RNA id: XM_021568799.2


Basic Information

Item Value
RNA id XM_021568799.2
length 2228
RNA type mRNA
GC content 0.47
exon number 3
gene id LOC110494090
representative True

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 53969497 ~ 53977112 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGCACGCTGCACAGACACCTAGGGATGCGAACGTGGGCCTATCTCTCATAGACTACGCCTAATTGGGACACCTCCTTACTATTGGAATTAACCGTCGAAACACGTAAACGGAAAACAAACTTGTTAAACTTTGGAAAAACGGGAAATGATAAATAAATGAACAAGGAACAGATGAGTATCCAGTAAGTCTCTCACCTCACTGATCTCTGGTGCTGGAAGCAGTGTTTTTGCGCTCAGGGTGAAACGCTTTAGTGGCCAGTTAACGAATGAATGATGGAGGACCAGCGAGACCAAGACGTGTGGGCGATGATGAACGATTCATGGACCAACTCGAGTCGCGGTGGAAACGAGACGGGTACCAGGAACCAGACCGGCGTGAACCCCCTGAAGCGGAACGAGGAGGTGGCCAAAGTGGAGGTGACCGTTCTTGTCCTCGTCCTGCTGCTCGCGTTGGCCGGTAACCTTTGCGTCCTCTTGGCTATACATACGAGCAAGCACAGCCACTCTCGAATGTACTACTTCATGAAACACCTCAGTATTGCGGACCTGGTGGTGGCAATCTTCCAGGTCCTCCCGCAGCTCATATGGGACATTACATTTCGCTTTTACGGGTCTGATTTACTGTGCAGGCTGGTGAAGTACCTACAGGTTGTCGGGATGTTCGCGTCCACCTACATGCTTGTTCTAATGTCCATAGACAGATGCTTGGCGATATGTCAGCCCCTCCGCTCTCTGCACAAGAGGAAGGACTGTTTTTATGTGATTGCTTCTTGGATGCTTAGTCTGGTTTTCAGTACCCCTCAAGTGTACATATTTTCCTTGAGGGAGGTGGGCAACGGAGTTTATGACTGTTGGGGAGACTTCGTAGAACCCTGGGGCGCCAAGGCGTACATTACATGGATTAGTCTTACAATCTACATCATTCCAGTGGCTATTTTAAGTATTTGCTATGGCCTGATAAGTTTTAAAATATGGCAAAACTTTAAAATGAAAACCAGACGGGATCAGTGTATGTCTCTGACACCGCGGACGTCCAAAGGTGCAGCGCTCTCTCGGGTGAGCAGCGTGAGGCTCATATCAAAAGCGAAGATCCGAACTGTCAAAATGACTTTTGTCATTGTCGTAGCTTATATTGTTTGTTGGACTCCTTTTTTCTTCGTACAAATGTGGTCGGCATGGGACCCTGCTGCACCCAGAGAAGACATGGCGTTCATCATTGCCATGCTGCTGGCCAGTCTGAACAGCTGCTGTAACCCGTGGATCTATATGTTCTTCGCTGGCCACCTGTTCCATGACCTGATGAGGTGCTTCATCTGCTGCTCCTCACAGTACCTGAAGGCCTCACAGTGCGGAGGGTGTGACCGCCAGCAGAGCCGCAGGagcatctccacctccacctccactttCGTCATCAAGAACCATAGTAGTCAGAGGAGCATCACTCAGACCACCAGCACATGAGGAGTGAGGACCATGGAGGAGATGAGTTGGGGTGGGACAGGAACTCACTACTACTGAAAGCCCTTCTTCATATCAGTCAAAGAGTGGGTTGCATGGTGAAGACTTAGATCTTCACCATGCAATGCTTATCGATGGGGTGGGCCAGATACCAGCAAGAGGTGCAGCACACAGATCTCCAGCACATAAGACCATGAAGAGAGGTTAAGTTGCGTACTCTAAACCTGAAAGACCTTCATCCGAGGCTTGGTGTGGGCCAAGTACCCCTGTAAGACCAGGGCCTCATTTCCCAGAACCTTTGTAGCGTTAAGATCATCGTTAGAATGATCTTACGATGTATCTTTAGTAGccaagctgtttcccaaaaccatcattaCTAAAATTGCACTTGAAAACCCTCATTAGTTTCCGAatgcctcagaccactcgtagaacagctaagtgcATCGTTAGTGTGCATTGCCCTTTTATTCACAGAATATCTTAGCCTAAACATCTTGATTCTATGTTCAGCCCTCTGTCTGACTGTGACCGCCGATAACTTCTGAACGAAGTTCAATACAGATATAAAGTGGCCCAAGTATTTGCCATTGTTATAAGTGGAGGATAAAACAATGCTTCAAATTAAAACTGAGATGACTTCATTGAAAGATAAATAGGCTACATGGGCCtattcagtgccttcagaaaatgatcacaccccttgactttttccacattttgttgtgctacagccagATTTGAAATatcccataatatcaaagtggaa

