RNA id: TCONS_00046297


Basic Information

Item Value
RNA id TCONS_00046297
length 1454
RNA type nonsense_mediated_decay
GC content 0.45
exon number 14
gene id XLOC_023409
representative False

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 20643658 ~ 20658668 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATATCTTGTGTTTTAAGCTAGATCTTCTTTTTAATTAGAGTTTGAACCAATGCCTGTATAAAATAGGTTTGACCCTATTTTAAGGCCTATTTACACAATACATAGGAGGATAAATGGCAATGTTATCATAAATGAGAAGCCCACTCTGTGGAAAAAATGGGGGTGAAAGATCGCCCTCAGTGCTATTTTGACGTGGAAATCAACAGAGAACCAGTTGGACGAATTGTCTTTCAACTGTTCTCCGATATTTGTCCCAAGACAAGTAAAAATTTCCTTTGCCTGTGCACTGGCGAGAAAGGCAGTGGCAAAGCTACAGGGAAAAAATTATGCTATAAAGGTTCAACTTTCCATCGAGTTGTAAAGAACTTCATGATCCAGGGGGGTGATTTTACTGAGGgcAATGGAAGAGGGGGAGAATCTATATTTGGTGGTTTCTTTGAAGAGATTGTGGTCTTTTGCAAAATGAAAAGATGAGAACTTTACTCTCAAACATGACAGAGCCTTCCTCTTGTCGATGGCCAACCGTGGCAAAGACACAAATGGCTCCCAGTTCTTCATAACTACAAAGACAGCGCCTCACCTAGATGGAGTGCATGTGGTCTTCGGGCTGGTCATCTCTGGCTTTGAGGTCATAAAGAACATTGAGGGGCTGAAGACTGACTCAGCCAGCAGACCGTATGCTGATGTCAGAGTGATTGACTGTGGACAGCTGATTACAAAGTCTGCAAACGACGTTCTTCAAGGCAAACTGAGAAAAGCATTCTATTCTGAGGATGACTCTCAGAGTTCCTCTGAGTCTTTATCTGAGCATTCCTCACTAGAAGAAGAGCCTACATCTCGAAAGAGGAAAAAAAGCTCAAAGAGTAAACATGCAAAGAGAAGCAGAAGAGAGGCAAAGAAGGACAGAGAGACTGTTAAAACTGCAGGACCCGCAAGTCATGCTGAGGGCGAGATGGCAGAGGAAAATGATGGTGAagctgaacagaatgtgaaaagGGAGAAGCCTGTGGTCCGACCAGAAGAGATCCCACCTGTGCCAGAAAACCGTTTCCTGCTCCGCAGAGACATGCCTACCCAGGAGGAGGCAATAAAAATTGATGTACAGGACACAGACATTGTACCAAATGACACCAAACCAGCTGTCACAAAATCTGGACGCAAGATCAAAGGCCGCGGAACTATGAGATACCATACACCCCCTCGGTCAAAGTCCCGTTCAGAGTCAGAATGTGAACGGGGGAGCAGTGAGACTCCCCCACACTGGAAAGAGGAAATGCAGAGGACCAAGGCTTACCAGCCCCCCAGTGTGGAGAGATGGAGTAAAGAAGAAAGATGGGATGACAGAAGTGACACCCCAAGGTCCAGGTCAGAATCCAGAGAACATTCCTTGGGTGAGGCCTCTGTGTACTCAAGCCAACATagatctaaaaaagaaaaaaagaaagccaAACAAA

Function

GO:

id name namespace
GO:0000413 protein peptidyl-prolyl isomerization biological_process
GO:0006457 protein folding biological_process
GO:0005634 nucleus cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0005737 cytoplasm cellular_component
GO:0016853 isomerase activity molecular_function
GO:0003755 peptidyl-prolyl cis-trans isomerase activity molecular_function
GO:0016018 cyclosporin A binding molecular_function

KEGG:

id description
ko03110 Chaperones and folding catalysts

ZFIN:

id description
ZDB-GENE-030131-1725 Predicted to enable cyclosporin A binding activity and peptidyl-prolyl cis-trans isomerase activity. Predicted to be involved in protein folding and protein peptidyl-prolyl isomerization. Predicted to be active in cytoplasm and nucleus. Orthologous to human NKTR (natural killer cell triggering receptor).

Ensembl:

ensembl_id ENSDART00000127988

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00047175 lncRNA downstream 146174 20450027 ~ 20501301 (-) False XLOC_023407
TCONS_00046291 lncRNA downstream 146174 20470778 ~ 20501301 (-) False XLOC_023407
TCONS_00046288 lncRNA downstream 176484 20450615 ~ 20470991 (-) False XLOC_023407
TCONS_00046290 lncRNA downstream 178185 20450838 ~ 20469290 (-) False XLOC_023407
TCONS_00047174 lncRNA downstream 462450 20181997 ~ 20185025 (-) True XLOC_023400
TCONS_00046315 lncRNA upstream 478507 21137175 ~ 21139396 (-) False XLOC_023418
TCONS_00046319 lncRNA upstream 567865 21226533 ~ 21228953 (-) False XLOC_023420
TCONS_00047176 lncRNA upstream 567865 21226533 ~ 21231171 (-) False XLOC_023420
TCONS_00046320 lncRNA upstream 570201 21228869 ~ 21231171 (-) True XLOC_023420
TCONS_00046855 lncRNA upstream 672348 21331016 ~ 21369754 (-) False XLOC_023421
TCONS_00046295 mRNA downstream 6475 20591660 ~ 20641000 (-) True XLOC_023408
TCONS_00046294 mRNA downstream 47595 20589678 ~ 20599880 (-) False XLOC_023408
TCONS_00046293 mRNA downstream 47694 20589458 ~ 20599781 (-) False XLOC_023408
TCONS_00046287 mRNA downstream 115662 20450027 ~ 20531813 (-) False XLOC_023407
TCONS_00046289 mRNA downstream 116001 20450804 ~ 20531474 (-) False XLOC_023407
TCONS_00046301 mRNA upstream 49506 20708174 ~ 20808283 (-) True XLOC_023410
TCONS_00046302 mRNA upstream 234114 20892782 ~ 20908249 (-) False XLOC_023411
TCONS_00046304 mRNA upstream 234715 20893383 ~ 20908395 (-) False XLOC_023411
TCONS_00046303 mRNA upstream 234715 20893383 ~ 20908395 (-) True XLOC_023411
TCONS_00046305 mRNA upstream 251254 20909922 ~ 20915050 (-) True XLOC_023412
TCONS_00046286 other downstream 115889 20450027 ~ 20531586 (-) False XLOC_023407
TCONS_00046292 other downstream 176385 20470954 ~ 20471090 (-) True XLOC_023407
TCONS_00046277 other downstream 460045 20187316 ~ 20187430 (-) True XLOC_023401
TCONS_00046272 other downstream 593218 20032331 ~ 20054257 (-) False XLOC_023397
TCONS_00046273 other downstream 608325 20032340 ~ 20039150 (-) True XLOC_023397
TCONS_00046316 other upstream 480654 21139322 ~ 21144300 (-) True XLOC_023418
TCONS_00046357 other upstream 1304384 21963052 ~ 21963168 (-) True XLOC_023437
TCONS_00046358 other upstream 1305382 21964050 ~ 21968116 (-) False XLOC_023436
TCONS_00046365 other upstream 1412553 22071221 ~ 22097763 (-) True XLOC_023443
TCONS_00046371 other upstream 1650276 22308944 ~ 22309058 (-) True XLOC_023445

Expression Profile

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