAGCGTATCCCTCCTCTCCATGCTCATGGAGTCCAGTGCTATCTCTGTGGTGAAGATCCTCAGGGTGTTGAGGGTGCTGAGGCCCCTAAGGGCCATCAACAGGGCCAAGGGCCTCAAGCATGTGGTCCAGTGTGTTTTTGTGGCCATCAAAACCATTGGCAACATCGTGCTGGTCACCATGCTGCTAGACTTCATGTTCGCCTGCATTGGAGTCCAGCTCTTCAAGGGCAAATTCTATGCCTGCACAGATCCTGACAAAATGACAGAGGAGGAGTGCAAGGGCAACTACATTAGGTACCAGGAAGGTGCCATCCATCCGATGACCATCCATAAGAGAGAATGGATCAATGCAGAGCTCAACTTTGACAACATCCTCGAAGGCATGCTGGCTCTCTTCACTGTCTCCACCTTCGAGGGCTGGCCAAAgtTGCTCTACAAGGCCATAGACTCTAACATGGAGGATATGGGTCCGGTGTACAACAACCGCATCGCCATCTCCATCTTCTTCATCGTCTACCTCATCCTCATCGCTTTCTTCATGATGAACATTTTCGTGGGTTTCGTCATCGTTACATTTCAGGAGCAGGGAGAACAGGAGTACAAGAACTGCGAGCTGGATAAGAACCAGCGTGCGTGTGTTGAGTACGCCCTGAAAGCCCGGCCGCTGCGCTGCTACATTCCTAAGAACCCGTACCAGTACAACGTGTGGTACATCGTCACCTCCTGCTACTTTGAGTACCTGATGTTCCTGCTCATCATGCTGAACACCATGTGTCTGGGGATGCAGCACTGTAACCAGTCAACCCATGTGACCGACCTGTCAGACATGCTGAACGTGATCTTCACTGTGCTCTTCACTGTGGAGATGGTCCTCAAACTCATGGCCTTCAAAGCTAAGGGTTACTTTGGAGACCCTTGGAACGTCTTTGACTTTGTCATCGTCATCGGCAGCGTCGTTGACGTCATCCTGAGTGAAGTCGATGCAGCCCTGGCCTCCTCTGGAGGACTATACTGTCTCCACGGCTGCGCTGAAGTGAACCCAATGCAAGCGATAGCAGATTCTGAAAATGCCCGTGTGTCAATCACCTTCTTCCGACTGTTCCGTGTGATGCGTCTGGTGAAACTGCTGAACCGTTCTGAAGGGATCCGGAACCTTCTGTGGACCTTCATCAAGTCCTTACAGGCCCTGCCCTACGTCGCCCTGCTCATCCTCATGCTGTTCTTCATCTATGCTGTGGTTGGGATGCAGATATTTGGTAAGATAGCGCTAATAGACGGGACGTACATCAACAGGAACAACAACTTCCAGACGTTCCCCCATGCTGTGCTGCTGCTCTTCAGgtgtgcGACAGGTGAGGCGTGGCAGGAAGTAATGTTGGCGTGTCTGTATGGGAAGAGGTGTGACCCTAAGTCAGACTACCTGCCTGGGGAGGAGATGACCTGTGGAGCCAGCTTCGCCATCATCTACTTCATGAGCTTCTACATGCTCTGTGCCTTCCTgATCATCAACCTGTTTGTGGCggtcatcatggacaactttgaCTACCTTACACGTGATTGGTCCATCCTGGGTCCTCATCACCTGGACGAGTTCAGGAAGATCTGGGCAGAGTACGACCCAGAGGCcacGGGGCGTATTAAGCACCTGGACGTGGTGACTCTGCTGCGTAGGATCCAGCCTCCTCTGGGTTTTGGAAAGTTCTGCCCCCATAGAGTAGCCTGCAAGAGACTGGTGTCCATGAACATGCCACTCAACAGTGACGGAACGGTCACCTTTAACGCTACGCTGTTCGCACTGGTCAGGACCGCGCTGAAGATCAAGActgaagGAAATTTTGAGAAGGCCAATGAGGAGCTGAGGGCCATCATCAAGAAGATCTGGAAACGCACCAGTATGAAGCTGCTGGACCAGGTCATCCCACCAATCGGAGatgatGAGGTGACCGTGGGGAAGTTCTACGCCACCTTCCTGATCCAGGACTACTTCAGGAAGTtgaagaagagacaggaggagtacTATGGCTTCCGCCCCACCAAGAAGAACGCCAAGAATGAGATACAGGCAGGTCTGAGGAGCATTGAGGAGGAGGAAGCTCCAGAGCTGCAGAGAGCCATCTCCGGAGACCTGATGAACGAGGAGGAGATGGACAGAGCCATGGAGGACGCAGCAGAGGAGGGTATCTTCAGgCGGGCGGGCGGTCTGTTTGGGAACCACGTTGATTCCTTCACCATGGAGGAAGGAACCCGTGACCCTAACGCTACACAGGTGACCAGCCAGCGGCCCCTGCAGATGAGCAGATCAGACGACGGGGAGGCTACCAGTTCACCTGCCTACCATGCAAACGAGGACTTCTTCCCCTCAACGCCTAACAAAACCAACAACAACAATGTCAACAACAGTGCCGGGgagagCTTTTCTTGTGGGACATATGACCGGGTTCAGGTCTATACCATCTCAACCAGCAGAAGTCCCCCAGACAGAGACTGGCAGCTGCAGACAGTAGGTGGGCCCAGGCAGGATGCTGAGCCCCACAGAGAGCCGCTCAGCCTCCAGCAGGCCCAGGGCCCAGACAGCGCCTTCGATACACTTATACAGGAGGTCTTGATAAACGGTGGGCTGGAGAGCTTGGCCAGGGACCCTCGTTTTGTGTCGGTGACAAAACGGGAAATGGCTGAAGCGTTAAACTTTGACCCTATGGACATGGAAAGTTCCGCCACTGAGCTTATGAATGGTCGCAGAGGGAGCGTTGTCACGCCTCCAATCAGGCCCCCTCGCAGATCACAGAGAAAGGCCAACCAATCAACAACACCCAGGGATGTTGTGTAGGCCAATAGGTCTGTCTGGCGTAGCAGCATAATaaagagacacgtgatcgtattcaaatgtaagcaaggtttgaaatgattacgCTTTAGTCAAATATGATATCTGTTTTGGCTTCTTGCAGTCaaattgcagtctacaaatgatttgtaattatgttccgttCCCCCGACCATCACTCAAGAAAAATCGTCATGAGGCCGAATCAAGCTGCCTCATTGGGTGCCTTCATAGCGAGTGATATCATCTGATTGGTTAAGCAGGCTTTATGAATCCACTGTTGTCGTGATATTCTGACTTTGGATGATTTCTCTCTTGGTTGATTTAAAGACTTTCCCCGGAAGAGAGCAGACTTACGATATGTGAACATTTCTTTACCATGTTATGTTCACAGAACAGACTTCCTGTTCGGACATACGTTGAGTTCAGGTGAACATCCCGTCGTCCCGATTAAACATGTTCTCAAGTCTCAACTTAAGGAAGTTTTGCTTGCATAAAATGTCGGCCCTGTTTGAAAACGAATGTCTTTCCCTCCATCCTTGAAGTAATCACTAATGCACCTGTAGTTGGGTAGGTACTGAATACGGTTGTGTGAGTGATTAGCTCAAAGAGGAAGGGAAGGTTGTGTTTTCTAAGTATTCTTGCAGGGTCCGGACGTTACTTTTCAGGGGACATTCTTTGAATTCTGTCATGACGACAAGGCAAGACATAGCTGGGTCAGGATGTCTCTGGGCTGGATCATGtatacggtgtccatattaggaccaTCTCAGGATGTAAGCTGTGTTGACAAAGCTAACGGGCATGTTCAAGATACACACATTCTGTACAGATCTCCACATATCAACATGTATTCACAATGCCTGGACTTTTTTTGCTAAAAAATCCCATATCTCAAACATGTACATCATCTTCAGCACGGAGAGGATGACCATGTAGTGTAACATGGGAGAAAAGCCTTGTGGTGTAGGGTAGTCACTAGCTGGCCATGCTACTGTAGAATGTGCAGATAAGAGGATGTGGTTAAAGACAAGGTTAGGATGAAGAGTAAGGTTAGGGTCAATGTTTGGGATTGTATTTGTGGTTAGCGAGCAGTGTGTATGAGATATGGACAACTTATGGTATAGTATACTAAGGGTTTAAAGTCCTCCCTGTAGATGGCATTTTGTCTGTTCTTCTATTTTCTTTTTGAGGTAGGGCAATTTGGTTGAAACCTACAGCCTTTATTATGAAAATTAAATGTTAGATTACTTATAAAGAATAATAATTGTTGTACCTGTAACCCCCCCCAACTAAATAAATACGAAATAAAACAATTTGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1669970 lncRNA upstream 14931 50644899 ~ 50650247 (+) True G1459693
