RNA id: TCONS_00046313


Basic Information

Item Value
RNA id TCONS_00046313
length 4507
RNA type mRNA
GC content 0.40
exon number 19
gene id XLOC_023418
representative False

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 21131874 ~ 21150169 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

tctctctatctctctcactcacagacaaaagaaagaaaatagaaaCAAAGGGAGTCATACGTAAAATATGCAAATTGAAAGCGTGCTTGTCCTCGCTGCTTTatgagctggaggagtttgactgtaagtaaacctgttgccaggtgtgagtgagtgagagcgCGTGGGTAGGACGGTCGCAACAACTGGGACAGTCGACACTGCAGCTCACTATAACCACACCAATCATCGCTGTCGAAAGTTTGAGAGCATTTGGAAAAACCCGCGACGACTGAAGTCCATGATAACCTTCTTACAGCGCTTAATGAAAACCTGGAACTCCTACAACCAGGACTTACTGAACACGAGCCATTCAGTAGAAAAGTATGACTGAAACTCCCAAACCGCTGATGGGCAATGAGCTCGCGCAAGAGAACGGTCAATCTGGGGAAGTCAGAGGGAGCTCAGAAGAACAAGAGATGAAAGGCATAACCCAAACACCCAAACAACCGATGGGAAAAGCAACGGATGGGAAGAACCCAGAAGAGCAAGAGGCTCTGGAAGTCACAGTGCAGTTCACAGCAGCACCTCAGTCTACTGATTCTTTGTATTATACAAGTTACAAACAGAGGAGTGACGAGTTTCGCAAGTTATTCAAAGAGGTTCCTGAGCATGAGAAATTGGTTGTAGACTACACCTGTGCGCTCCAGAAAGATATCCTGTTACAGGGACGCATCTACTTCACAGAGAACTGCTTATGTTTCTACAGTCATGTGTTTCGTGGAACAAAAATCATGGTAAATATGAAGGATATCATCTCAGTATCCAAAGAGAAGACTGCAAAATGGATACCAAATGCCATTCAGATCAGTACTAATTCAGAAAAGCTCTTCTTTAGCTCCTTCTCAACAAGAGAGAAAAGTTACCAAAGTATATTTCGCCTTTGGCAGAATGTTCTGATGGAAAAgAAATTGACTAAGTTGGAGCTGTTGCAGATGGTTAGGCAACATTATGGCAACGACTTAGGATTGAGTCATGATGAAATGGAAAGTTTTCAAACATCAGTAGATACGATCACGCCTACCCTTCCCAGTCTGAATATGCGCGGAGAGGATTACACCGGGAGGCCAGAAAGGCCAACATCTCTTCGTCTTCCTCACGGAGAGCTAAATTCCTATGAGGCCTCCACACCACAAGGAGACGACACACAGTCTTCAGTGGGTCTGCACAGTGTGCTCTCAGCAAACGGAGGGGATGATTCTCTCAGCACCCCATCCCATCAGCTCAGTCCAAATCTGTCATTAAACCGCTCTGGGTCTGAACGGGTGTCAAAACGTTCCTCTTTCTCTCTGGATCTGAATGCTAATGAAGACCAGCTCTCTGACAACAGCAGATCTGACAGTCTGGAAGAGGTGGAAGAACGTGAAACCGCATCTCCGGTGTCTCAGGGAAGACTGTTTGTGAACCGGGTCTTTCACATCAGCGCTGAGAAGATGTTTAACTTGCTTTTCTCCGATTCTAGTTTCACAAGGAGGTTTATGGATATCAGGAAAATCACAgGTATAACCGCTACCCCTTGGAAAAAGGAGGCCTCTGGCTGTATGAAACGAACTTTGAACTACACCATCACCATTAACAACCCTCTAGTTGGCAAGTTCTCCACTGCTACAGAGACCCAGACATTATATAAAGAGTCAAGGGAGGGTCAGTACTACATGATAGATTCAGAGGTCTACACCCATGATGTTCCTTATCATGACTACTTCTACACTCAGAATCGCTACTGTATCATTCGTAACTCCAAGCACAAGTGCAGACTCAGGATTTACACTGATGTCAAATACAAAAAGCAGCCTTGGGGTCTTGTTAAATCCTTTATCACCAAAAACTCCTGGAGTGGCCTAGAAGACTACTTTAGACACCTTGAGGCAGAGCTGCTAGATGAAGAAGCAGAGTTGACTCAAGGAAGTGGAGATGCTGGGAAGACGGGTGCTTTGCGCAGGAGAAGAAGAACGTATAGTCGCACCTTGCAGGAACACATGAAGCCGGCAAAAGCACAGTACAGCACAGACTCAGAACAGCAGAGGACTGGAACCATGGGTCCAATGGACATCAAGAACACACCACACCGATGGAACATCACTTCAGTTGTGTTTGGAATGAGCTTAATACTTTTTGTTCTAGTGGTTCTGAACTTGGGGCTCTTCTTCAAACTTTGGGCCATGGAAGATGTTGCTCACCGCATGTATCTCAACACTAAGCACAGAATGAAGGAGAGGGTAGAGTCCAGtttgcCACCTGACCTAGGGCCCAGACACGGTATGCCTCATAGAAGTCAGGAGGAAGTTCATTTACTGAGAGCGGTGCTGCAGGACTCCATTAACCTTCTTGagcagCTCCGCAGTTCACTACTAGTGCTTCAGCAGAACTTTCAGGTGTACAACAGAACCTCCTCTCCACTGTAAATGGTTTTGAGTTTGGTGACCCGACAGCACAAGGGTATTCATCCCATAAGACCTGCCCGCTTCTGAGGACTGTTGCCATAGGGGCACTGCCACCCCAGGGCAGAATCGTAGCTTGGTTCATCGTCTCTTAGGCCAGGTTTGTTGCCGTTGgacgtttttttattttgaagcttgaTTTCGTCCCAGAGGAGATGTTCACATTTAAAGACTGAAGATGAAAGAGAATTTGTGAACTTAAAGCTGAAGGAGAAGAGTGGCTGTCTTTTTCTCGTTCTTCACAGTTGATGTTGCTGCAGTGAAAGCAACAGTGATGTAGCAGGTTGCGAAACACAATAATCTCTGGGATGCTGAACTACAACCAAGccagataaaacaaaagaaaccaaaaaaagtCTTGGACTTAAGGGGTTTGGTGTGGCTGCAAAGGGTATCTGATGATTGAGCTGGCAATGCAGGCCCGTTGCCTTTGGTTCATGTTAAAGGTCTGCCTAACATTTGCTCTTGTGgtcttttttttcttgatttagaCCGTTGTTGTCTTAAGATACATCTAAGAATTTATTAAAGCAGGGATCAACACTGACAAATGATTGTGAAATTTGTATATTTGTAGATTTTTGGATACACATCCGGTTTTTAATATTGTGTAAAGGTACAGCTTTATGTGGAGAAGATAAAGAACTGGAGGTTTAATGTAAATGGAGTGGTGATGCTTTATGTACCTAGAAATGGTTTACACCTTTTGGTTGTTGAGCTTTTAGATACTATATTGTAACTACTGTGAAATAAACTTGTGAATTCTGTACAATGGACAAAGTAAACGTTAATTTATTAAAAGACGATGTgtaattttcaagcatttatataTGCTTTTTGTTTTGGATTATTGGCCCGTTTTcatcagaatttttaaaaaatttcttctgaaactatttataaataaaaatctcaTCACATTACAATGTTTAAGTTGTGatcatttttaatttacagtagCCAACATTTGATCAAAAAGGTTTATTAAAATTGTCGTGAGACCAGAATGGACTTCCATAGGGTTATTCGATATGttaaggacaactttgatgaaaggttgtGATCCTGTTttaatgttgactactgtatacacaGCTATGGAAGAAATGAGAGCACTTCTCTGTTTGTCTTGGTTTATTAGGCTTTACTTTATAATGTAGGTCTcatgacatttcttccaaatttcaaataaactATTGAGAAAATGAAAAGTGGTCAAAACGAATATTttaattttgctatttaaaatCAGGATTACTCTCCTGAAGTTAAAACCGTGGTATTGTgctgtctaaaaatgaataagaACGCATctgaaaacaatttttttgtattttaggtcgaattttttttttttttttttttgtcattttattgtcaaaatgctgtttattttatttccttgaCAGAACCTATAAGTGATGTGCTGTCGCATTCACTGAGGACTGAGCATGCACGTTGAACTACTGCACTGCACATCAGGACTTACTGTACTCTTTAAATTAAATAGCAATCATCCTcctaaaaaaaaagcttatttttctGATCATACAGAGAACTTGGTAGGTAAAACTGTTTTTCCAGTAAACAgagaaatgtaataataataaatccaatatatcattatttatttatgaaaacctCTTCAAAGAAAGTATGTTTATGATCTCTACTACACATACCAAATTTAGGTACAGATTCAGTTTTCCACCTCAAAATCATCCTTTTGGCAATTACCATACCAAATAACATGGCTTgtctttatatttattaaacatctctAAGTTACTAAATATCGCAACAACAGCTAGAAGTGGACATGGTTTAAAAAACTTTAGAAAAACACATCAAATATATTTTCAATTACAAATTCTTGTAATTTAGGACACGACCGTATTAAGTGGGTTAGGGACCCTTTTGTTGTTTTACACCTAATACAGAGTGGAGATATCTGAGGAAACGTCTGCAGTTTCTCCTTAGATAAGTATAGCTTATGCAGGGTTTTAGATTGAACATTAATTAAGCAT

