RNA id: XM_036947884.1


Basic Information

Item Value
RNA id XM_036947884.1
length 2633
RNA type mRNA
GC content 0.48
exon number 11
gene id csf1
representative False

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 51601433 ~ 51640412 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtcactcacacacaccaccacccacaCTCGCTCAGTCAGTCATTGAAGACAGAGATGGCTAAGCAAAGTTGACCATTGGACCCTAGACTTCTTGTCAGCcagatgaacacacacaaaccagcCCACAAAGCCAAGGCTAGGCATCTGTGCTTCCTCTTCCTCATGTGCTTCCCTTTGGCGTGGGGTGGCGTCCCTGGTCCATGTCGGCACTCTGTGACCAAGGGTCACCTCCTCAACCTCAACTGCCTGATTGATAATCAGTTGGAGAATGGCTGGTCAATAACCTACGTATTCACTGAGCGCCAGAGTTTGAGTGACGTCTGTTACATCAAAGCAGCATTTCCACAAATCCTGGAGCTTCTGAACACACACTTCAAGTATGTCAGGAAATCGGACAACGGGCGCTATGTCAAACTCCTGAAAAAGGTCATATATGACCTCTACTCCCAAAACTGCATACCTGAAATTAATGAGGAGATTGAGGACACCCCATTGAAGTTTGTCAGAATGCACAGCACCTCACCCAGAGAGGCTCTGACGAAAGCCCGGGGGGTCATTGAGATGTACATGACCCTGATGACCAAGAGCAACGGGCCCGTCGACTGGAACTGTGAGGAAGAGTATGCAGAGGATTACCAAGAATCCACCACTGCCCTCCCCACCCCCACCGCAGCTGAACCTGAACGCCAGTGTACGTGTCCGACAGTGGGTCCGGTAACCCCTGATGTCTCCCTGGTGTCCCACAGCGTATGGAGCAGTCCCCCACAGCCCACCCTCTCCCAACTCACCTCGATTGTGCCTCCCAGGCTGACTCATCCATCCCTGGGTACCAAGGGCGCTGAGCCCCGGGTGTTCCTGGTGAGTTCTGGTACCGTAAGACCCCCCTTCCCCAGGGAGCTGCAGCGGACTGTCCCCGATGGACGTTCACttggagggggcagagagggggaTATACACTGGGACTTTCGTCCACCTTCACCCAATGGAACTGAGTCAGATTCGGGACTCTACCAGGCAGTTGCTGACACCCCGTCTGCCACGAATGAACCTTCCCCGTCTTCCCCTCCTAGTCTGGTTCTTCTGGGGACCGTTGGCTCCCATGACGAGACATTTTACTACCCCCAGACTGAGAGGATAAGGGAGACTTCCACAGCCCGACCAGCAGGGAGAGGAGCAGCAGGCTCACCCCACAGTCACTTCGCTGTTGCTGGGGCCAAGCTGGTCACACCAGTCCCTTTCCTTTACAAGTTGATTGGCATCACCCCCAGTAGTGATGAGAGCACTGCCTATGTGTTGGCCAAGAGGTCGCTGGATGCCAGGAATTATGGAATACTTCAGGATTGGGTTTCAACAGAGACCCCTCATCTAGACGACACTAGAGAAAAATACCCAGGCACAGAGAGATATTTACATGACTGGAACCCTCCGATTGAAAGCACTACGACCGAAGCATCTCTACGTTTGAAGATGACAGTGGAGGAGCCAGACAAACTACACACCACTACAGAGGCACACGACCAAGTCACGAAGACTGAGCCAAACCATCCTAGGACATCCAATAAGGAAGTATTCAGCACAGATATCCTGTCAGAGAGGACAGCTGCAGACGATGCTCCTATTTCAGAAAGGTCCAGTGAAGGCTCAGTGAAGGAATTCCGACACGGGAAAACTGGTCATTCCGATTTAAGCATCTCCTACCAGACAGCCTTTATCATTGCAGCAGTGTGCAGCGGACCAATCCTGATCATTACCCTATTCTGTCTCAGTGAGAAGAAGaGACTCCAAGCCCTTATCCACAGTACCAGCATAATTGAAAACCAGAGGGCATGCAGCAGCATTGAGGACATTGAGCTACAATATTGTAAAGCCAAGGATTGAGAGAGCTGgattgGTTTAACCTGGCAGTAAGAGATAAACAACCACGTAATTCATCAAACAAGAGAAGACATGGAAATTTGGCAACTATTTAACTCTTGTGAAAGTTTTCcatttttgtatataaatatataaaaaatgtctAAAGGTACCTATTTTTATACAAATTAAGTTTATATTGCTTGAAAGATTTAACAGAGAATCATATGCTCTCCAAAATTACACAATATCTGCATGCTTCCCTTTTGCTGTCAAAAAGGTTTGAGTGAATTTATCTGTTACACACAGCGTTAACTTGACTCTCAAAGACTGTTTGGACAGTTTCatgcccaccacacacacagctttgATCTTCCATGAAATAGAATGGACCAAACAATCCTCCAAGTTTTGACCTAGTAGCCATCAGCGCAACAGTGCAAGTCAACATTAAACTAAAGGAAGTCTTTCCATGTGACTGAAAGAGTCTCATGACATTGTTCAATGGAGTTGGGCCCATGAGCCAAAGCAATACAAGGTGTCATCACCCCAAGAGGACAGAGGATGTATTTTTGGAGATCAATAGATTAAATACAAACAGATTAAATACAAACAGAACAcccatagttatttgttttgagtGTACTCCCTACATGCCATGCAGCATACTATATTCATTTGACTTCTGATATTCTCTTGTTTTATCCCTACCAAATGAAGAAGAGGATTTCAATCTGTCTCTCATGCCATGATGCCAATGAAATTGTGTTATAAAACGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1671440 