RNA id: TU1670568


Basic Information

Item Value
RNA id TU1670568
length 1815
RNA type TUCP
GC content 0.44
exon number 3
gene id LOC110494047
representative True

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 50894903 ~ 50897444 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GACGTAATGTAAGCACAAAGAGAACTTGGAAGTGCTGTTTGAGAGGCCACAGCATCAAGCGAAACATTTTTTGGGGATAAAGAATGCTGATTGTTACGTTGGCCAGAGCCAACTTGGTGCGTTGATATTACTGCTTCTGACTTGAAGATTCCATTTACTGAAGGATTCGCCCTGGACTGGAGTGAGGCCCACATATCTTTTTcagttagctagccaacgttagttTACGGTACCTCTGCTTCACACTGCATTCCTGACgaaaaaaaacgtattatttTCTACGAGCTGAAGCTATTGAGAACAAGAGGCTTCCTGAGCGAACACCAACTCCATGATTTCAGAGATTGTCTTCAACAGTCATTATCAGAGCACTACCAGAACCACTGGTTCCCTGACAGACCACAGAAGGGCTCTGGCTACCGCTGCATCAGAATGAATCATGAAATGGACCCAATCATTGGCAGGGCTGCTGGTCGGATCGGACTTACTAGCGATCAGCTCTTTGCCCTCCTTCCCCGGGAGCTGACACTCTGGGTGGACCCTTTTGAGGTCTCTTACCGCATCGGGGAGGATGGCTCCATCTGTGTCCTCTATGAGGCAGAGTCCCTAGCGCCCGCAGCAGCCCCTAGCCCTGACCCCACACACAACTGCAAGAATCAGTTTCTGATCGGTGGCCGCACTAGCCCTCCGAAGAACTACCTGATGACTGTCTCGAGCTAGTGTGGTTCAGGCACTACTGCGACGCCAAACAGCATCGGTGTGAAGGCCATCGACCACCCACAGTGATCCTTTTTGTATTTTCATTTCATAGTGTTTCCCCCTATTAAATGAACTTGATTGCTTATTTAATTGAATTTGCGTATTCTAAAAGCACCTGGTATTTGTTAGAGCGTTGGGTAGCACTTTTGAATGTTTGACTACCGGCCCATAGGCTCTAATTGCACTGCTGAGACTCAGTATGTAGTGTGCATATGTCCTGTGGTATTAGCACACTACATGCAAGCATGGGCTTTGTTAAGTGTAAACACAACATCTGGGATTCTGATGCTAGTTTCTCATGGTGTAATAATACTTCACGCCACTTCCCACACATGTAAACTAAAACAATCGTATAACTGGAGTCAAGTATTTGTTCAGAAAcctatacatttacaaaaatgtggtTTTATAATTCAGTTCACTGCTGGTTTGTAATCTTACGGGACCACGTCACCTATCTGTGCCCTGAAATCAAAGACCCAAGACAAAATGTCTGACTTCCCAGTTGCAAAAAAAGCTGCCTCTAAAAAGGTGAGGTCTGCTGCCCAAACACCTTTGAGGAATACTGCCTAACTTTCATAGATCCTTTTTTCACAATAGTCAGTGTTCAGAAAATTGGAGTATGTCAATCTCTAATTTCACACCTCTTGCATCCCAGTAGACATAACATTAATCATTTAAAATGGCTTCTGCTGTCAACATGTTCAAAAAGGGGTTAGGATTTAAATATTTCACTATTGTGAATTTTGTTGTTGGGAAGTCTTCTGTTATCCCCCCCCAGGTAGAATAAGCTGTGAGGTGGTTGTTGGCGTCATTTTAACGTCTAGCACTGCCAGGTAGTGTGGTGCTCTCAGCCCTCTGTAGCATCCTCTTCTTCCTACCGAGCTGTTGAGCAGCTCACCATTGCTTACTGTTCtagacaggggaaggatatagTTTGTAAGCTATTTGAAGCACAGTAAGCATTTAAAGTAACTATTTTAAATGACTTTTGTGCATCTATAAATATTTGTACAGTTTGTCACAATTTTATTACAATAAACCTTTATGAATTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1670561 lncRNA upstream 8384 50886225 ~ 50886556 (+) True G1460177
TU1670560 lncRNA upstream 9172 50885547 ~ 50885768 (+) True G1460176
TU1670117 lncRNA upstream 27780 50866886 ~ 50867160 (+) True G1459816
TU1670116 lncRNA upstream 28255 50862668 ~ 50866685 (+) True G1459815
TU1670093 lncRNA upstream 79058 50815657 ~ 50815882 (+) True G1459797
TU1670574 lncRNA downstream 9299 50906743 ~ 50906946 (+) True G1460190
TU1670589 lncRNA downstream 30108 50927552 ~ 50928158 (+) True G1460205
TU1670587 lncRNA downstream 32594 50930038 ~ 50931328 (+) True G1460203
TU1670586 lncRNA downstream 33998 50931442 ~ 50933523 (+) True G1460202
TU1670585 lncRNA downstream 43314 50940758 ~ 50941260 (+) True G1460201
XM_021568727.2 mRNA upstream 33842 50852607 ~ 50861098 (+) False rbbp5
XM_021568728.2 mRNA upstream 33842 50852619 ~ 50861098 (+) True rbbp5
XM_021568729.2 mRNA upstream 54536 50837015 ~ 50840404 (+) True LOC110494043
XM_036950045.1 mRNA upstream 65741 50825463 ~ 50829199 (+) True LOC110493204
XR_005037000.1 mRNA upstream 75888 50816422 ~ 50819052 (+) False LOC118936400
XM_021568742.2 mRNA downstream 155238 51052682 ~ 51062761 (+) True apobec2a
XM_036947882.1 mRNA downstream 703989 51601433 ~ 51640269 (+) False csf1
XM_036947884.1 mRNA downstream 704000 51601444 ~ 51640269 (+) False csf1
XM_036947883.1 mRNA downstream 704020 51601464 ~ 51640269 (+) False csf1
NM_001124394.1 mRNA downstream 704086 51601530 ~ 51640412 (+) False csf1
TU1670065 other upstream 117868 50776529 ~ 50777072 (+) True G1459769
TU1669855 other upstream 459234 50430807 ~ 50435706 (+) False atxn7l2a
TU1669722 other upstream 711244 50181165 ~ 50183696 (+) True LOC110494957
TU1668956 other upstream 1455611 49439006 ~ 49439329 (+) True G1458807
TU1668189 other upstream 1854584 48933340 ~ 49040356 (+) True erc2
TU1670644 other downstream 182688 51080132 ~ 51090889 (+) False G1460249
TU1674769 other downstream 3276570 54174014 ~ 54189617 (+) True G1464092
TU1674872 other downstream 3358937 54256381 ~ 54264616 (+) True LOC110494100
TU1674965 other downstream 3574261 54471705 ~ 54474472 (+) False LOC110494110
TU1674964 other downstream 3574501 54471945 ~ 54473872 (+) True LOC110494110

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
eurasian perch (Perca fluviatilis) TU258712 True 1110 lncRNA 0.50 2 NC_053130.1 1393388 ~ 1408170 (+)
mexican tetra (Astyanax mexicanus) TU258712 False 1791 lncRNA 0.46 2 NC_035918.1 17584201 ~ 17586613 (-)