RNA id: TCONS_00046303


Basic Information

Item Value
RNA id TCONS_00046303
length 3862
RNA type mRNA
GC content 0.44
exon number 17
gene id XLOC_023411
representative True

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 20892782 ~ 20908395 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CGCAAACCCACCACCCTCAAACTAGATTAGTTTtcggcccttcataagaaaaagtttgggtacCTCTGATCTATGGTTCTGCGTCAACGCTATGAAACACTCCGCGGCTGTAGGTGGCAGCATTTCATTGTGGCTCTTCCTCCCGCACAGGAAGAAAAATGAGCGGGAgaatttgtgttgttgttgtgggCCAGATACAGTGACGGACTCTATGCAACATATTAAGTTATTTCGTGAGATATTagcatttaaatacttaatttccTCAGATATTTTGAGCATAAAGCTATAATAAATGTAATGGTCGTACATCAGCATCGAGACTGTTGTTTAAACAAAGAAGAGTACAATGTTATCTACTAATGGCAGTCAGCTAACAGTCATGTTTAGAAGGAGGCGAAAAAACGGATTATTTACGGGTTTATAAGCTTTACAGGCGGACATATATACCTTTTATCCAGGGCTGGACTTCACCACAATGTCGCAGgTCAAAGCGAAAAAGAAACTGCATTATTACCAAGGACATGAAATAGCCACGTCTGATTACAAGGTGAACGAGGTCCTTAGCCTGCGTGACATTGACAAGCTTTTTGATGAAATTGATGCTGACTCTGATTTGGGTTTGCCTCTGCTTTCACCCTTGCCCAAAAACACTGTAAATGGTGAAAAGAAAAGTGAAAGTTCATCTAGTTCAGAAATGCAGAATGCATCATCTAAACAGGTTGTAGTGGAACACAAAGAAGCTTTGATCCAAGAAAACAGCATTGAAGAGGATGAACAAATGGATAAAGAAGAGAGTCCATTTAAAGGAATCGCTCCCATAAAGACTTCCAGCCCTATTGTTTTGGAAACTGAAAGGGATAAAACGATGAATGGAGTGAGGCCTGTGGCTGATCCACTTCTATTTGGAGTTGAGGATGAGGAACCCATTGGTGGAGACATAAGTGAGGCGTCCTGCACACAACAGTCAGAAGCAGTGAAGGAATCACTCAATATGGATAGTGGGTCTCTGGCATCACCACCGGAAAAGCTTGAGTTTAGGAAAACTACTAAACCAAATGCTGACGCATTATCAAGcaTGAAGACAGCAGAAAACAATAGAGCACCAGTGCAAGCAACCCAGTCTTCATCTCCAGAATTGATGGATGAAGATCCAAATCAGATTTCTCCTGTTTTGCTTGAGGAGTGTGAAGATAAACTTGAGGCTGAGCAATGCCAGAACCAGGTGGCAGAGGATTCAGTCAGAGGACTGTCTTTCCAACACAAGCTTAAAAAGGCTTTGATGCCTAAATCCCCATGTTCCAGGAAACAAGCAGCCGTTTCAGCAGCTCCTCCACCTGCAGATTTAGAGGAGGACTTCATGATCCTGGATGATGAGGCTCCTGTACTTTTTATCATTCCTCGGAAGGCAGATGGCAGCAAAAATAAAAGACCTGTCCCAGCAGACATTATGAAGGAGAACTTGCTTACTGAGCCACTTTCAGCAGATCAGCTCTCACAGAGTGAAGCTCATCCTGCCAGTCGGCATGGGGCGgatgctaaaaaaaaacaagtgcaaGTTGAGTCTGCTAAACAAAAACTGAAAGGAAAACGTGGAAAGGCTTCAAAAAAGGCTGCCAAAGACTCCGTGTCTGATGTCGCTGTAGAAGATGGAGCAGATACTGTAACTGAAACACTGGAGGAAAGGGTCTGTGATCAAGCATCAACTCAAAATGTACAGCAACACAAAGCAGTGCCAGCAGGAATGAGACGTAGAAATAGCAAGCCACCTGAGCCTGCTGAACTTACtaaaaaaaatggtcaaactgaaACCGGTGGCAGCAAAGAAATCCCAGTTGCGGAGTCTAGAACTACAAAGAAATCCACACAATCATCTAACCAGGGGAGACAAAGGTCAAAAGCAAAGAAGGAATCCAATAAAGTCAATGTTGTAGCAGATCTACACACTGCTAACTCAGTGAAATCTAGTAAAAATCGCAAGAACAGCAAAAAGGAGGACAGTGTCtctaagacaaagaaacaaagtTCTAAACAACAAATAGTGTTGGTGCATCCTTCCTGTGAGGAGCAAGAGCATGAACCTTCACCTGCCATCAGCGAGCAAGAGGAAGAACAAAGAACAGTTCTGAATAAACAATCTCCAGTCAAAAAGCAGaagagaaaagaaacaaaaacagtggAACCGAAACCAAAGGATCCACCACCAATTTTATCAGACATCTCTTCAGACAGTCCTTTGTGTGTAAAGAGGAAGAGAAATCCTCCAGGACAATGGTGGCTCACCAGCCCAAATGAAAGTACCACAGATCTTCAGCCAAAGCATGTGACGTGTACAACACAAAGGCCAAAAGCCagcacaaaaacagcaacaaacaaaacaCCTGCTGTTGATTCAGATGAAACACCGTCTTTCAGGCCTGTCCAGGAgaacaaaaagaaacagaagcgtTGCAATGTGTCGGACAGTACTGAAAAGGTAATAGCAGGTGCCAATGGACGCGATGTTGGAGCTGAGAAAAAGACACCCAAGAAAAAAGGTGGTCAGAGGAAACAAAAACCAACAGCCGCTCCACTGACAACCTCAAGTCAGGAAGTGGGATCTGGTCTGAATGACAATGCTCTGGAAAATAGTCCAGAATGGTGTAGTCCTCGCAGGCAACACAGCGTTCTAGCAGgTGAGAAGAGAGTGTTTGACTCTGTCTACTCGCGAGACACTGGATCTGCAAAGAAACGGCTTTCATCTTCTTTTAGAATGCCGGAGGTTTCTGAACCAGACAATAATCCACAGAAAAGACAAAGAAAAGCTCCTTCCAATTGGTGGGAGACACCACAGTCTCAAGAAACAGCCAATGAGCTTCCACCACCATGCAGTCCCCCTCCACAAAAGTCCCAACACAGTCCAAACAAAATATCAAACATTCCTAAAAAGAAAGGAAATTCAgcaaaatcacaaaaaacaaaGAATCATGCCAAGAACATAAAACGAAAGATCGTCAACACACCAAAATCAATCAAACGCTCTTTAGCCTCAATGAATGCCATTTTTGCTTCtgctaaaaataaaagcatggtCAAAAGTGGACAAAGGCACAGAAAGCTCGGTCGCAGAAACCTCCTTCACTCTCTTGAGGACCAGTCGGATCACTCGAGTGAGACTATGGCCCACACTGATGATCAGATGCAGGGAATGAGCCACATGTCCTTGGGCTTCACCAGTGGTGTTACTGTGCAGCCATCAGCAACCACAAATAAAACCAGTGTCCGGGTTTCCAGTGGTTGTAACAGATTATCTGATGTTGACATTGATTTCAGAAGTGGGCCATCTTCAATGGTTGAGCTTCAGCAACACGatgaggaggatgatgatgatgATTTGCCTTCATCTAGAATGACTCATGTGCGACAGACTGCACGGGTGTTGGCACGCTGTGATGTCTGTGGCCCTCCATTGCAGCCTGTTGTGCTAGAAGATGAGGATTGGAACAACCTCCATGCGTGGTTTGCTCACCTGTGGCCCCCAGCTTCTAAAAATGGACAAGTTATTAGTCCTGATGACTTCCACTGGCACTCCCATGGAGGCAGAGCGATGGGTCACATGGTTGATCTCCAAAGCCGATCATTCTCACACGGAAAGATTCTGCTGGGGTCTTTCATGAAGAAACCTCCACAGGTGGACCTTGATACGGTTTCGGTGTTCAGCGTTATCTCAAGTTGTGTGCGTGTTGAGATTGAAGGTGTAAAATCAGTCTTCAATTCTGGACAGGTGTTTATGATACCCTCTGgacAAATGTATTGCATCCACAACCTCTGTCAGGAACCAGCAGTGCTGATTTACCACAGGACACAGTCTGATGATACATAG

