RNA id: XM_036950113.1


Basic Information

Item Value
RNA id XM_036950113.1
length 4732
RNA type mRNA
GC content 0.50
exon number 19
gene id zc3h11a
representative True

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 52342057 ~ 52363993 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AATCATTGTTTTGTCTTGATGTCATTGTATTACTATTTAAGAGTAGATCGTTACTTGGAAGCGAGGTGTAAAACGTccgagttagctagctaatgttagcaacaACGAGTTAGCTCGAGCCTCGTCGCTATCAACTAGGCCACAGAGTTTGGCTAGGCCAAGAAGTATAATATTAGTTGCTAGCATCGAGGCCTTGTAACCAGAGTCTATACATAGCTGTAACTACCACGTATGAAGATGAAACTCGCATTCGCCCAGTAATTCTGGACCTTTGTTGCCACGGAGACACCCTATCAGAAGTGTGTGAGGAAAGGAGGAATCTTCTTAGCCACTACAGCCTAGGGAGAGTCCTGTTGGCCCCGAAGAGAACATCCCGGACGTGAATCCAGTCCACCATCCTGAACATGACTAACCATGGAGATGACTGCTATTTCTTTTACTACTCCAACTGCGCTAAGGGTGACAGTTGCCCCTTCAGACACTGTGAAGCCGCAATGGGCAGTGAGGTCGTTTGCAGCCTGTGGCAGGAGAGCCGCTGTTTCCGACAGGTCTGCAAGTTCCGCCACATGGAGATCAAGAAAAACAGGAAGGAGATTGCTTGTTACTGGGAGAACCAGCCTGCTGGCTGCCAGAAGCCGCACTGTGCCTTCCACCACGAGAAACCACGCTTAATAGACGGCCAATACGTACCGCCCAACAAAAGTTCGGTcctgaaagaagaggaggagcctCATGAGGATTCTTTGCCTCCTGTACCCATCCCCAGCCCAGCCAATCCCCAGCTCCGTGGGGTCATTAAGGCTGAGACTCAGGAGAATGTTCCCAGCCCCACTCACCCGCCTGTGGTTATTAACCCGGCAGATGACGAAGATGAGGATGAAGATGatCAGTTGTCAGAGGGGGAGGACAGCAGGTCTGGCTCAGACGGATCCAGAGTGGTCTCTCCCAGGAAGATGGCCGTGGGCTCCACCTCAGATGATTCACTGGACTTTGGTGTCAGAACCTTGGAGGAGATCAGACTGAGGAAAGCGCTGAAAGCCAGTATGAGGAGAGCTGGTTATCCAGTTCCTGGCCAGGGCTCAGATCAGCGGAACAATGGTGCCAGCGGAGAGAAGGAGAACATGAGATCCTTCATCCGGCCATCTCTCTTTACAGCCAAGGATGACACTGTGGTCTTTGGTGAAGAGACCGTGAGACGCAATGTTGCAGACAGGCTTGGGAAGAGAATAATAGTCAAAGAAGTTCCTGCCGGGGGTGACCTGCCAATGAAACGCTGTCTGGCCGAGCGCCTCGGGAGGAAAATGGACGAGGGTGAAATGGACCTGCCGCCTCAGAAAGCTCTGAAACCTGTCAGGGATAGATTGGGATTACCTGTTGAACCCACTTCTGCCTCTGAATCAGCTGAGAACAACAGTGAGAATACAGCACCGGAAATAATCCGCATCAAAACCCTGGAGGAAATCAGGGGGGAGAAGTTGGCTAAGTCCCAAGGACAAGCTCTGGGGGACCACCCTCTCCCTTCAACTCCTGATACCACCAGTACCAGCAAGGCCCCAAAGAGAGGCACCACTGGCAAACCTGCAGTCAGCCTCCACGTGAAGACCTTCTCAGAGATCCTCCACGCCAAGAGAAAGCTGGAGCAGGACCAGCAGCAAGGACCCAGCCTCAGAAAGGCCATGCAGGAGGCTATGGAAGCATCTCCAGGGAACTCCCAGGCCCAGGGACCCACTGAGCCAGCCATGCCCAGCCGGGGCGCACCTCCTGGAGGTGGAGTTAAGGTAAAGACCCTGGAGGAGATCCGCAGGGAGAAGGCAGCCAAGATGCAGGCCAGGGGACAGGAGGCGTCCAACAGAAAAATCCCAGGCTCAGCCTCTGGAGAGGGAGGCACCAAGAAGCCCCTGGGACTGCGCATCAACAAAGCAGCTTCTTCTGCTGCCAGCACTACCACCCAGAAGACATCTGAGGTGACCGAGAAGAGGGAGTCTTCTGTTGCTACTGAGGCGAGCCCTGCTAACGGTAGGAGTGATGCTGTGTCTGGTGACAGTGTGAAGGTGAAGACCTTTGAGGAGATCATGCGTGAGAAGAGGCTCCGCAGGCAACAGCTGCAGGAAGAGCAGGCCTCGTCCCCCAGCCAACCAGAGGGCTCTGCCGAGGCAGACTCTTTCCCAAAACAGGCCACAGGCCCCGCCCACCAGCGGgagaagagggtgtgtgtgagcacCCCTGccgcctcctctcccccctcaatCACCCTGGAGGCACATGCCCAGGCACCCAAAGCCCCCGTTCGCCAGCGCATCACCCTCAAACCCAAGGTTGCCTCTCCTTTGCCCTGCGCCACCTCCCCCAACCAGGGGTCTCCACTGAGGCAGGCAGAGGCAGACTCCCCCTCACTCAGCCCCAGGAATTCCAGCACTGCCCCAGGCAAGAGGAAGAGAGGCTCCCCAGGCGGTGCCAGTCCCCCAAAGCAGGCTGCCGCAGCAGCGGCCTCCCCTGGGCCCTCTGTGAAAGGTTCTCCGGTTGAGAAGGCTCAGGATGGAGCCCAGAAGAAGTCCCCAGGGCAAGCTACTGAAGCTAAAGTGAGGCCCAAGCTGAACGTGAGGCCTTCTGTTATGAAGCTGGCTGCCCAGGTGAAACCAGGCCAGAAGAGAACATCCGCTAGATCTGCTGTCGCTGCAGTCAAACCCCTCAATAGCACCTATGCAGTGCAGGAGGAGCCACTGCAGGAACTTCCCTGCAAACGGAGAGAGGTGTCCTCTACTTCCTCCAGTGTGAAGGTGCAGATAAGCCCTGTGGTCTCCAGGAGACCCCCCACCATCCCTGGCCTCAGCTCCAGCCCCCTGAGAGAGGAGTTCCAGGCAGTCCCTGTCAACCAACACAGCCCAGCCATCACCACAGCAGCCCCAGAGACCTGCATAGTCCCACAGAGctctgtgGTGAATACACCCATCCAGCCCAAGCCCCGGCGGCCCAGCGTTGCGATGTCTCGCTCGGCCGCAACAGCCCCTTCCACTAGCTCCTCAACCTCCGCCATGGATGAATTCGACGAGTTGATGAACGAGTTCACAGATGACCGTCTGGACGATGACTTGGAGCTGGATCCAGGCAAGGGAGAGGATGACTACCTGCTGGAGCTGTCTGAGATGATTGACAGCTAGACTGGCCTACCTGATACCCCCTACGTGACCCTTGACCAACGCCTATGTTAATGTCACCTGATACCCTGTTCACGACCCCTGACCGACCTTTGACCTACAGTAACTCCTACATTCATCAACACCAATATAATTTCAAATGATCACCAGAACTAAACACCAGTTGAACGTCAACCTATTACCAGCGCAACTGGCTGGGTATCACCTATCACTGCCATAGAGGGTTGATTTGACATGTCTTCATTGATTTGGGGAGGATATATGTATTTGTTACTGATTCCCAACCACTGTCTATCAGCCCATGTCATCGGAGTAGACTAAGGTTGCTACAATATGTCAGAGGGGACTGGTGGgcttattttatttttcttcaaTTAAAACACATTGTATTTTGTGTTTTAGATGGTGTTGTTTTTACTCTTTTTAATTCATGATTACCTTTTTTTTGTCCTGGAGAAACAATCCTTCATGTGTTTTAATTTCTGCAccttttattattatttgatttACAGTGCTAGTGATATACTCGTAAGGATTCTATCTTTGTACATTTTCCTTTTATGCCCTTTTCTTTGTCCTGAAAGAGAACATGAAAAAGCAACCGTTTGGAgaattacataaaaaaaaaaaaaaatctaacatcCTCAGGTAATTCCCCATCTTGCATTGTAAGGACAAAAGCATGTTTTGCCTGTCACCTATGGATGTTAAATCATTGTTGCAGAAAGAGTGAATTTGTGTACTGTGTATGCCTAGACTGCTTTAAATGGAGTAACAGTAACTACACATTCTACTGCACTTAAAATAGTTAACCTGCTTTGCCTCCTGTATCTGTCATGTCCCACATCTACTGACTCAAACTAATGTACAAAGTTTTTGTTCTCCTAGTTTTGGACTGATCACGGTAAATGTGGAACTGTTGGAACGGACTAAGTTGGATTTGAGGTTAATTAAATAAGCATGGAACGATGGTTTGAAGTATGAAATTAAGGTGTGTACCATTTTTGGCTGTCAAACTTAGCTTCTGTAAGACAAAACAGAAAAGCTAACTCACTGAAATATGTCAATTTTTTAAAATACACCGATGTTCCTCTGTTTCTGCTCCGTGTATTTTTGGTCCAAAGAAATGTGTTTGGACCACATTTTAACCTATCCAATTTATCTGACCATGACCCACTCAAAACAGTTGAATATGAAACATTACTCCTTTCACTGTTCAACATCCAGCTTGTTCGATATTTAACTTTTGttacaaatgtttttttgctCTTAAAATGTGAAAAGCAGCTTCTCAGGGAGTACTTATTTGCTGTCCGAGTTTGAACCTATTTGTACTGTTCATACACAATGTTATAATTCAACAGACAATTTCCATTTTTCTCTGCTAGCATGTGACATTTCGTTGTTTGAGTACCTCCTGTTCCATGTTGACTGTGATCAGATTATATATGCTGATCAGTTTTACGATCTGGAGCGAAGAGCCTGTTGTGTATCTGTACCTGCTTGGGCCTGTCCTGATATTCATGATCTAAATCTCTAAAGGGCGTTGAAACTAAATAAAAATGCTTTTATGAAAA

