RNA id: XM_036950112.1


Basic Information

Item Value
RNA id XM_036950112.1
length 8246
RNA type mRNA
GC content 0.47
exon number 22
gene id LOC110494060
representative True

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 52190599 ~ 52273991 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGTCATGCAATGCTGATTTTCAGATTAGGTGGGTGGCTTGCCAGCATttccagctgagagagagaaaacgagacaggaaaggagaggaggGCACTGATAAGCCTTTTCTCCTTCCTCCTGGTGTGGTTCTGATCCGGTTCAGTTCTGATCTGAGCGCGAGAATGGTGCGTTGGAGCGTGAGAATGATTCTGTTGAGCCTCCGCTCATTAGCTCTGAGCTACGCTGTcggtgGGGACGTGTGCATAACGGGTCATGACAGTGGGCCAGTGTTTGAGGAGCAGCCCAGCAGTGTGGTTTACCCAGAAGGTCTCAGTAAGGGAACAGTTACTCTCAACTGCCAGGCTAGAGCCAGCCCTGCTGCTACGTACAGGTGGCATGTGAATGGTACGAATGTCCCGGTAGGGGACCTCCGGTATACACTGGTAGCCGGTAACCTGGTGATCAGTGGTCCCCAGTACGGCAGTGACGGAGGCTCCTACCAGTGTCTGGCCATGAACCGCTGTGGCACCGTACTCAGCCGCGTCGCCAATCTCAAGTTCGGCTACCTCCATGACTTCTCTGGGGAAGGGCAGAGCCCGCAGACAGTGTACGAGGGTGCAGGTGCCTTCCTGGCCTGTCAGGCCCCCGCCCACtacccagCGCTGTCCTACCGCTGGTTCGTTAACGACTTCCCCAGCTTCGTGAAGCCTGACGGGGGTAGGTGGTTCGTCTCCCAGGTAACGGGCAACCTGTACCTGGCCAAGGCGGAGCCTAACGATACAGCAAGCTACTTTTGCTTCACCACCATCGACATGGACATCAGTACCAAGAGTACCTTCAGCAAGGCCAACCAACTCACCGTGCAGCCAGACgCCAATACCAGGAAGTCAGCTCCTGCTATCAAAGTGCGTTTTCCAGCAGAGACTTACGCCCTGGCAGGACACACCACCCAGCTGGAGTGCTTTGCCTATGGAAATCCCATCCCAAAGTTGCGTTGGAGGAAGGTGGATGGTCTGTTGCCGTCTAAGGCCGGGGCCAGTGCAGAGGGACCCATCCTCACTCTGCCTGAGATGACCTTCCATGACGAGGGCGTGTACGAGTGTGAGGCCTACAACTCTGAGGGCCGCGACAAACACCAGGGACGCATCAACGTGCAAGCCCAGCCAGAGTGGCTGCAGGTGATGAGTGACTCTGAGGTGGAGATCAGTTCAGAACTGCACTGGACCTGTGTGGCTGCTGGCAAACCAAGACCCTCCATACGCTGGTTACGTAATGGACAGCCCCTTAGCACacagGACCGAGTGGAGGTCAATGGGGGTCGTCTGAAGGTCATCAACCTGGCACTGGAGGATTCTGGGATGTATCAGTGTGTGGCTGAAAACAAACACGACACCATCTACTCCAATGCCGAACTGAGGGTGCAAGTCCAGGCCCCAGACTTCCGCTCCAACCCGGTGAGGAGGTTGGTCCCAGCAGCCCGAGGGGGGCAGGTGATGTTGGAGTGTCGGCCGCGAGCCGCCCCAAAACCTACCCTGTTCTGGAGCCGTGGCACTGAGCTCCTCACCAACAGCAGCAGGGTGACAGTGACTCCAGATGGGATCCTGTGGATCCACAACATCAGCAGGGCAGATGAGGGGAAGTACACCTGCTTTGCTGAGAACTACTTGGGCAAGGCCAACAGCACTGGACACCTGTCAGTTAGAGATGCCACTAAGATCACCCTAGCTCCCTCCAACGCTGACATCAACCAGGAAGAGAACGTCACGCTGCAGTGTCACGCGTCACATGACCCCACCATGGACCTCACCTTCACCTGGGCTCATAACGGAGCTCTGCTGGACCTGGAGGACCCCGCCGGACCATACCACCGTGTGGAGGGGAAGGAGACCATAGGGGATCTGTTGATAGTGAGTGGTCAGCTGAGTCAGGCCGGTACATACAGCTGTACAGCTCAGACCGTGGTGGACAGCGCCTCAGCCTCCGCTAAACTGGTAGTCAGAGGCCCCCCGGGACCTCCTGGTGGTTTAGTGGTGAAGAACGTTGCTGAGACGTCGGCGGAGCTGCGGTGGAGTCGTGGCTATGACAACCACAGCCCCATCGGGAAGTATGTCATCATGGGTTGCTCCCCACTGTCATCCGGATGGAGGACGATGAGGACAGAACCATCTAACATTGAAGGCAATGCTGAATCGGCTCGTGTGGTTGGCCTGTTGCCCTGGATGGACTATGAGTTCCAGGTCATCGCCAGTAACATCCTGGGTAGTGGAGAGCCTAGCATGTCCTCTCACACCGTACGCACCCAGCAAGCAGCTCCCACAGTGGCCCCTAGTGGActaggtggaggaggaggagaccgcAACGAACTCATCATCACCTGGACCCCCATGGCCAGAGAGTACCAGAATGGAGATGGCTTTGGCTACATCCTGGCATTCCGGAAGCGGAACACTCCGACATGGGTGGTGGAGCGTGTTTCCAACGTGGAGTCGTCTCGCTATGTGTACTCAAACCAGAGCCTGTCCCCCTACTGCCCATTTGAGGTGAAGATCAAAGCCTACAACCGTAAAGGAGAGGGTCCCTTCAGCCAGATTGCCCTGGTGCACTCTGCAGAGGAGGAGCCCACGGTGGCGCCCTCGAGGATCAACGCCACAGCTCTGACGGCGTTTGAGATGCAGGTGTCATGGGACCCGGTCCAACACCTCAGCGCCAATGGCATCCTCAGAGGTTACGAGATCCGGTACTGGCGTCAGCATGAGCGGGAGGCAGCTGCAGACCGTGTGCGTACAGCCGGGTTGGAGACAACGGCTCGCGTGGCAGGACTGAGACCCAGCACCCGGTACCATGTTACCGTGCTGGCCTACAACAGCGCTGGCACAGGACCAGCCTCACCCAAATCTACTGTCACTACCAGGAGACCACCTCCTAATCGCCCCCCTGGCAACGTGTTCTGGAAGACTGATGGCTCATGGGTAACTGTGAGGTGGGATCATGTCAAGGCCCTCGGCAACGAATCAGCTGTGCTGGGCTACAAGgTGTTGTATAAGCATGAGGGCCAGTCTGCACTGAAGGTTCTGGACAAGGGGAAGACGTCCGTCACCCTGCCCCTACCCAAAGACAACGGCTATGTGGTCCTGGAGATACGCTcctggggggagggaggagacggagccGCACACGAGACCATTGTTTCCCGCGACTCagGAACTGGAATGATGGTGCAGAACCAAGCAAGATCCCCATGGTCCAATCAtgctcccctccttctcaccgccacactctccctcactcttatTGGCTTACTGGACCTGTGATCTCCGCCAGTCCCTGGACATTGTGTCATAGTCATGGTGTAAAGCCTATTGTTCAGATTCACCTATCTATTGTTTTGTTGTggcggggaggggaggggattTTGAACAGGTGGACAAGGGGTGTGTGGGGTAATATTTTGAAGCAAGGGGGATGGGGGGAATTAAAATGATGGTTATTttattcttctttttataagaacatcaaactgggacattttttaagtgtgtgtgtccatgggtTTTAAGGGAGGGGTCAGACTACCTGATTGTCAATTACATTGGTGTCATTAGAACCATGCCTTATGGGGATACGAGAGGCTTTTGTCCTCCTTCACAGCAGCAGGGCAATTCGTCACACTCGCCATGTCTCCTGGCTTCCCCTACTCTGCTATGAACTCTAAGCTCGATAGGGTATGTCAGTCGTGCTTTCTGAAGTCGGTTCAGTTTCGTGTAGtttaaaaaatggaaaaaatGGTTTTCGGttttaatgttgttgttttttacaataaatgcactatgcataatttgggttgaatgctgtaataacacagacattttttttttaaagccccaTGATGGTAGTGGCGACCCAATACTGCGTACCACTTATTAACCATTCACATTACTTTATTAATAAAATATGTCTGTTGTGTAtgtatacatttgttttatttgataacTTCGgactagattcaatcagatcaagcagtAACTGGCACTAGCAGACACCCATGCGGGTGGATGTTTTGGAGGTGTCAGAGGTGAAACTGTACTGCagtcaaatcggtgagcagctgctctggCATCATCATGAAGCTACACCCGCCCCATTTGCGTTAGAAGTTCCGAATAAGAAAGTGTAGGCTATGTAGAAATAATTACACTGAAATTGTAAAATCATTCAACTTAAATAATAAGGATTTCCATCAGACTAAtcaaggtgtagattacatctcacattctaGTGTTCAAATTTGTAATCAAGGCTGCATGTGATTTCTCTTATTGCGACTCATTGCAGCCAATGGTAATGTccactttaggtataatgccgggAGCTGCTTggggatttgacagctctaacacagttcTACCTACTACACGGTCAAAACATCAGTTTTGCGGATGTTGGCTAAAGCAGATCTGATTgggccctttaaaaaaaaaaaaaaatccaagtcATTGTCTCATCTCTGCTCATGCAGTTGCAGCCAGCCAGCCTACTATCTCTGTGCTCCCCAATGAGTCATCCTATATATTATCTggctctatagagctgctgcctacattgTCTGAcgaaatcactattttagtagttcttccaAGTAAATAAaccatacttttatgactgctgaataccaactatcaaacACTTGTATTGTCGGGTAGATATACCTCGCGAAGAAACAactgctctctctatccctctcttctctccctctcagtatCTGCTCCACAAACTTGACCGGATATATGGTCATTatagttaattaccacattttctGCAGTAAACTATATAGAATATTGGGCTGTTGAAAACTACatctccctactacatcacagtTTGCGCTTGATCTGATTTCTTTGTAGAGAAACAGTGCATTGAGCTTACAGTAAAAACATAAAAATACatggaattcaagtaattgaaccgaCATTGGTCAGTTAGTTAATTAAAAAACTAAAAATAACATTTTGGTCAATCGCTTAGCACTATATGTCACCCAACTTAACTTCTGTATGTAGAACATCATGTGTACATACAGAACAGTAGACATCTCTGGTTCACTCAGACACTGACCAACTCTTTGTCTCTTGAATAAGATGAAGGGGAGATTAAACAGTGACCTCATTCATACATCTCATGGTTCTTCAGGAAGTCTACTTCAAATGGAACTCCCTGTGAATGGACGCTTGCTTACTTTCTTATGACACAACTTTTTGTCTCGTCCTAGGATTTTCTGCCtgtgtgttggtttgtttgttttatGTGATGTAGTTATGGCGGTGACAGCGTCTGAATGAATAACTTCACTCGTCCAAATGAATGTTTACCTTTATGTTTATGTTGGGAACTCAACTTGATAAAGATATTTATCAGTTCTTTGTTTACACTTTGTTTTGTGCCTGCATTGTTTAGAAGATTCAGACACAAATGGAAAACAATTTCAATTCAGTGTTTTTGGGTTGGTTATGAAACCCATCTATGTTGAAGTATAAGAGGAGTATTTCGCAATGGCAATTGTTGCGATAAAACGATGAAAGCAGGTACTGAAGACGGATCACAAAGTACAGTGTTATCGTTCACCTCTTACATAACATGTCCTGTTGTTCATTAACTGTTAATCATGCAACACTTCTGCCATAAACACTGCCTGTCTGAGGAGAGTTCACTGCAAGGATATGTCATCTATGGAACATACCGCGTCTGCTAGTTAATCATGAAGCCCCAGAGGGATTGATTTGGGTGGAAAGCAAGAATAATACCCACACACTGTTTAGATGTTCCCAATGTTACAATACTAACATGTCAACCACTGTCCTTGTCAAGCCTATTGCCACTGTATATTAAAACCATGGCAGCATTTGAACAGTGGATATTCTTTTTCCATATTTCATACCACCTTGCACCTGTAAAGTCTGTGGAATGTGTGTTCTGTATAATACCTTGAACTATTGATTTTGGGCATAGTCAAGTAGTTCAATGGTAAACAGCCATTTCAACACAGTGTGTCTGTTCTGAATATAACCACTGGTAGATGAAGCTTAGGCAACAGGAAACAAAATGGCAACTACTGTATGTTGTCTcttgttttttcattttttttcatttctgTTGCTCTGAAACATTCCTAGGCAGGTTGGCCAGTGGCAGCACAGTTCTGCTGCTACATGTTGTTCTATGCAGTAGAACAGTGCAAGGTATCAAGAAGTTTTGCGGCACTTCAGGGTTTGTGGGTCCTCATAAATTGTAATTGTTAGCTCATGATTTCGATACATCTCCGGAGTGTAGGAATCAAACAATACTTTTTATGGTTTGCAAGCGGTCTGGAGAAGCCAAAATCATAGTGTTTTGTCATTTGTAAAAGTCTGGGAGGTGAAAAAGGTTTGTTGAGTAAGTGGTTGGATGATGGTTTTTCTGGTGTTGTTTGGTTGTTAGCTACATCTCCCTTTGTTGTGCCCACAACTGTATAGAAGTTATTATGATGTTACTGACTCTCTTACACAGACATCGATTGATTGTCGACATCAGAATGAGCAAGATACAAACACACTCTGGCCATGAAACATGTTGATGACAATCTGTTAGTACAGCAGCAACACCAGTacaatcttagaaaaaaagggttccgtAAGGGTTCTTCCCATGTCCCCGtaggataacccttttgggttccaagtagaaccctggaaccaaaagggttctcccaGGAATCAAAAatagttcttcaaagggttctcatatggggacattcgaataacccttttaggttccagagAGCATTTTTTGTCAACGTGTATACCCAGAGTGCCCCAGTAGTGACAGTAGTGTTGCTTTTATAATACATAGACATATTCAGCACCACACTAGTCCCCACCTGACAGTTGTTATGTTTAGACCAATGATGTTGTTTTGATTTTAGTGGGTGAAGCCACTTAACCCTGTGCCTGACGGTGTTCAGGGTAATTTTATATTGGATTGGGAGTGttgtgttttataaactgtttttgtacgTGGCTCAATGTACCTTAAAAGAAAGAGGGCAGCTTAAAAACACGTGAAATATCCAGATGTCTTGCAGTGATGACTTCCTTGGGGGGAAACTCAAACCCACACTTCGTAGTTGAAGACAGTGGAGGTGTGATTGGTACTACCGGCTGGCTATACGAAACTGCAGGACAAGGGAGTCAACTTGACTCTCTTTCAACCTGCCTGTCAAACTGTAGTCAAACGTTGATGGTGATATGATATCTCATTCTCCTCCATGTGGCAGCAACTGCAGGGTCTAACAGATGGCCGGTAATGCTGTAAGCCACTGGATCACCCAGCTCGGAGATCACTATACACTATATCTCATCTAGCTGTTCAATACTGTTCAAGATAAACTGATAGAGCCGCCAACTGGGAAAGCAGCCTATGTTCTCTCAAGAGCAGGATAGGAGTTATTGTAGTAAAGAAATACATAAACACTGGATCTCACTCATCATCGGTCTGTAGATACTGTGCGGTGCTGTACTGCTAGAGTACAGCTGTTAGCGCACACTTAGCTCACATACTCAGAAAACAATTGCTTACTCTCTGGTGGCTAGTGTTGTTCCTTCTTCACCCAGCACCTGTATAGGCTTGAAAGACTCACAAGTACACGTGATCTGCCCTTGCTTGGTTTCTAACCCAATGGCAAATATTGGAAACACTGCCTTTTTGGTTATGTACTTAATGCTAGCTTATTTGCGTAATGCTAGCTCatttgcgtatgtgtgtgtgtgaatgtttttgTTAACACAACGCTTTTTATATGCAAAGTTCCCATCGGCAAAATACACATTAAAAGTAATTATCATCTTACAGCATCTCTGTAATACTAAGGTGACATCTTTTCAAACCCCTGTTCTCTGAATATTATGTGTCATTTTCAAGAAGTCTGATTGATCGGTTCAAATCACACTTCCTGGTGAAAGCTACAATGGCTATTGAGGTAGAGCTTGcccttaaccacagatctaggaatCATAACCTGAACAATAAAGGGATGAAAACAAATATGTCCCTGTATCAGTGGTTAAGGGCAACCAGTTTGCTAGGATGTGTTTGTCTGTCAGCTGGCTGGGCTGAAATGTTGAAATGTTCTGATACCATTGGGTCCTTCTAAATCTGTGATTAAACGGGAAAGTGAAGGGGAGGTATGGCACTTGTAAATATTACTCAATAAACACCTTGGGATTGTATTTAAATCA

