RNA id: XR_005037008.1


Basic Information

Item Value
RNA id XR_005037008.1
length 3287
RNA type mRNA
GC content 0.45
exon number 12
gene id LOC118940476
representative False

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 54426385 ~ 54434260 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCGGATCGATGAAAGCCCAAACTGATCGATCGTTGTCATACTTTCAATGTACTTTTTTAAACAAACTAGCCCTTTCATTAATTAATGATTTGACGTATAGGCCAACCAAATGGCacgcaacacatccaccttttttatttatttgtaaatgaTACCATACCCTGTCATTTTAGGGTAAAATTCGATGTACTTTACATCACGCTCATCAGTTCAGTATTTGTACAGAAGGTTGCTACAGTAACGTTTGCAAGACAACACGCGGTCACTGTGAGTGGTAGTAACGTCACCGTCATTGGTTCTATCATAAAAATCCGCATGTTTATTAATTTCACTGGGTATGACACAAAGATAGCTAATTTAGCAGGTGTGGTGATACTGATGATTTTGGGCACAGATGGTTTGTTTACATAGCAGTCAGGATAATTAACGTCGcatgttaggataattaacgtggcaggttacgagaactaacgcagcaggaTATGtgaattaatgtagcaggttatgAAAAGAGTTAGGATTAGTTAATGCTTCGGTTGTCAACAGCTGTTTTCCCCGACGCGACCACTGGATAGAGATGTAGGCCTACCCCATCTAACCACAACAGAGGAAACGTAAACAAACCATATGTGGCGACAAATTACAGAGGAAAAGGCTAAACGAGAGGGTTTACTCAGCCCAAAAAATCTAAGCGAAAATAAAACCATGAGAGTGTCGAATTTGTTCAACGAAAATGTAATGTCTTATTTTCTACCtgaggtttatttgatcgaatagaagtttcgTTATGCTTAAATTGTTACGCGTATGCTGATATAAATTGGACACGTGACATCccagcaactttgagaaaaaaacactttatattgGAGTTGTCTCGAGATGGTTTAACGTCGTATTAATGTAATGTGGCTGTAGCATATAATCTCTCGTCATTGAATATGGGCGGTTGAAGTTAACCACCCTCATCGAATATTAAAAACAAATAACAATAAatagatgtatccaccaatccaaaaaATAGGCGGGAACTAGACAGCCAGCCGTGCCACTTTGTgaacaacgactcccattgttagggcggagagacATGTAGTCTTGTCAGTTTTCCATAATCTTTGGTTTGATGAAAAcatctggtgggaaaatgcataTTGTTTTAGGCAGATAAGGTTATGCGCATGAAAATCTGACCCAAATTGGttggaaacctagctatagacGTGAAACTAGTTAGGGAATTAAGAAAATGTAATGGTAGCTAAGTTATTCATATGAAGATAATGAAAGGGTGATTTCTGTTCGGCTAGTTGAATAAGTCAGTAATCTGATTGACAGCCAGTATAGTACGAGCTAGTGAGTAACGTTACTGTTCTCGGGTTGTTAGCTAGGCAACTGTTGTGGCAATGATTTCTAGAGGTAGAGGAACCCAAAAACCAAACATATCTGGTACAAAAGGAACTCCACGCATGGCTATATCCAGTTATAAACAATCGGATACACCTGGAACCAAGGTGGAAGACAAGGCGCCGAGAATAAGGCAACTTGCATGGAGTTCTTCAAACTATGGATACAGGACTTTTGGATTGGTTCATCCTTACAATGCCAGGTCTCACATCACAGAGTGGGGCTGGAAGGATGAGTGGTGGACAGCTAGGAGGGAGTTGAGGCTCACAGTGAGGGCAGAGTGCCATTACAGCTGAGAGGCGGTGTCTGCGTTTGGCTTGGGACAGCTGGGAAGTGTACATGAGGATGAAACACAGGATGCAAGAATCTGCTCTTCAGTTCCAGAAACTCACAGCTCTATGTTGGGTGTGGACTATGTGGCAGACTAGGATGTGGAGGAGGTATGATGCATGTGATATGGAGGACCAAGCACTGGGCTCTGACTCTACAGAGTAAGGTGAGTTGATTACATCAATATTTATGTGGCTCTTTTTCAATGaatctttccttgattcctcacatCCTCATCACCCCTCAAAAAACACAATGGAGAGGAAGGTCCATTCACTACCTTGTTGTCTGTGAATGACAATTTGCAATGAATGTCCATTCGCATAATTGTATGATTTATGCATGTTGTTATTCTGTCATAGGCACTACGTTCATGCCTGTATAAGCTTTGTTCACCTCCGCCAAGCTAAGAGGAAACCACAAGCTGTTGCTGTGCGAGCCTGGCAACTCCGCTTGGTCCTGAGGTATTGGTATGTGTGGAGAAGTGGACTacagagagaggtggacagagagcaGGGTGTTGACCATGTGGCACAATGCAGCATACAGCATAGCGCTGGAGACACTATCCTaccccacacacactgacagatgtGAAGTCACACACTATTGCAAGAACAACATTAGCAATACTCACCTTATGGTTAACTTCATGTGCCGTCATCTACCTCAACATCATACTTCGTAACATATTGCAAGAAGATTAAGTGAATTTCCTGAGTTTATGTGCAGATTTGGACTTGTGCATGCAGGAGTCAGAGAGATCAGTCAGCAGCAAGTCAACACCGCCATCTATTGCACGCTGGTCTGAGAAGTCTGGCCCTTAATATCGCTCAGATACTCATCGACTCAACAAGAACATCGCTGTCCAGCATCATCATCACACTGCAGGTATTGGATACTCTGGCAGCAACGTCTGGAGGAGGCTGAAGATTGGGTACTTCAGATGCAgatgacacacacccactacAGCGTCAATACACCTGGGCCTTTTACACCTGGTGGGGACATTCAGAGGAGAGAAAGGATCAGAGGCTGGCTGAGAGGATGGTAAAACAGctgtcctgacacacacacacacaccatcacggTACAGCCATACACCCAGACAGAGCCCAGCTGTCCTGCCCTTTGGGCCTTGCTGCATGAAGAGAGGTTGTGTTTAAGTAGAGCCTGGCACCACTGGCAGTGGAGGGCGGGGAAGGAGAAACGGAGAGCCTCTGACATACTGGACCACCATACTGTAGTCCACAACACACTGAGCCAGTGGAAGGACAACGTCACCATGATCCGGGACAGGCGAAACCAAGAGGCGCAGGCAGGTCGACATGGGGATGTGTCTTGTGTGCGACGCGCCCTGAGTGGCTGGAGTGAGGAGGGTTCTGCGTGTGTGGAAGGAGACTGCAGCAGCCAGGAGCAGTGAGAAGAGGGCAGAGAACCACTACCGGCACTGTTCAGGCTAAGGTGCTGTTGGCATGGAGGAAAGCCACATCCTGTGTCAAACTGTCACCAGCAGTGAGCAGGGCTCCGAGTCGCATGGATAATGGGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1674957 lncRNA upstream 3762 54422204 ~ 54422623 (+) True G1464265
TU1674954 lncRNA upstream 4564 54421530 ~ 54421821 (+) True G1464262
TU1674955 lncRNA upstream 5614 54420570 ~ 54420771 (+) True G1464263
TU1674956 lncRNA upstream 6985 54419183 ~ 54419400 (+) True G1464264
TU1674953 lncRNA upstream 7989 54418130 ~ 54418396 (+) True G1464261
TU1674980 lncRNA downstream 3391 54437651 ~ 54437938 (+) True G1464283
TU1674976 lncRNA downstream 9507 54443767 ~ 54444828 (+) True zgc:172271
TU1675340 lncRNA downstream 131525 54565785 ~ 54566048 (+) True G1464609
TU1675346 lncRNA downstream 188546 54622806 ~ 54624208 (+) True G1464615
TU1675347 lncRNA downstream 190064 54624324 ~ 54627415 (+) True G1464616
XM_021568824.2 mRNA upstream 42239 54363186 ~ 54384146 (+) True LOC110494103
XM_036950146.1 mRNA upstream 64599 54350845 ~ 54361786 (+) True slc2a11a
LOC110493214 mRNA upstream 107662 54317729 ~ 54318723 (+) True LOC110493214
LOC110493213 mRNA upstream 109845 54302462 ~ 54316540 (+) True LOC110493213
XM_021568817.2 mRNA upstream 150365 54265416 ~ 54276020 (+) True LOC110494098
XM_021568848.2 mRNA downstream 101 54434361 ~ 54453753 (+) False zgc:172271
XM_036950153.1 mRNA downstream 101 54434361 ~ 54453753 (+) False zgc:172271
XM_036950154.1 mRNA downstream 101 54434361 ~ 54453753 (+) False zgc:172271
XM_036950155.1 mRNA downstream 101 54434361 ~ 54453753 (+) False zgc:172271
XM_036950157.1 mRNA downstream 101 54434361 ~ 54453753 (+) False zgc:172271
TU1674872 other upstream 161769 54256381 ~ 54264616 (+) True LOC110494100
TU1674769 other upstream 236768 54174014 ~ 54189617 (+) True G1464092
TU1670644 other upstream 3335496 51080132 ~ 51090889 (+) False G1460249
TU1670568 other upstream 3528941 50894940 ~ 50897444 (+) True LOC110494047
TU1670065 other upstream 3649313 50776529 ~ 50777072 (+) True G1459769
TU1674965 other downstream 37445 54471705 ~ 54474472 (+) False LOC110494110
TU1674964 other downstream 37685 54471945 ~ 54473872 (+) True LOC110494110
TU1676946 other downstream 1562388 55996648 ~ 55998174 (+) False G1466124
TU1676956 other downstream 1581317 56015577 ~ 56016613 (+) False G1466131
TU1676957 other downstream 1581317 56015577 ~ 56016613 (+) True G1466131

Expression Profile