lncRNA upstream 25392 51575770 ~ 51576052 (+) True G1460997
TU1671424 lncRNA upstream 33012 51568216 ~ 51568432 (+) True G1460981
TU1671223 lncRNA upstream 70790 51423155 ~ 51530654 (+) True G1460787
TU1671237 lncRNA upstream 163234 51437390 ~ 51438210 (+) True G1460798
TU1670883 lncRNA upstream 212353 51388825 ~ 51389091 (+) True G1460469
TU1671479 lncRNA downstream 21787 51662056 ~ 51664073 (+) True G1461036
TU1671503 lncRNA downstream 64122 51704391 ~ 51707336 (+) True G1461060
TU1671606 lncRNA downstream 234099 51874368 ~ 51876383 (+) True G1461150
TU1671610 lncRNA downstream 243968 51884237 ~ 51887958 (+) False G1461152
TU1671611 lncRNA downstream 243968 51884237 ~ 51888844 (+) True G1461152
XM_021568742.2 mRNA upstream 538683 51052682 ~ 51062761 (+) True apobec2a
XM_021568732.2 mRNA upstream 704000 50894903 ~ 50897444 (+) False LOC110494047
XM_021568727.2 mRNA upstream 740346 50852607 ~ 50861098 (+) False rbbp5
XM_021568728.2 mRNA upstream 740346 50852619 ~ 50861098 (+) True rbbp5
XM_021568729.2 mRNA upstream 761040 50837015 ~ 50840404 (+) True LOC110494043
XM_036950089.1 mRNA downstream 326770 51967039 ~ 52121978 (+) False LOC110494059
XM_036950103.1 mRNA downstream 326771 51967040 ~ 52104247 (+) False LOC110494059
XM_036950086.1 mRNA downstream 326771 51967040 ~ 52121978 (+) False LOC110494059
XM_036950087.1 mRNA downstream 326771 51967040 ~ 52121978 (+) False LOC110494059
XM_036950088.1 mRNA downstream 326771 51967040 ~ 52121978 (+) False LOC110494059
TU1670644 other upstream 510555 51080132 ~ 51090889 (+) False G1460249
TU1670568 other upstream 704000 50894940 ~ 50897444 (+) True LOC110494047
TU1670065 other upstream 824372 50776529 ~ 50777072 (+) True G1459769
TU1669855 other upstream 1165738 50430807 ~ 50435706 (+) False atxn7l2a
TU1669722 other upstream 1417748 50181165 ~ 50183696 (+) True LOC110494957
TU1674769 other downstream 2533745 54174014 ~ 54189617 (+) True G1464092
TU1674872 other downstream 2616112 54256381 ~ 54264616 (+) True LOC110494100
TU1674965 other downstream 2831436 54471705 ~ 54474472 (+) False LOC110494110
TU1674964 other downstream 2831676 54471945 ~ 54473872 (+) True LOC110494110
TU1676946 other downstream 4356379 55996648 ~ 55998174 (+) False G1466124

Expression Profile