Function

GO: NA

KEGG:

id description
K06760 CNTN2; contactin 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1671801 lncRNA upstream 70833 52176739 ~ 52176958 (+) True G1461331
TU1671771 lncRNA upstream 116981 52130593 ~ 52130810 (+) True G1461302
TU1671768 lncRNA upstream 120740 52126815 ~ 52127051 (+) True G1461299
TU1671635 lncRNA upstream 134668 52111723 ~ 52113123 (+) True G1461175
TU1671760 lncRNA upstream 138216 52109215 ~ 52109575 (+) True G1461292
TU1671921 lncRNA downstream 131350 52405341 ~ 52405572 (+) True G1461440
TU1672467 lncRNA downstream 141121 52415112 ~ 52415333 (+) True G1461938
TU1672481 lncRNA downstream 148177 52422168 ~ 52423010 (+) True G1461948
TU1672559 lncRNA downstream 229184 52503175 ~ 52503874 (+) True G1462021
TU1672699 lncRNA downstream 431332 52705323 ~ 52705583 (+) True G1462159
XM_036950107.1 mRNA upstream 125813 51967046 ~ 52121978 (+) False LOC110494059
XM_021568754.2 mRNA downstream 263 52274254 ~ 52280244 (+) True LOC110494061
XM_021568755.2 mRNA downstream 17235 52291226 ~ 52298261 (+) True LOC110494062
XM_021568759.2 mRNA downstream 68066 52342057 ~ 52363993 (+) False zc3h11a
XM_021568756.2 mRNA downstream 68067 52342058 ~ 52363993 (+) False zc3h11a
XM_021568757.2 mRNA downstream 68067 52342058 ~ 52363993 (+) False zc3h11a
TU1670644 other upstream 1156902 51080132 ~ 51090889 (+) False G1460249
TU1670568 other upstream 1350347 50894940 ~ 50897444 (+) True LOC110494047
TU1670065 other upstream 1470719 50776529 ~ 50777072 (+) True G1459769
TU1669855 other upstream 1812085 50430807 ~ 50435706 (+) False atxn7l2a
TU1669722 other upstream 2064095 50181165 ~ 50183696 (+) True LOC110494957
TU1674769 other downstream 1900023 54174014 ~ 54189617 (+) True G1464092
TU1674872 other downstream 1982390 54256381 ~ 54264616 (+) True LOC110494100
TU1674965 other downstream 2197714 54471705 ~ 54474472 (+) False LOC110494110
TU1674964 other downstream 2197954 54471945 ~ 54473872 (+) True LOC110494110
TU1676946 other downstream 3722657 55996648 ~ 55998174 (+) False G1466124

Expression Profile