Function

GO: NA

KEGG:

id description
K04229 OXTR; oxytocin receptor

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1674635 lncRNA upstream 607 53967576 ~ 53968890 (+) True G1463968
TU1674616 lncRNA upstream 27967 53941328 ~ 53941530 (+) True G1463949
TU1674564 lncRNA upstream 72231 53896990 ~ 53897266 (+) True G1463899
TU1674552 lncRNA upstream 78658 53890285 ~ 53890839 (+) True G1463887
TU1674537 lncRNA upstream 90134 53879164 ~ 53879363 (+) True G1463872
TU1674736 lncRNA downstream 40043 54017155 ~ 54017811 (+) True G1464065
TU1674770 lncRNA downstream 169927 54147039 ~ 54189617 (+) False G1464092
TU1674763 lncRNA downstream 187372 54164484 ~ 54198868 (+) True G1464091
TU1674772 lncRNA downstream 189119 54166231 ~ 54203457 (+) True G1464093
TU1674836 lncRNA downstream 203967 54181079 ~ 54181512 (+) True G1464156
XM_036950127.1 mRNA upstream 108361 53794018 ~ 53861136 (+) False LOC110493210
XM_036950128.1 mRNA upstream 108361 53794018 ~ 53861136 (+) False LOC110493210
XM_036950129.1 mRNA upstream 108361 53794018 ~ 53861136 (+) False LOC110493210
XM_036950130.1 mRNA upstream 108361 53794018 ~ 53861136 (+) True LOC110493210
XR_005037005.1 mRNA upstream 117798 53794018 ~ 53851699 (+) False LOC110493210
XM_036950132.1 mRNA downstream 51912 54029024 ~ 54043837 (+) True LOC110493211
XM_021568802.2 mRNA downstream 75871 54052983 ~ 54090080 (+) False LOC110494093
XM_036950133.1 mRNA downstream 97474 54074586 ~ 54090080 (+) True LOC110494093
XM_036950134.1 mRNA downstream 147313 54124425 ~ 54165315 (+) True LOC110494094
XM_036950138.1 mRNA downstream 196009 54173121 ~ 54198904 (+) False LOC110494095
TU1670644 other upstream 2878608 51080132 ~ 51090889 (+) False G1460249
TU1670568 other upstream 3072053 50894940 ~ 50897444 (+) True LOC110494047
TU1670065 other upstream 3192425 50776529 ~ 50777072 (+) True G1459769
TU1669855 other upstream 3533791 50430807 ~ 50435706 (+) False atxn7l2a
TU1669722 other upstream 3785801 50181165 ~ 50183696 (+) True LOC110494957
TU1674769 other downstream 196902 54174014 ~ 54189617 (+) True G1464092
TU1674872 other downstream 279269 54256381 ~ 54264616 (+) True LOC110494100
TU1674965 other downstream 494593 54471705 ~ 54474472 (+) False LOC110494110
TU1674964 other downstream 494833 54471945 ~ 54473872 (+) True LOC110494110
TU1676946 other downstream 2019536 55996648 ~ 55998174 (+) False G1466124

Expression Profile