TU1669864 lncRNA upstream 32808 50585636 ~ 50632370 (+) True G1459595
TU1669957 lncRNA upstream 82687 50582195 ~ 50582491 (+) True G1459681
TU1669940 lncRNA upstream 86509 50578017 ~ 50578669 (+) True G1459666
TU1669955 lncRNA upstream 89034 50575856 ~ 50576144 (+) True G1459679
TU1670005 lncRNA downstream 11073 50708935 ~ 50711323 (+) True G1459724
TU1670051 lncRNA downstream 63170 50761032 ~ 50761269 (+) True G1459756
TU1670060 lncRNA downstream 73183 50771045 ~ 50771281 (+) True G1459764
TU1670067 lncRNA downstream 79897 50777759 ~ 50778334 (+) True G1459771
TU1670088 lncRNA downstream 112940 50810802 ~ 50811017 (+) True G1459792
XM_021570336.2 mRNA upstream 498 50658041 ~ 50664680 (+) True LOC110494982
XM_036948179.1 mRNA upstream 122012 50510419 ~ 50543166 (+) False LOC110494989
XM_036948180.1 mRNA upstream 122012 50510419 ~ 50543166 (+) False LOC110494989
XM_036948181.1 mRNA upstream 122012 50517387 ~ 50543166 (+) True LOC110494989
XM_021570323.2 mRNA upstream 165092 50488724 ~ 50500086 (+) False ldlrad2
XM_021568722.2 mRNA downstream 4300 50702162 ~ 50708829 (+) True kctd20
XM_036950039.1 mRNA downstream 31179 50729041 ~ 50748688 (+) False LOC110494040
XM_036950040.1 mRNA downstream 31179 50729041 ~ 50748688 (+) False LOC110494040
XM_036950041.1 mRNA downstream 31179 50729041 ~ 50748688 (+) False LOC110494040
XM_036950038.1 mRNA downstream 31180 50729042 ~ 50748688 (+) False LOC110494040
TU1669855 other upstream 229472 50430807 ~ 50435706 (+) False atxn7l2a
TU1669722 other upstream 481482 50181165 ~ 50183696 (+) True LOC110494957
TU1668956 other upstream 1225849 49439006 ~ 49439329 (+) True G1458807
TU1668189 other upstream 1624822 48933340 ~ 49040356 (+) True erc2
TU1668187 other upstream 1729841 48928347 ~ 48935337 (+) False erc2
TU1670065 other downstream 78667 50776529 ~ 50777072 (+) True G1459769
TU1670568 other downstream 197078 50894940 ~ 50897444 (+) True LOC110494047
TU1670644 other downstream 382270 51080132 ~ 51090889 (+) False G1460249
TU1674769 other downstream 3476152 54174014 ~ 54189617 (+) True G1464092
TU1674872 other downstream 3558519 54256381 ~ 54264616 (+) True LOC110494100

Expression Profile