RNA id: XR_005037001.1


Basic Information

Item Value
RNA id XR_005037001.1
length 1476
RNA type mRNA
GC content 0.45
exon number 3
gene id LOC118936400
representative True

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 50816422 ~ 50819052 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gatgttattttaatggacaaaaattgacatttttttttttttttttttttttttgaattttaccccttttttctccccaatttcgtagcaTAGATTAGAGCATAGATTAAGAAATTATACACTTTCTGGAGCACTAGTCATTGTCATGTCCCATCTCTTTGATCTGACAAAAATGTTCCCTTTATTCTTTTATGATACAGCATCTTTTCTTTGCCACTCTAACCTCTAAAGTCTGTTGGTCTCCTACCTTTTTGGGGGCACTTCCTTATCTAATCTGATGCACATGGCTTTTTATTCGGATAACTTGAAAATAAAGTGCTAGTATTGAACTCTTTTCCTACAGATACAGATATCCTACAAATATTAATCAAGAGCTTGATTGTCGCTGAGCCTACACACACTGTTGTGTGTTTGCATAAGAAGCCAATCAGATCCAACCATAACACCATCAGCCAACACTGAATCATCCACCTGTTCCAGAAGGGCCTGCGTCTCCATGACAACCTGTCCCGGTTGGGGGCCCTGGagtcatcagtgtgtgtgtgtaccccgtGTTCTTCTTGGACATGCGCACTGGGGCCGTGCGCTGGAGATTCCTCCTGCAGATCAGTGGGCTAACTTGGGTATCCTGATACAGGGTTTATAGTAGCACATACAGTtacctagcctgggtaccagtctgttttgctaacattccactccttgtactctgtgtcatacGCCAAAGATGTTTAGCATGACAGGAACTGCAAGGAGTGGAAAGATGGcaaaacagactggtacccaggctaaacATTATCAGGTATTTTAGAAATGATATGGTTACatggtaattacactgtaataacctATGAATTGATTATTTGGAATTGTCCTTTGCCCGTACTTTTCTTTTTCTGTAAGAAACTCAATATGTTATGAAAGGGACTAGTTGGTATCTAGAAACGTTAATAGCAACAAGATGCACCAACAGAACTGGAAAATGAGTGGTCGGTACTCACAGATTGGTTTGAAATCATATTGATGTGTTCTTCTACCTGGCCCTGCAGTGTCTGGAAGACCTCCACCATAGCCTCCAGGCCATGGGCACCAGGCTGTATGTGCTCCAGGGGCCCTACCAGGGGACAGTGATGCATCCGGTGGCCTAGTGGGGCACCACCCAGCTCAGCATGGACACTGAGATAGAGCCCCACAACACCCAGCTGGACCAGCAGCACTGCATCATGGCCAGAGAGCAGGGACTCAAAATACATGCCACCGTGGCACACACACTCTATTATGTCAAGAGGTGGGTCACAGTGGATATTGAAGGCTAACGGAAGGGATCACATCTGACATACAAGAAGTTTCTACACGTCCTGTCCAATCTGGGGGAGCCAGACAAACCTGCCAGAGAGATCACAGCTCAGGACTTCCAaggaccatgcctcaggactacctggcctgatgactccttgctgtccccagtccacctgg

Function

GO:

id name namespace
GO:0007165 signal transduction biological_process
GO:0009881 photoreceptor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1670093 lncRNA upstream 540 50815657 ~ 50815882 (+) True G1459797
TU1670091 lncRNA upstream 1384 50814713 ~ 50815038 (+) True G1459795
TU1670089 lncRNA upstream 3696 50812504 ~ 50812726 (+) True G1459793
TU1670088 lncRNA upstream 5405 50810802 ~ 50811017 (+) True G1459792
TU1670067 lncRNA upstream 38088 50777759 ~ 50778334 (+) True G1459771
TU1670116 lncRNA downstream 43616 50862668 ~ 50866685 (+) True G1459815
TU1670117 lncRNA downstream 47834 50866886 ~ 50867160 (+) True G1459816
TU1670560 lncRNA downstream 66495 50885547 ~ 50885768 (+) True G1460176
TU1670561 lncRNA downstream 67173 50886225 ~ 50886556 (+) True G1460177
TU1670574 lncRNA downstream 87691 50906743 ~ 50906946 (+) True G1460190
XM_021568726.2 mRNA upstream 57677 50753871 ~ 50758745 (+) True dram2b
XM_036950041.1 mRNA upstream 67734 50729041 ~ 50748688 (+) False LOC110494040
XM_036950045.1 mRNA downstream 6411 50825463 ~ 50829199 (+) True LOC110493204
XM_021568729.2 mRNA downstream 17963 50837015 ~ 50840404 (+) True LOC110494043
XM_021568727.2 mRNA downstream 33555 50852607 ~ 50861098 (+) False rbbp5
XM_021568728.2 mRNA downstream 33567 50852619 ~ 50861098 (+) True rbbp5
XM_021568732.2 mRNA downstream 75851 50894903 ~ 50897444 (+) False LOC110494047
TU1670065 other upstream 39350 50776529 ~ 50777072 (+) True G1459769
TU1669855 other upstream 380716 50430807 ~ 50435706 (+) False atxn7l2a
TU1669722 other upstream 632726 50181165 ~ 50183696 (+) True LOC110494957
TU1668956 other upstream 1377093 49439006 ~ 49439329 (+) True G1458807
TU1668189 other upstream 1776066 48933340 ~ 49040356 (+) True erc2
TU1670568 other downstream 75888 50894940 ~ 50897444 (+) True LOC110494047
TU1670644 other downstream 261080 51080132 ~ 51090889 (+) False G1460249
TU1674769 other downstream 3354962 54174014 ~ 54189617 (+) True G1464092
TU1674872 other downstream 3437329 54256381 ~ 54264616 (+) True LOC110494100
TU1674965 other downstream 3652653 54471705 ~ 54474472 (+) False LOC110494110

Expression Profile