Function

GO:

id name namespace
GO:0051455 monopolar spindle attachment to meiosis I kinetochore biological_process
GO:0051315 attachment of mitotic spindle microtubules to kinetochore biological_process
GO:0051382 kinetochore assembly biological_process
GO:0000776 kinetochore cellular_component
GO:0000778 condensed nuclear chromosome kinetochore cellular_component
GO:0019237 centromeric DNA binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-091118-108 Predicted to enable centromeric DNA binding activity. Predicted to be involved in attachment of mitotic spindle microtubules to kinetochore; kinetochore assembly; and monopolar spindle attachment to meiosis I kinetochore. Predicted to be located in kinetochore and nucleus. Human ortholog(s) of this gene implicated in CREST syndrome and liver cirrhosis. Orthologous to human CENPC (centromere protein C).

Ensembl:

ensembl_id ENSDART00000169168

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00047175 lncRNA downstream 392082 20450027 ~ 20501301 (-) False XLOC_023407
TCONS_00046291 lncRNA downstream 392082 20470778 ~ 20501301 (-) False XLOC_023407
TCONS_00046288 lncRNA downstream 422392 20450615 ~ 20470991 (-) False XLOC_023407
TCONS_00046290 lncRNA downstream 424093 20450838 ~ 20469290 (-) False XLOC_023407
TCONS_00047174 lncRNA downstream 708358 20181997 ~ 20185025 (-) True XLOC_023400
TCONS_00046315 lncRNA upstream 228780 21137175 ~ 21139396 (-) False XLOC_023418
TCONS_00046319 lncRNA upstream 318138 21226533 ~ 21228953 (-) False XLOC_023420
TCONS_00047176 lncRNA upstream 318138 21226533 ~ 21231171 (-) False XLOC_023420
TCONS_00046320 lncRNA upstream 320474 21228869 ~ 21231171 (-) True XLOC_023420
TCONS_00046855 lncRNA upstream 422621 21331016 ~ 21369754 (-) False XLOC_023421
TCONS_00046301 mRNA downstream 85100 20708174 ~ 20808283 (-) True XLOC_023410
TCONS_00046296 mRNA downstream 234937 20643658 ~ 20658446 (-) False XLOC_023409
TCONS_00046305 mRNA upstream 1527 20909922 ~ 20915050 (-) True XLOC_023412
TCONS_00046306 mRNA upstream 7733 20916128 ~ 20952672 (-) True XLOC_023413
TCONS_00046307 mRNA upstream 14149 20922544 ~ 20926812 (-) True XLOC_023414
TCONS_00046308 mRNA upstream 32965 20941360 ~ 20956781 (-) True XLOC_023415
TCONS_00046309 mRNA upstream 150384 21058779 ~ 21090584 (-) False XLOC_023416
TCONS_00046297 other downstream 234715 20647475 ~ 20658668 (-) False XLOC_023409
TCONS_00046286 other downstream 361797 20450027 ~ 20531586 (-) False XLOC_023407
TCONS_00046292 other downstream 422293 20470954 ~ 20471090 (-) True XLOC_023407
TCONS_00046277 other downstream 705953 20187316 ~ 20187430 (-) True XLOC_023401
TCONS_00046273 other downstream 854233 20032340 ~ 20039150 (-) True XLOC_023397
TCONS_00046316 other upstream 230927 21139322 ~ 21144300 (-) True XLOC_023418
TCONS_00046357 other upstream 1054657 21963052 ~ 21963168 (-) True XLOC_023437
TCONS_00046358 other upstream 1055655 21964050 ~ 21968116 (-) False XLOC_023436
TCONS_00046365 other upstream 1162826 22071221 ~ 22097763 (-) True XLOC_023443
TCONS_00046371 other upstream 1400549 22308944 ~ 22309058 (-) True XLOC_023445

Expression Profile

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