RNA id: XM_021568766.2


Basic Information

Item Value
RNA id XM_021568766.2
length 2185
RNA type mRNA
GC content 0.50
exon number 8
gene id zgc:113307
representative False

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 52444715 ~ 52454863 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aagagggagagagggagagaaggagagagggtgagaaggagagagggaagagaaggagaagagaaagagggagagagggagaagagaaagccGGGAGAGAGGGACGAATATGGAGGATGTCTAAGGCCTGGGGTGTATGCCTCAGGAATGTATTTGGCAGTGGGTAAATACTGCAGGTagcctgaacacacacacgctcacgccCATTCAGTGCCACATGCTCATCTGTGCAGACAGTGAAccactactactgtctactgctaCTGTACATGGAACCACAGCTCAGGAATACTAACAACCACAAACCTGAACCCATAAAGAAGATGTGTGTCTGCAACTTACAACAACAAATGGCAGGAGGGCAAACTCATACCTCAATTCCTCAGCTGTATTAAGGTTGTCTTACAGTATCACCATGGCGGTACAAGTGTCGGTGCTGTCCCTAGTCCTCACTCTAGCCCTGGGCCTGATGCTGAGTGTCTGCAGGCCTGTGTGTGGCACCCCAGGGACAACCCAGGACCTGGACTATGGAGGGGTTCCTCTCTGGATCAACCGTCTTCTGGGGGAACCCTCTGTATTCAGCCTGAGGGGCCGAATGGACCGGGCATGGTACAGAGCCAACAACCCCCAGTCCTGCCCTGACCTGTGTGACTGTCCTATCCAGTGGCCCTCAGCTCTGTACTGTGACCACAGAGACCTGGGAGAGCTGCCGGACAGCATGCTTTACAATACACAATACCTGTTCCTGCAGGGCAACAACATCTCGtccctgccctcctcctctctcaccaaCTCCTCAGGACTCCGCTGGCTCATCCTGGATGATAACCGTCTGCAGACAGACGGGCTGGAGACCTCCACGCTGCAGAACCTGACCCAGCTCCAATACCTGTTCCTCAACCACAATAAGCTGACTGTCGTGCCCTCTGGCCTGCCCAGGAGCCTGCGGCAGCTCCGACTGGCACACAACCTCATCACCAGCATCTCCCCGGGAACCTTTGGGAACTTACATAATCTTACATTGCTGCTACTGCAGGGGAATAGGTTGAACGTGATTACAGAGACTGACTTCACAGGCCTGGTGTCTCTTAACCTGTTGAGCCTGAGCGGgaacctcttctcctccttcccctcccaccttcctccctccatccagcaGCTCTATCTCTCCAACAACTCTCTGTCTGGCCTGGGGGAGGAAAGTCTACAGGGCTTCACTAatctcaggtacctGCGTCTGAGCCGCTGTGGTCTAGTGAGCCCTTCCCTCCACCCCCAATCCTTCAACCTGTCTTCCCTTGTGGAGCTGGATCTCTCTTACAACAAGCTGACAACCATCCCCCTGGTTCCCCTCACACTACAGTACCTATACTTGGAGGCCAACCACATACAAGAGTTTAACGTCTCTAGTTTCTGTCGGGAGGTGGGTCCTCTGTCGTACTCCAGGATGAGGATCCTTCGTCTGGACGGGAACAAGATGTCCTATCATCTACTACCACCTGAATGGGTCTACTGCCTACGAGTCCTGCACCACATATACATCTAACCCTGACCTCGTACCTCTAACCCCCTGACCCTGCCACAACCCTGCTTTGAAGCTTACCTGGAAAGATTCTGTCAAGATTCCACAGGTCCGAACATTCagaaattaacacacacacacacacacatgcccacaaGTAGGTCATTCAAACGCACATCCTTCAAACACACATCACTCATGCCCACTCGGACGCACGTTtggacacacacaaacgcaaGCAAACGCTTACATGCTCTCAGAACAGGTCTTCAATACTcaatacatgtattttttgttgttatttttttatcctcCAGGAGTAGAGCTGAGTCTCATTTAATGTTGTTTTGCTAGTCTCACTGTAACCACTTTATACTGTAACACAGTCTGATCAGTGTATGAAGCACGTATTCATTCAAATCATCCACAAACATCACCCACCAAGGCTTGTTAATACATCACAGTACTGTAGAGTCAACTTGGAGTTGAACTGATCCAACACACACGTGTTAATGCGCACATTGTATGCGTTTTGTTACTGTAACGTTTTACAATATCGTCAATGTTTTGCTAAAGGTCAAATGATGTGCTTTATTGGATGTATGACTGTAACGCAATGTTTTTGAATATGAACAGAACAATAAAATCTTCACCATTATCAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1672481 lncRNA upstream 21705 52422168 ~ 52423010 (+) True G1461948
