RNA id: XM_036950136.1


Basic Information

Item Value
RNA id XM_036950136.1
length 2702
RNA type mRNA
GC content 0.47
exon number 15
gene id LOC110494095
representative False

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 54173121 ~ 54198904 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ttccgagtctcatagcaaagggtccgaattcttatgtaaataagTGTTATGGAAAAGCATAATGATCCCAATTTGAGGTTCAATATGCTTTCCCAGCAGGAGATGGGTCTGGTCCATCCTGTCCCTGTGCCAAGCACCCAGACCAGGGGTCAGTGGTCAAGCAAGCTGGAGTTCCTCCTGGCTGTGGCCGGACAGATCATAGGCTTGGGGAATGTATGGAGGTTCCCATATCTGTGCTACAAAAATGGAGGAGGGGTGTTCTTCATCCCTTATGTGCTCTTTCTGTTCACCTGTGGCATTCCACTCTTTCTCCTGGAGACCTCCTTGGGCCAGTACACCACGCAGGGCAGCATCACCTGCTGGAGGAAGATCTGCCCCCTGTTTGAAGGACTGGGTTATGGTAGTCAGGTGGTAGTTCTATATTCCAGCATCTATTACATCATCATTCTAGCCTGGGCCTTCTTCTACCTCTTCTCCTCATTCAGCTCTGAGCTCCCCTGGgccagttgtagaaacagctgGAACACAGCAACCTGCATGGAGTTTGACAGAAGAGTAGTGGGACATCTAAATTGGACAGTAGCAGGAAACGTAACATCGCCAGTGAGAGAGTTCTGGGAGAGAAGAGTTTTGAATCTCACAGACAGTCCAAACAAGCTAGGCAGTGTTCGCTGGGAGCTGGCTCTGTGTCTTCTACTGTCATGGATTCTCTGTTACTTCTGTGTCTGGAAAGGAGTGAAGTCTACTGGGAAGGTGGTCTACTTCACTGCCACCTTCCCCTATCTGATGCTGGTGGTGTTGCTGGTCCGTGGACTCACACTGCCGGGGGCAATAGATGGTATCAAGTTCTACCTCTACCCAGACCCAGCCCGCCTCACTGACCCACAGGTGTGGATGGATGCTGGAACACAAATCTTCTATTCCTATGCTATCTGCATCGGCTGTCTGACTGCTCTTGGCAGCTACAACAAGTATGACAACAACTGTTACAAGGACTGTGTCTACCTGTGCCTTTTGAACAGTGGAACCAGCTTTGTGGCCGGTTTTGCGATCTTCTCTGTTCTGGGCTTCATGGCTTATGAACAAGGGACAGACATCTCAACCGTGGCCGAATCAGGTCCTGGCCTGGCATTCATCGCCTACCCTCGTGCCGTGGCCATGATGCCATTACCACAGCTTTGGgccatcttcttcttcatcatgATAATCCTACTGGGTTTAGACAGTGAGTTTGTAGGTCTGGAGGCATTGATGACAGCCATCTCAGACATGTATCCCTCCTTCTTCCTGGTTGGCCATCGGCGTAaaatcctcctcatcatcatcagtgTGGGTAGCTTCTTCATCGGCCTGGTCATGGTCACAGAGGGAGGCCTGTATATCTTCCAGCTGTTTGATTACTATGCATGCAGTGGGATGACTCTGCTTCTCTTCGCTATACTACAGTCAGTGTGTATCAGCTGGGTTTATGGTGCAGACCGTCTGTACGATAATATAGAGGACATGATCGGTTATCGACCATTACCCATCATTAAGTACTGTTTGAAGTATGGCACTCCAGTCATTTGCACTGCTACATTTCTTTTCTCCTTGATAAAGTTTACTCCGCTGAAGTTCAACAACACCTTTCAGTATCCTTGGTGGGGTTCCGCCATTGGCTGGTGGttcactctctcctccaccctcatgGTTCCTCTATGGATGGTTTACATCGTGAGCGTCACTCCTGGTACACTGCGACAGAGACTGTCCATCCTCACCACTCCGTCAGAGGATCTCCCCATGACCAAAGCTCAGAAGAATTCCCTCCTGGCCAAGCAGTCAGATCACGACAGACCCCTGGGGGACACGGAGATACCAGCCTGGGGCCACAACCTCCTAGACAGAGACACTGGCCCCCTGTAGAGACACTGGCCCCCTATCTCAGCTACCATCCCTATAGGACTAGAGATAAGCAGGTCCAGCCAGTCACTCAAGGTCCTGacataaacaatacaaatacttCCTGTTGTGTAACAGAGACAAATGTGACCCTTTGCTTGGTCTGAGTGGCTTAGTACAGAACATAATCCACCCCATGCCTTTTTCTTGGGAGGGAGATGTGGGCAAGTGTTTCCAAAACACACACTATTTCCTATATGTAGCGCTGATGAGACATAGAAGCACTGGTTCTGGAAAGTGAAAAGAGAGATGCGGTCATTCTGTTTGGTCCAGAAAACCCTACCTAGAATGATTAGAATTACAGGTCAATCTTTCTGTCTCGTGACAGAATGCAGAGAAAGCATCTGAAGTGAGATATTGAGTAAGGTCCGACAAAATATGGACCTTTGAAGTTGTCCTTTAACCAGGACTGTGGTCATGGCAGAGTAATGGATTAATGGATCAAACACGTGTCACACATCATGGTGGAAACAAAACATGACGGTCATGCTATTGGTCCTGGGGTCTGTATACACAAGTGAacaaactattttttttaaagatacattTTATCTTTGATTTGGGTGGGTTTAATAATCCAACATTGTTTTTTTCTACTACTATGTAATTTCTTAAGACTTTGTGAAGTATGACATTTGTGAAAATATATCGATGGTAAATTATAAGGGATTGTGTAGATGCATATATAGTAGAAACACTATAAAATACTGTGATAGGATTTGATGCCAATATCAATAAACTCATCAAACCTTGTGCCATGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1674736 lncRNA upstream 160643 54017155 ~ 54017811 (+) True G1464065
TU1674635 lncRNA upstream 209564 53967576 ~ 53968890 (+) True G1463968
TU1674616 lncRNA upstream 236924 53941328 ~ 53941530 (+) True G1463949
TU1674564 lncRNA upstream 281188 53896990 ~ 53897266 (+) True G1463899
TU1674552 lncRNA upstream 287615 53890285 ~ 53890839 (+) True G1463887
TU1674773 lncRNA downstream 13962 54212866 ~ 54226850 (+) False G1464094
TU1674774 lncRNA downstream 21738 54220642 ~ 54226850 (+) True G1464094
TU1674866 lncRNA downstream 52136 54251040 ~ 54251278 (+) True G1464184
TU1674908 lncRNA downstream 131354 54330258 ~ 54332025 (+) True G1464223
TU1674939 lncRNA downstream 196414 54395318 ~ 54396302 (+) True G1464252
XM_036950134.1 mRNA upstream 13139 54124425 ~ 54165315 (+) True LOC110494094
XM_021568802.2 mRNA upstream 88374 54052983 ~ 54090080 (+) False LOC110494093
XM_036950133.1 mRNA upstream 88374 54074586 ~ 54090080 (+) True LOC110494093
XM_036950132.1 mRNA upstream 134617 54029024 ~ 54043837 (+) True LOC110493211
XM_021568799.2 mRNA upstream 201342 53969497 ~ 53977112 (+) True LOC110494090
XM_021568821.2 mRNA downstream 57423 54256327 ~ 54264613 (+) False LOC110494100
XM_021568817.2 mRNA downstream 66512 54265416 ~ 54276020 (+) True LOC110494098
LOC110493213 mRNA downstream 103558 54302462 ~ 54316540 (+) True LOC110493213
LOC110493214 mRNA downstream 118825 54317729 ~ 54318723 (+) True LOC110493214
XM_036950146.1 mRNA downstream 151941 54350845 ~ 54361786 (+) True slc2a11a
TU1670644 other upstream 3087565 51080132 ~ 51090889 (+) False G1460249
TU1670568 other upstream 3281010 50894940 ~ 50897444 (+) True LOC110494047
TU1670065 other upstream 3401382 50776529 ~ 50777072 (+) True G1459769
TU1669855 other upstream 3742748 50430807 ~ 50435706 (+) False atxn7l2a
TU1669722 other upstream 3994758 50181165 ~ 50183696 (+) True LOC110494957
TU1674872 other downstream 57477 54256381 ~ 54264616 (+) True LOC110494100
TU1674965 other downstream 272801 54471705 ~ 54474472 (+) False LOC110494110
TU1674964 other downstream 273041 54471945 ~ 54473872 (+) True LOC110494110
TU1676946 other downstream 1797744 55996648 ~ 55998174 (+) False G1466124
TU1676956 other downstream 1816673 56015577 ~ 56016613 (+) False G1466131

Expression Profile