RNA id: XM_036950103.1


Basic Information

Item Value
RNA id XM_036950103.1
length 4856
RNA type mRNA
GC content 0.52
exon number 32
gene id LOC110494059
representative False

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 51967039 ~ 52121978 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TACCCGGGGTGCGCGCCTTGCACTCCTCCCGATAGCAGCGTGCTCCAGTCGAAGATGCGATTGAGGCTTAacggatagggagagaggaggaacagcgAGAGAGACTGAATAAGAAacggggagagcgagagaggtaggagagaatCCATGAGAGACCTGTACCGCATTACACGAAAGGAgagagcacagacacacactctctcatacACAGCATACGCTACTGCAGAGCTGACACACATCgcggagagaaggagaagaaacagCGATATCTCTACTGTCACGGCACAGgTCAGAGACGTATCAGGAATTGCGACtaaagaggagaaacagaggggaGAGATGTTGGCGCAGGGCGGGCCTTGGGCCCTGTCTGTCATATCACTGGTCCTGCTGCTGTGGCAAGAAGTGTCTGCTATCGATGTTCCTCTCGATTCAAAGATCCAGCAGGACCtgAAGCAGCCTCCCACCATTATGAAACAGTCGTTGAAGGACTACATTGTTGATCCCAGAGATAACATCATCATTGAGTGTGAGGCCAAGGGGAACCCCGTGCCAACGTTCTCATGGCGACGGAACGGGAAGTTCTTCAACGTGGGCAAGGATCCGCGGGTGACGATGCGGAAGCGCTCAGGAACGCTGGAAATCAGCTTCCGGAGCGGAGGGAGGCCAGAGGACTACGAGGGGGAATACCAGTGTTTTGCCTCCAACGACTTTGGAACGGCGCTGACCAACAAGATCCTACTACGAGTGTCCAagTCTCCTCTGTGGCCTAAGGAGGTGTTGGAGCCAGTGGTAGTGGGTGAGGGATCTCCCCTGGTCCTGGCCTGTAACCCTCCTCCTGGTCTGCCCCCTCCGCTCACCTTCTGGATGGACAGCGccatGATGCCTATAACCCAGGACAAGCGTGTGTCCATGGGTCTGAATGGAGACCTGTATTTCTCTAATGTGCTGGCTAAAGACTCCCACAGAGACTACAGCTGCAACGCCCGATTCCTCTTCACACACACTATCCAGCAGAAGAACCCCTTCACACTCAAAGTGCAGACCAaggaGCCGTATAATGACACTTCCTCTGTCAACTCCACTGACCCGTACGGTGGTCGTAAGGTAGCAGAGACCACCCCTAACTTCCTCTCCCCCACGGGGACTGACAGCTCGAGgatggtgatgagaggagaaaagctAAAGCTGGAATGTATCGCTTCCGGAGTtccAACTCCCAGTATAAAGTGGTTTAAGAAGGGGGGAGACCTGAACCAGAAGGTGAAACTAGACAACTTCAATAAGACTCTGCGTATCGACAGTGTGTCAGAGGAGGATGCAGGGGAGTACATGTGTATGGCCAACAATCAGATAGGAAGCATCCGACACTCCATCTACGTCCAGGTTAAAGCGGCTCCCTATTGGCTGGACCAGCCGTCCAATCTGGTGCTAGCGCCGGATGAGAACGGTCGTCTGGTGTGTCGGGCCAATGGAAACCCCAAACCTCACATCCAGTGGCTGGTCAACGGAGAGCCGATCGAGAGCAATAgcTCCTTGCCCAACCCTAGCAGAACGGTGGCAGGTGACACCATCATGTTCCGCTCCGTTCAGATCGGCAGCAGCGCTGTGTACCAGTGTAAtgcatccaatgaccatggttacTTGCTGGCCAACGCATTCATTAGCATACTGGacatGGCCCCCAGAATGCTGGGTCCTAAGAACCAGCTGATAAAGGTGATAGAGAACAACAGAACCTTCCTGGACTGTCCCTATTTTGGCTCGCCACTTCCTGAGCTACGCTGGTTTAAGAATGGTCAAGGAAGTGGTCTGGACGGTGGTCACTATCGGGTCTACATCAACGGGACCCTAGAGATCAAGCGTGCACGGGCTGAGGACCAGGGGACCTACACCTGCGTGGCCAGCAACATCCTGGGCAAGGAGGAGAACCAGGTCCGCCTGGAGGTCAAAGAGCCGACACGTATTGTCAGGGCTCCAGAGCACCAGTCAGCCATCAGAGGCACCATGGCTCGTTTCGACTGCCGGGTCAAATCAGACCTCACCCTGCCCATCACTGTTACCTGGCTGAAGGATGACAAGCCTCTCTCCCTGGGATCGAGGTTGAAGAAGGATGAGGATTCTCTGTCCATCCCCAATGTCcatgagggagatgagggaacATACACCTGCACTGTTAAAACAGAGATTGACCAAGACACTGCCTCGGCACGCCTTACTGTgttagAGGacgcctccctgtctccctcacaGTCTAGTGTCTTGCCTACAGACCGTCCTGACTCTCCCATGGACCTGGAGCTGTCTGACCCTGAAGAACGCAACGTACGACTCACCTGGATACCTGGAGATGATCACAACAGCCCCGTCACATTGTTCGTGGTTCAGTTTGAGGAGGACCGTTGGGAGTCAGGCAAGTGGCAGAACCTGTCTAGTTATCCCGGAGACTTCAACTCTGTCATCCTGGAGCTCTCTCCTTTTGTCAACTACCAGTTCAGAGTCATCGCTGTCAATTCTGTGGGCCAGAGCCGCCCCAGCCTCCCCTCGCAACGATACCAGACCAGCGGAGCCCCTCCAGATACTATCCCTAGAGGCCTGAAAGGCTGGGGCACCAAGAAGAACAACATGGAGATCAGCTGGgagCCCTTGTTGGACACAGAGCGAAACGGACCTAACCTGCACTACTCGGTGTGGTGGCGACGGAAGGATACgggggaggaatggagtaatgtGACTACAGTGGGTGCAAAGCACATTGTCCACGACACAGAGACCTACGTACCCTATGAGATCAAACTGCAGGCTGTGAATGACTTTGGACTGGGAGGCGAGTCCAACATCATCATAGGATACTCTGGGGAGGACAAGCCCACAGCCCCTCCCACTGACCTGCGAGTGTCTAAGATTGACAGCACCAAGGTCAATGTCCACTGGACCCCAGTAGATCCCAGCACTGTATTGGGAGAGTTCAAGGAGTACAGGGTGTACTACTGGCGTGAGGGCAGCATGGTGAAGGGTCTGCGTGTGAATAAAGAGAAGAAGACTAAAGGGTTCTACAGTACCGTGGCCCAGCCTACTGGCATACTGACAGACCTACAGCCATACAGCCACTACCGCATATACATGGTGGTCGCCAACAATCGCTACGAGGGACCGCCTAGCAACCATGTGGAGTTCCGTACCAAGGAAggagTGCCAGAAGCTCCTAAGTTCTTTAAGATCATCCAGCGGAGTACAGATGTTATCCACCTGGAGTGGGACAAACCCCTGGAGCCTAACGGCATTCTGATTGGATATAAACTCAACTACCAGACAGtGAACGGGTCGCGTGTAGGCCTTATGCAGATGCAGAGTTTCCTACCTAACGTGACAACGTATACACTCCGCCTGCCCGAACGAGCCATCCGCTATAAGTTCTACCTGGCGGCCCTCACACAGGTGGGAGCAGGGGAGGTCTATGCTGAGGAGTCTCCACACTTCACCAATGAGGAAGACTTTTTCAGCTCAGTCGAGCCTACAGATGTGTCCGTGTCTACAActttccctccacctcctcccactactaccgctgctactacaACCATTAGTACCTCAACTACTACtccccctaccactactaccactactaccactactactactactactactactaccactactgctgcgACTACTGCTACCACTCCTGTGCTGGTTACCAGCACCAAGCAAGCACATACGAATGTGTTGGTAGGCATGGCTCCTGGGAGTGTGATCTGGAACCTGACGGTGGAGCCTAACAGTAACTACGCTAACGTCAGCTGGAACCACAACTTCCCGGCCGGCAGCAGCGAGTTCCAGCTAGAGTTCACACTGGACAGCAACGGCAGTATGTCAAGCGTACCTGTGAACCAGCCGCCCATTAAACTGGCGGGACTGATCGAAGGGGCCAAGTACCACCTGAGGGTGTACTCCAACGAATACCACAGCATCTCCAGCAATGTTGTCACCTTTGAGACCAGTGCAGCCTACAGTAAAGACCAGGTGGACATTGCTACCCAGGGCTGGTTCATCGGGCTGATGTGTGCAATTGCTctcatcatcctcatcctcctcatcgtCTGCTTCATCAAGAGGAGTCGCGGAGGCAAATACCCAGTGCGAGAGAAAAAAGATCTCCCTCTGGATGCAGTGGATCAGAAAGGAGAGGACGGATCATTTGACTACCAGTCCCACTGATCTGTCTCCACTCATTTTTCTCTGTGGGGAatgagtctctctctgtccacctttACTGATTAATTAACCCTCTAACTTAACCGTCAAGTCAGCTTACTCACTCTAATCATCCTGATCCTACTTTATTGAAATGGTGCTAAAACCCATGTCCTAAGTTACACAGACAGGTAGAGGGTATGTACACACTTAAATGTGTGGCTACTGTTTGTCACCTAAATCCATAACTAAAGTACATACAGAAGCATCCATACACAGCCTGTCTGGTGTGTATTGTTGTGGTGGTAACACACAAAACCTTTGGCCTTTGGTTTCCAAGGTAGCAATGACCTTTGACCTCTCACATGACCAAAGCTAGTTCCTGAGTGGAGATACCTTCTCAGGTGACCCTCATCCACTGTTGCCATGGTGATGGTCATATCACCGCTGACAGTGTCTTAAGAACTTCAGTAGGAGAGGAAGTGCCCCTGTACTCAACACCCAGTAACACCACACAATCTGTAACCCAAACCCCTAACTGTTCTTATGAGTCTGAAATGGAACATGGCACCTTAATTTACCCAAGCTTTGGGGGCACCTTCTACCTAGACCAGTTACAATGGTTCATTTAGTCAGGTATATTCAGAGTAATTTGAAGAGAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1671611 lncRNA upstream 78196 51884237 ~ 51888844 (+) True G1461152