Function

GO: NA

KEGG:

id description
K22415 ZC3H11; zinc finger CCCH domain-containing protein 11

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1671801 lncRNA upstream 165250 52176739 ~ 52176958 (+) True G1461331
TU1671771 lncRNA upstream 211398 52130593 ~ 52130810 (+) True G1461302
TU1671768 lncRNA upstream 215157 52126815 ~ 52127051 (+) True G1461299
TU1671635 lncRNA upstream 229085 52111723 ~ 52113123 (+) True G1461175
TU1671760 lncRNA upstream 232633 52109215 ~ 52109575 (+) True G1461292
TU1671921 lncRNA downstream 41348 52405341 ~ 52405572 (+) True G1461440
TU1672467 lncRNA downstream 51119 52415112 ~ 52415333 (+) True G1461938
TU1672481 lncRNA downstream 58175 52422168 ~ 52423010 (+) True G1461948
TU1672559 lncRNA downstream 139182 52503175 ~ 52503874 (+) True G1462021
TU1672699 lncRNA downstream 341330 52705323 ~ 52705583 (+) True G1462159
XM_021568755.2 mRNA upstream 43947 52291226 ~ 52298261 (+) True LOC110494062
XM_021568754.2 mRNA upstream 61964 52274254 ~ 52280244 (+) True LOC110494061
XM_036950110.1 mRNA upstream 68217 52190599 ~ 52273991 (+) False LOC110494060
XM_036950112.1 mRNA upstream 68217 52247791 ~ 52273991 (+) True LOC110494060
XM_036950102.1 mRNA upstream 220230 52026267 ~ 52121978 (+) True LOC110494059
XM_021568762.2 mRNA downstream 102 52364095 ~ 52368350 (+) True LOC110494066
XM_036950114.1 mRNA downstream 13172 52377165 ~ 52381124 (+) True LOC118936244
NM_001160474.1 mRNA downstream 25233 52389226 ~ 52393138 (+) True LOC100301636
XM_021568764.2 mRNA downstream 34562 52398555 ~ 52402423 (+) True LOC110494068
XM_021568766.2 mRNA downstream 80722 52444715 ~ 52454863 (+) False zgc:113307
TU1670644 other upstream 1251319 51080132 ~ 51090889 (+) False G1460249
TU1670568 other upstream 1444764 50894940 ~ 50897444 (+) True LOC110494047
TU1670065 other upstream 1565136 50776529 ~ 50777072 (+) True G1459769
TU1669855 other upstream 1906502 50430807 ~ 50435706 (+) False atxn7l2a
TU1669722 other upstream 2158512 50181165 ~ 50183696 (+) True LOC110494957
TU1674769 other downstream 1810021 54174014 ~ 54189617 (+) True G1464092
TU1674872 other downstream 1892388 54256381 ~ 54264616 (+) True LOC110494100
TU1674965 other downstream 2107712 54471705 ~ 54474472 (+) False LOC110494110
TU1674964 other downstream 2107952 54471945 ~ 54473872 (+) True LOC110494110
TU1676946 other downstream 3632655 55996648 ~ 55998174 (+) False G1466124

Expression Profile