TU1672467 lncRNA upstream 29382 52415112 ~ 52415333 (+) True G1461938
TU1671921 lncRNA upstream 39143 52405341 ~ 52405572 (+) True G1461440
TU1671801 lncRNA upstream 267757 52176739 ~ 52176958 (+) True G1461331
TU1671771 lncRNA upstream 313905 52130593 ~ 52130810 (+) True G1461302
TU1672559 lncRNA downstream 48312 52503175 ~ 52503874 (+) True G1462021
TU1672699 lncRNA downstream 250460 52705323 ~ 52705583 (+) True G1462159
TU1672712 lncRNA downstream 267417 52722280 ~ 52722667 (+) True G1462172
TU1672949 lncRNA downstream 325545 52780408 ~ 52780630 (+) True G1462399
TU1673085 lncRNA downstream 502154 52957017 ~ 52957711 (+) True G1462526
XM_021568764.2 mRNA upstream 42292 52398555 ~ 52402423 (+) True LOC110494068
NM_001160474.1 mRNA upstream 51577 52389226 ~ 52393138 (+) True LOC100301636
XM_036950114.1 mRNA upstream 63591 52377165 ~ 52381124 (+) True LOC118936244
XM_021568762.2 mRNA upstream 76365 52364095 ~ 52368350 (+) True LOC110494066
XM_021568760.2 mRNA upstream 80722 52342116 ~ 52363993 (+) False zc3h11a
XM_021568768.2 mRNA downstream 38908 52493771 ~ 52499544 (+) True LOC110494072
XM_021568769.2 mRNA downstream 184759 52639622 ~ 52699632 (+) True LOC110494073
XM_021568772.2 mRNA downstream 276535 52731398 ~ 52752182 (+) True LOC110494075
XM_021568782.2 mRNA downstream 355295 52810158 ~ 52974852 (+) False LOC110494076
XM_036950119.1 mRNA downstream 355295 52810158 ~ 52974852 (+) False LOC110494076
TU1670644 other upstream 1353826 51080132 ~ 51090889 (+) False G1460249
TU1670568 other upstream 1547271 50894940 ~ 50897444 (+) True LOC110494047
TU1670065 other upstream 1667643 50776529 ~ 50777072 (+) True G1459769
TU1669855 other upstream 2009009 50430807 ~ 50435706 (+) False atxn7l2a
TU1669722 other upstream 2261019 50181165 ~ 50183696 (+) True LOC110494957
TU1674769 other downstream 1719151 54174014 ~ 54189617 (+) True G1464092
TU1674872 other downstream 1801518 54256381 ~ 54264616 (+) True LOC110494100
TU1674965 other downstream 2016842 54471705 ~ 54474472 (+) False LOC110494110
TU1674964 other downstream 2017082 54471945 ~ 54473872 (+) True LOC110494110
TU1676946 other downstream 3541785 55996648 ~ 55998174 (+) False G1466124

Expression Profile