TU1671610 lncRNA upstream 79082 51884237 ~ 51887958 (+) False G1461152
TU1671606 lncRNA upstream 90657 51874368 ~ 51876383 (+) True G1461150
TU1671503 lncRNA upstream 259704 51704391 ~ 51707336 (+) True G1461060
TU1671479 lncRNA upstream 302967 51662056 ~ 51664073 (+) True G1461036
TU1671760 lncRNA downstream 4968 52109215 ~ 52109575 (+) True G1461292
TU1671635 lncRNA downstream 7476 52111723 ~ 52113123 (+) True G1461175
TU1671768 lncRNA downstream 22568 52126815 ~ 52127051 (+) True G1461299
TU1671771 lncRNA downstream 26346 52130593 ~ 52130810 (+) True G1461302
TU1671801 lncRNA downstream 72492 52176739 ~ 52176958 (+) True G1461331
NM_001124394.1 mRNA upstream 326628 51601530 ~ 51640412 (+) False csf1
XM_036947882.1 mRNA upstream 326771 51601433 ~ 51640269 (+) False csf1
XM_036947884.1 mRNA upstream 326771 51601444 ~ 51640269 (+) False csf1
XM_036947883.1 mRNA upstream 326771 51601464 ~ 51640269 (+) False csf1
XM_021568742.2 mRNA upstream 904279 51052682 ~ 51062761 (+) True apobec2a
XM_036950110.1 mRNA downstream 86352 52190599 ~ 52273991 (+) False LOC110494060
XM_036950112.1 mRNA downstream 143544 52247791 ~ 52273991 (+) True LOC110494060
XM_021568754.2 mRNA downstream 170007 52274254 ~ 52280244 (+) True LOC110494061
XM_021568755.2 mRNA downstream 186979 52291226 ~ 52298261 (+) True LOC110494062
XM_021568759.2 mRNA downstream 237810 52342057 ~ 52363993 (+) False zc3h11a
TU1670644 other upstream 876151 51080132 ~ 51090889 (+) False G1460249
TU1670568 other upstream 1069596 50894940 ~ 50897444 (+) True LOC110494047
TU1670065 other upstream 1189968 50776529 ~ 50777072 (+) True G1459769
TU1669855 other upstream 1531334 50430807 ~ 50435706 (+) False atxn7l2a
TU1669722 other upstream 1783344 50181165 ~ 50183696 (+) True LOC110494957
TU1674769 other downstream 2069767 54174014 ~ 54189617 (+) True G1464092
TU1674872 other downstream 2152134 54256381 ~ 54264616 (+) True LOC110494100
TU1674965 other downstream 2367458 54471705 ~ 54474472 (+) False LOC110494110
TU1674964 other downstream 2367698 54471945 ~ 54473872 (+) True LOC110494110
TU1676946 other downstream 3892401 55996648 ~ 55998174 (+) False G1466124

Expression Profile