Function

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050506-88 Predicted to act upstream of or within lipid transport. Predicted to be located in endoplasmic reticulum membrane and plasma membrane. Predicted to be integral component of membrane. Orthologous to human GRAMD1C (GRAM domain containing 1C).

Ensembl:

ensembl_id ENSDART00000193256

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00047175 lncRNA downstream 630573 20450027 ~ 20501301 (-) False XLOC_023407
TCONS_00046291 lncRNA downstream 630573 20470778 ~ 20501301 (-) False XLOC_023407
TCONS_00046288 lncRNA downstream 660883 20450615 ~ 20470991 (-) False XLOC_023407
TCONS_00046290 lncRNA downstream 662584 20450838 ~ 20469290 (-) False XLOC_023407
TCONS_00047174 lncRNA downstream 946849 20181997 ~ 20185025 (-) True XLOC_023400
TCONS_00046319 lncRNA upstream 76364 21226533 ~ 21228953 (-) False XLOC_023420
TCONS_00047176 lncRNA upstream 76364 21226533 ~ 21231171 (-) False XLOC_023420
TCONS_00046320 lncRNA upstream 78700 21228869 ~ 21231171 (-) True XLOC_023420
TCONS_00046855 lncRNA upstream 180847 21331016 ~ 21369754 (-) False XLOC_023421
TCONS_00046322 lncRNA upstream 218042 21368211 ~ 21369580 (-) True XLOC_023421
TCONS_00046312 mRNA downstream 267 21122836 ~ 21131607 (-) True XLOC_023417
TCONS_00046309 mRNA downstream 41290 21058779 ~ 21090584 (-) False XLOC_023416
TCONS_00046310 mRNA downstream 41357 21059686 ~ 21090517 (-) False XLOC_023416
TCONS_00046311 mRNA downstream 41427 21078004 ~ 21090447 (-) True XLOC_023416
TCONS_00046308 mRNA downstream 175093 20941360 ~ 20956781 (-) True XLOC_023415
TCONS_00046317 mRNA upstream 3951 21154120 ~ 21172122 (-) True XLOC_023419
TCONS_00046318 mRNA upstream 56074 21206243 ~ 21258945 (-) False XLOC_023420
TCONS_00046321 mRNA upstream 180584 21330753 ~ 21343982 (-) False XLOC_023421
TCONS_00046323 mRNA upstream 221110 21371279 ~ 21471389 (-) False XLOC_023422
TCONS_00046324 mRNA upstream 222224 21372393 ~ 21470766 (-) False XLOC_023422
TCONS_00046297 other downstream 473206 20647475 ~ 20658668 (-) False XLOC_023409
TCONS_00046286 other downstream 600288 20450027 ~ 20531586 (-) False XLOC_023407
TCONS_00046292 other downstream 660784 20470954 ~ 20471090 (-) True XLOC_023407
TCONS_00046277 other downstream 944444 20187316 ~ 20187430 (-) True XLOC_023401
TCONS_00046273 other downstream 1092724 20032340 ~ 20039150 (-) True XLOC_023397
TCONS_00046357 other upstream 812883 21963052 ~ 21963168 (-) True XLOC_023437
TCONS_00046358 other upstream 813881 21964050 ~ 21968116 (-) False XLOC_023436
TCONS_00046365 other upstream 921052 22071221 ~ 22097763 (-) True XLOC_023443
TCONS_00046371 other upstream 1158775 22308944 ~ 22309058 (-) True XLOC_023445
TCONS_00046372 other upstream 1221817 22371986 ~ 22372100 (-) True XLOC_023446

Expression Profile

//