RNA id: XM_036950154.1


Basic Information

Item Value
RNA id XM_036950154.1
length 5830
RNA type mRNA
GC content 0.48
exon number 25
gene id zgc:172271
representative False

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 54434361 ~ 54453753 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAGGCAGCGGTGGACTTTCAGGAGATGGTGGGAGCGAAGCAGAGCGGTTGTGGAGGAGAGTACAGGTGTGGAGAAAACCAAAaggcaccaccaccactcttctTTGCAGTATGTTCAGATTGGGGACTATGTACCGGCAGCATCAGCAGAGCTATAAGGTGACGCAAGAAACGGGACACTCAATGTTGAGACGGGcccgccctcaggtggtaaggggAGgtaTTCTCTTAACCGCATcgttggttatgggcttCTGCAgcacagaaggggagagaggctGAGCAGACAGAACTGGCCCTCTGGCATTGGTCCCTCAGTCTGCAGGCCAAGGTGCTGGAGGCTATGGGTCGCGGAGCAGCACCGGAAGCAGGAGAGGCTGGCCCAGGCTGCCCAGTTCTATAGAGACCAGCTTCTGAGGAAAGGGGTGGCCCACGCCGCTCACATGGGCAGCTTCTGCACCAACATAGCACTTCACAGCCAGAAGCAGAGTTCTTTGCGGTGTCTCCAGGGGTGGTGTTGCAATGGAAACAGACAGCAGTGagGGTGGCGGTGCGTGCTTCCAGATGACAACCACAATGGCCTAGAGTTCTGCTGTACTCCCCGGTCAAAGAGCTGCTACCACCTGCagctcctctaccacctccaacCCAGGTCCCAGTGACAGCGAGCCTCCACCATGCTGCAGCCTCCCTCCCCATCAGTCCCATACTGGCACGCCCAGCGCCCCCATCTCAGTCTCCCAACAGCCCCACATTATGGATCAGTAGACCAGACTGCCCCTCTCCTCATTCATGACCACCTACACTCAAACTAAGgttgtaatgcaacaaaataggaaaaaacaccaagggggatgaatatttttgcaaggttgtaaggcaacaaaataggaaaaatgccaggggggtgaatacttttgcaagccactgtagctAAGACTTGAAGAGGTGTTGAGAAGCTGGCTGCAGACGAGTGGAAGTGAGGGAGAGACTGCGGAGAGGAACACAATCAGCCAAGGGCTGGATGAGGTAAGACTTGAAGGGAAGATGCTGCGGTCATTGGTATATGTAAGGGCCACAATGTCTTCAAGGCAGAGTAATTAAGGATTTATAAACAAACAATGGTgattatgaaaataaaaaaaatggaggaAAAAAAAGTATACTGGCTATTCACCAGTCCATAAAGAACCAGAACCAATCATTGAAGTAATACTTTTTTCATTGGTTTCCTATCCACTTATAAATGAATAACTAAACTGATGGCTTTGATTTAGCATGCATTCCTCTGGAGGTGTCATTTTCATGTGAGCCATAAATCTTCAGCTATGAAAACGGAGCAGTCAGAATTTACAGCAAGTCATGTATATAATAACCATGCCATATTGTGCAATGATTTTTCCCATTTTGTGGCCATTCCAGATTCATTTCCAGCTCTTTGTATTGTTATTGACAGATGGAGTGTATTGGCAGGCTGTCAGCTGAGCTGGCAGAGCAGAAGCCTGTAAATATCTTGCATGCTGCCAGGATCCACAGAGAGTGTTCTCCACAGCAGCACAGCCACAGGacagggactgggactgggacaggCGGTTCTCAGCAGGCCTCCAGAGCATAGGGCTACTGAGCATTACTCTGTCCACCACACTAGATGACAGACCGGACCATGGTCGCCCCAGTGGTGTAAGAGAATGACATGTTGCCATTCTCCACTGGTTGTTTTTTATAGTATAAAAACATCATTATTCAAAATAGAGGAAGATGTATGGAAATTGTTCAATTGAAGCTTTTGAATTAAAAACCCTGATCTTGGTGATAATCGGTTGGACTGAAAAATAATGGCATATGGCAAGGCAGCTGTTTGATTTATGTTTGCCTTGACTATACTGTAATAGCATTTTTTTATATGTATAATGTTTTGGTGTTAGtacattttaataaaatattgGCTACATGCCTAATTATGTTGGTATTTTCTGCATTAAACTTTGCAGTGCTGGACTGTTTTTCACAAAACTATTACCAAAATAAATATAACACTCGATTTTTATTATTACATAATCATGCATTCAATGTGTTCACCGCGATAAGCCAAACAAACTGGAGGTGTGAGATACTGGCAACTGTTCTACAGATCTCAAACGCGTAAAAGTGCTTGGATGCGGGTCGTCCGCGTGACGTTACATGGAAATATTTTCCAGATGCGCGCAGAGCAGTGGCGCAGAATCCCCTATTTTTTGGCTATTTCGGAAGTTCTACGCTTGCACAATAGTTTGATTTCTTTAGGTCGCCTGTAGTAATAAGAAATCATGTTGAATTATGAAGACGGATTTCAGGACGAATTGGAAGGGGTCCGCCAACCTCGCTGCGTAAAGTAAACTGCGTTTGGTTTGTTCAGCTCTTCAGTCCTTTTCAGAGACCAAAATGAGGGCAATGCATGCCATTCTAATAATTTTCATCTGCCTTCACTATAGTTGGGGTAAGAAGGTGCGCTGGTGCACGGTGTCTGAGCAGGAGCAGAAGAAGTGTGCTGAGCTGGCCAAGGCCCTGGTGGCAGTGTTGCCTCCTGCTGCTGTGGCAGCATTCGCAAGGCTCTCCTGTGTCCTTGCCTACAGCACCACTGACTGCATCAACAAGATCAGGGCTAACCGTGCTGACATAGTAACATTGGATGCAGGGGAAGTCTACACTGCAGTGAAGCAGTTTGGCCTCACTGCCATTGCCAAGGAGATCTACAGTGACGGAGGCTGTATTCTGTCGGTGGCGGTGGTGAGGAACCGCACCCTGGACGTGCGCTCCCTGCAGGGCCAGAGAAGCTGTCATACTGGGGCCCGCTGGACGGCAGGCTGGAGTCTACCCTTGGGCTTCCTGCTGTCCCGCAACTACCTGACCTGGGCAGAGGAGCAGCCACTCAGTCAGGCGGTCAGTGCCTTCTTCAATGCCAGTTGTGTTCCTGGGGCGGCTGCCATAGCACCTGGCCTGTGTACCCTGTGTCAGGGTCAGAAGTCCTACATCGCCCAGCGCAACTTCCACTGTGAGACGGCACATGGCGAACCCTTCTACAACAGCCAGGGGGCGCTCAGGTGTCTCAAGACTGGGGCAGGGGATGTTGCTTTTGTGGACCATACAGCCCTGGAGGGTATTGAAGagagtgagagggaggattACCAACTGCTCTGTACTGATGGTACCCGTGCGCCACTAAGCCACTATGGGAGCTGCAACCTGGGAAGGGGACCAGGACAGGGCATGGTCACTCGACTCAGTGTTCGTAAGATCGCACGCAAGTTCCTGGCAGCAGCACAGATGGCGTTTGGCCGGCGGGGTCGAGAGAGGCAACGTTTCCAGCTCTTTAACTCTGCTCCGTTCGGCGCCGCTGATCTGCTCTTCAAGGATGTCACAGAGAAGCTGTCCATTCTAGAGGATAACAAGGACATCAGTCAGGTGCTGGGGCTGGACTATGTGGCTCTCCTCAAAGGCCTTGGTCATGAAGGAAGCTCATTGGAGGACAGTGTTGTGCGTTGGTGCTGCATTAGCCATGCAGAACAGAAGAAATGTGAGCAGTGGGCTCTCAGCATTAAGTCAGACCCATTGGTGTGTGTTAGAGCCATCTCCATGAGCGATTGTGTCGAGAAGATTAAGAGAGATGAGGTGGATGCGGTCTCGCTGGACGCCACACACGCATTCATCGCTGGGAAATGTGGCCTTGTCCCCGTGGTAACAGAGTATTATGGGAAGACGTGCGTACCGGCTGAGGGAGGAGCTGAAAAAGCAGGCCATTTAGAGACAGATGTTTTGCCGTCCGTCGTTGGTGTGGCGGTCGTGAAGCGCTCCACCAGGGGTGTGTTCTTTGGGAACTTTGGGGGCAGGCGCTCCTGCCACGGCCACATGTACAGCCCTGCAGGCTGGCTTCTGCCCTTTAGACACACCCTCAGCCTGGAACACAACAACACCTCTCCCTGCGAACCAAACCAAGTGTACAACGAGGTGTTCTGGAAGGGCTGTCTCCCTGGTTCTCAGGGAAACCTCTGTAAAGTGTGTATGGGGGGCACTGGGGAGGCTGCCACCAAACGCTGTGCAGACAACCACAACGAGCGTTACTACGGCAACATGGGGGCTTTGAGGTGCCTGGTAGGAGATGCCAGTGGGAAGAGCTATGGAGATGTGGCCTTTGTTGAGCAGCACAATCTAGAGAGCAACATCCTCAGTCTGAGCCCCAGTGGGTGGGCGGATGGGTGGCTGTCCTGGGACTTTGAGCTTTTGTGTGGGGATGGCCGGCGGGAACCTTTATCTGAATGGGAGAACTGTAACCTAGGAGCCATCCCACCCAACATCATCATGACAAGACCTGTGCTCACTTCTCGCGTCTACGACTTCCTCATGAAGTCACAGGAGACTCTGGCATCCAACCCAGACACAGAATTCCGTCTGTTTCAGTCCCAGCAGTATGGAGAGAGTGATCTGCTGTTTAAAGACGCCACCCAGTGCCTCATCCACACCAGTCACCTGGACTACCGCACCATACTTGGAGATGAGTTCTACAGACTAGCAGAGACTGTCTTCAACTGCACACACTCAGACATCTTGGAATTTTGCAACCAGGACGTGTGCAGCATATTTTGAGCAACTGAGAGAAGAGAAATCACATGTTTCACATTGACCTATTGTGGAAGCCCTGACCAAAATGTTTGCCAAAATGTAATATTGTTTCTTGCTTCTTGTAATTCCTCAGTCCACACCCACCTGAATGTTAAGAATATATATAGAATTGTCAGATACATTTCAATGAAAGCTTCTTTCTTTTCAGCAATATGTCATTTTTCAAACTTTTGGTAATGTGTGCAGGGGTTCCAAAAGTAGGGTCTGTAGCAAAATCTCTAAatattaaaacaaatattttatttttattttagaaaAATTACTATCTACAACAAATTAAATGGATTTTGGACAAGGGATCCGTGGAAAAAGTTGAAGTTACAATACAATGTCATATTCATGTTCTTAGCCCTTATATGCACAACATGGGCCTGTGAGGCTCACAGATTGGTCTTCACAATACTCCATCAATGATCTTGTTCAACAGAATTCTTCTTCTATTCCGCCAAAATTTGGTTTTGAACACAGTGCATTATTTTAatattgcaaaatgtgtagaattgcaagaaattagctttaaacCGGTATGGTATTGCCAAGGTCTGGACATGCACTGTTTTAGTCAACGTAAAACTGCTTGTATGCTATTTTTAATGCCGTCTACAGTAGGAGTTTTATTCTGATGAGGGCGACTGATGCATTTGCTGACACGAAATGGGTCCCCGACGCAAACAAAGTTTGGGAACCCACTTGTGtaccacacacactgagctatGTACGTTGGTAAATTCCACCGGACTACAAGTCCCAGCGTGCATAGCGGGGGTTGCCGTTCTTCGTTACACTGGTATTTCCTGTCGCTCTTTTTCGTAAGAGTTGGCTGCCTGCTACACTGTCGGCTGTTTATTCAATCAAACGTGTACCTCGTGCCATTGTAAGGTACGTTACATGACGCTTAATTTTATTACTACTTACAATGTCTAATTCATGCCTTTTTGTGGTTCTATGCTTCTTATCGTATTTACTCCACGTAACCTTGTTACTGATGACAGGAGTTCAAATGGTGAGCCAGAACTTGTACACAAATCAGCCTTGACAAAAAGTCGAATACCGTAAAAGACTAAATGAACAATGACTGTGTCAGATAAAGCTAGATACATATAATTATTGCTTGGTGAccataattatattattttaaataAAAGATGTGACAAGCTTGCGAGGAAGCATCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1674974 lncRNA upstream 1078 54426421 ~ 54433283 (+) True LOC118940476
TU1674957 lncRNA upstream 11738 54422204 ~ 54422623 (+) True G1464265
TU1674954 lncRNA upstream 12540 54421530 ~ 54421821 (+) True G1464262
TU1674955 lncRNA upstream 13590 54420570 ~ 54420771 (+) True G1464263
TU1674956 lncRNA upstream 14961 54419183 ~ 54419400 (+) True G1464264
TU1675340 lncRNA downstream 112032 54565785 ~ 54566048 (+) True G1464609
TU1675346 lncRNA downstream 169053 54622806 ~ 54624208 (+) True G1464615
TU1675347 lncRNA downstream 170571 54624324 ~ 54627415 (+) True G1464616
TU1675373 lncRNA downstream 179341 54633094 ~ 54633537 (+) True G1464641
TU1675394 lncRNA downstream 237425 54691178 ~ 54694992 (+) True G1464659
XR_005037013.1 mRNA upstream 101 54426385 ~ 54434260 (+) False LOC118940476
XM_021568852.1 mRNA downstream 18206 54471959 ~ 54473886 (+) False LOC110494110
XM_021568854.2 mRNA downstream 33307 54487060 ~ 54500326 (+) True frs3
XM_021568883.2 mRNA downstream 138802 54592555 ~ 54622676 (+) True slc6a11a
XM_021568898.2 mRNA downstream 199679 54653432 ~ 54662827 (+) True eno1b
XM_036950169.1 mRNA downstream 209376 54663129 ~ 54677374 (+) False rereb
TU1674872 other upstream 169745 54256381 ~ 54264616 (+) True LOC110494100
TU1674769 other upstream 244744 54174014 ~ 54189617 (+) True G1464092
TU1670644 other upstream 3343472 51080132 ~ 51090889 (+) False G1460249
TU1670568 other upstream 3536917 50894940 ~ 50897444 (+) True LOC110494047
TU1670065 other upstream 3657289 50776529 ~ 50777072 (+) True G1459769
TU1674965 other downstream 17952 54471705 ~ 54474472 (+) False LOC110494110
TU1674964 other downstream 18192 54471945 ~ 54473872 (+) True LOC110494110
TU1676946 other downstream 1542895 55996648 ~ 55998174 (+) False G1466124
TU1676956 other downstream 1561824 56015577 ~ 56016613 (+) False G1466131
TU1676957 other downstream 1561824 56015577 ~ 56016613 (+) True G1466131

Expression Profile