RNA id: XM_021568742.2


Basic Information

Item Value
RNA id XM_021568742.2
length 1879
RNA type mRNA
GC content 0.47
exon number 4
gene id apobec2a
representative True

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 51052682 ~ 51062761 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tctctcaaccccactcctcatctctctctctttctctctgctaccccccttcctctatctctctggaactctcctgtcctctttccCCTATCTCTGCTTCAACCCCCAAACCCTTACCACCTCcccttctcacacacactcaactGCACAcctcacaatcacacacacctcacacacaggaCTACCATTCCCGGACCAGTCACCATGGCCGACAAGAAGGGCGCTGCTGCCAGCAGCAAACTGTTggtgaggaagaaagagaggacgACAAAGACAGCGGTGACTGTGGAGGTCAAGAAAGAGGTCAAGAAAGAGGTGAAGACGGAGATGAAGATGGAGATGAAGAGGGAGGTGAAGAGGGAGGTTAAGTCGAGTTTagtgaagaaggaggagaaggtccTGGCAGTGGGGGAGAACGTGGAGGGGAACGGAGATGTCCCAATGGAAGAGGGAGCCACAGCTAACGAAGACGTGGCTAATGGGGAAGCGGCTGCGGCTAAAGCTAACGGAGAAAATGGGGAGTACGAACCCATTGAGCTGCCCCCTTGGGAGATCATCGAAGGGGACCGCATCGACCCGTTCCAATTCAAGTTCCAGTTCAAGAACGTGGAGTACTCGTCAGGTCGTAACAAGACGTTCCTGTGTTACctggtggacaaagggaaggcTGATGCCGGTCTGATGAGAGGTTACCTGGAGGATGAACACTCAGGAGCCCACGCTGAGCAGGCCTTCTTCCTCCAGACACTCCCAGACTACGACCCTGCTGTCAAATACACTATCACCTGGTACATGTCATCCAGTCCCTGTGCGGTCTGTGCAGCTAAGATCGCAGAGGCCCTTCAGGCCAGGAAGAGCATCAAGATGACTCTCTTCTCAGCCCGGCTCTTTGAGTGGGAGGATCAAGACATCCAGGCGGGGCTGAATGCTCTGTCTCAAGCAGGGTGCAAGCTGAGGATGATGAAACCCATGGACTTCACCTATGTCTGGGACACTTTTGTGGAGAATGACGACCTAACGTTCACCCCCTGGGAGGACTGCCAGGACAACTACGAGTACTACCACGAGAAACTGGCAGACATCATGCAGTGACTACAGAATGTTGTCAGCCCAGAATTATCCCATCACCTGCCACCTCCACTATCtaaggtcctcagtgatgtgcacaGGACTCAACCAATCAGAGGGCAGTTTGTGTGCTTGTGCGTCAAGCCGTCCTGCTGTGTTTGTTTGCCTTTATGAAGCCAGTTCCAGACCACCTCCTCCACATGGaactctctgtcccagcttcCACTCGCTATTCTGGGGTTGTCCTCACAGGACACATGGATCTGTGGATCAATCCTCAACCTCAAGATAACAGCTTTGCAATTATGTACTATTGGTTATAATTCAAGTATAAAAAGTTATTTTATTACAATTTAAGTTATAATAATAATTCATCCTTCTCCTTCTGTCCTGAAAGGACGTTTCATAACTGCACCAATGTTACCTCTGTCATCCAGAGGACTAGAATGATATTCTATGCATGAATATTCATATAGATATTGTTCATGACAATACCCCAAACTGTTAAGTTCTAGAGAATTAAGTTTGTTATTGTTATTAGGAGTAATTCAACATTTGTGAGTTATGAGATACGTTCAATATCTTTTACACATTTTAatgaggcaaaaaaaaaaacatgaatgttACTTGGTGTTCGTTTTAAATAGTGATTGAATGATCCAACATTTCTTACAGAAAGACTGAATAGAGATTGTAGCGTGAGCATGAGCACACGATTTCAACTTCAAGATTATATCGATCTGCCTGTAGAAATTTAAGCAAAGTACATTATTTATACACAGTGAAAATAAAGAAGTGTGGAGTTTTAAAA

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0043697 cell dedifferentiation biological_process
GO:0070654 sensory epithelium regeneration biological_process
GO:0060538 skeletal muscle organ development biological_process
GO:0016814 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K18772 APOBEC2; C->U-editing enzyme APOBEC2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1670642 lncRNA upstream 8494 51026320 ~ 51044188 (+) True G1460247
TU1670622 lncRNA upstream 62176 50989907 ~ 50990506 (+) True G1460228
TU1670612 lncRNA upstream 79831 50972538 ~ 50972851 (+) True G1460219
TU1670607 lncRNA upstream 91581 50960791 ~ 50961101 (+) True G1460214
TU1670608 lncRNA upstream 92244 50960116 ~ 50960438 (+) True G1460215
TU1670646 lncRNA downstream 17371 51080132 ~ 51137770 (+) True G1460249
TU1670732 lncRNA downstream 150701 51213462 ~ 51215222 (+) False G1460330
TU1670734 lncRNA downstream 150701 51213462 ~ 51215222 (+) False G1460330
TU1670735 lncRNA downstream 150701 51213462 ~ 51214669 (+) False G1460330
TU1670738 lncRNA downstream 150701 51213462 ~ 51214669 (+) False G1460330
XM_021568732.2 mRNA upstream 155238 50894903 ~ 50897444 (+) False LOC110494047
XM_021568727.2 mRNA upstream 191584 50852607 ~ 50861098 (+) False rbbp5
XM_021568728.2 mRNA upstream 191584 50852619 ~ 50861098 (+) True rbbp5
XM_021568729.2 mRNA upstream 212278 50837015 ~ 50840404 (+) True LOC110494043
XM_036950045.1 mRNA upstream 223483 50825463 ~ 50829199 (+) True LOC110493204
XM_036947882.1 mRNA downstream 538672 51601433 ~ 51640269 (+) False csf1
XM_036947884.1 mRNA downstream 538683 51601444 ~ 51640269 (+) False csf1
XM_036947883.1 mRNA downstream 538703 51601464 ~ 51640269 (+) False csf1
NM_001124394.1 mRNA downstream 538769 51601530 ~ 51640412 (+) False csf1
XM_036950089.1 mRNA downstream 904278 51967039 ~ 52121978 (+) False LOC110494059
TU1670568 other upstream 155238 50894940 ~ 50897444 (+) True LOC110494047
TU1670065 other upstream 275610 50776529 ~ 50777072 (+) True G1459769
TU1669855 other upstream 616976 50430807 ~ 50435706 (+) False atxn7l2a
TU1669722 other upstream 868986 50181165 ~ 50183696 (+) True LOC110494957
TU1668956 other upstream 1613353 49439006 ~ 49439329 (+) True G1458807
TU1670644 other downstream 17371 51080132 ~ 51090889 (+) False G1460249
TU1674769 other downstream 3111253 54174014 ~ 54189617 (+) True G1464092
TU1674872 other downstream 3193620 54256381 ~ 54264616 (+) True LOC110494100
TU1674965 other downstream 3408944 54471705 ~ 54474472 (+) False LOC110494110
TU1674964 other downstream 3409184 54471945 ~ 54473872 (+) True LOC110494110

Expression Profile