RNA id: XM_021568851.2


Basic Information

Item Value
RNA id XM_021568851.2
length 1365
RNA type mRNA
GC content 0.53
exon number 4
gene id sirt4
representative True

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 54453353 ~ 54461322 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTTCTTCGTTACACTGGTATTTCCTGTCGCTCTTTTTCGTAAGAGTTGGCTGCCTGCTACACTGTCGGCTGTTTATTCAATCAAACGTGTACCTCGTGCCATTGTAAGATGCGGTTCCCATGGAGACCCTTGGCGCTGTGTTGCGCAGCCCCTGGGAGACGGGCATCATCATCAGTTCCCGAGGGCATCCAGAGCTTTGTGCCTGCCAGCAGCACCATCGATGCCCACACCCTGGAGCAGCTACAGGCCTTCTTGTCCCGTGCCACGCGCCTCTTCGTCATCACTGGGGCGGGTCTGTCCACAGAGTCTGGCATTCCAGACTACCGCTCAGAGGGGGTGGGTCTCTACGCCCGCACAGACAGGCGACCTATGCAGTATGCAGAGTATATACGCAGTGCCAAGTCTCGTCAGCGCTATTGGGCTAGGAACTATATGGGCTGGCCACAGTTCTCCTCTCATCAGCCGAACTCTGCCCACCTGGCTCTGCAGCAGTGGGAGGAGCAGGGAAAGGTGCACTGGCTGGTAACTCAGAATGTGGACGCGCTTCATTCCAAGGCAGGCCATCAAGGACTGACTGAACTGCACGGCTGCGCACACAGGGTGTTGTGTCTGGGCTGTGGTGCCGTGTCTCCAAGGGAGGACCTCCAGAAACGGTTCAAAGCACTGAACCCTAGCTGGGGTGCACATGCAGGAGGTGTGGCTCCCGATGGTGATGTCTTCATTGAGGACGAGCAGGTCCTCCACTTCCGAGTGCCTTCATGTAAGGATTGTGGGGGTATATTGAAGCCAGAGGTGACATTCTTTGGGGACACAGTGAACCGAAGGACAGTGCAGTTTGTACATGAGAGACTAGCTGAGTCCGATGCGGTTCTTGTCGCTGGATCTTCTTTGCAGGTGTATTCTGGATACAGATTCCTACTGGCAGCAGCTGACCAGAAGATCCCAGTAGCCATCTTGAACATTGGGTCTACCAGGGCCGACCACCTGGCAGAGTTCAGAGTCAGTGCTCGTTGTGGGGAGGTATTGTCTGTCATTCAGCCTCACTGACCACAAAGACAGACGGAAGGCCTCACTAGGACTTCAGTCACTGATCCACAGATACCGTTGTATTGTTTCGAGAACTATTCAGTGGgctctactattctaactcttgGTCAACCTGGCAGCAATGCAATCAGCTTTAGGACATTGGGCTGAAGTGATGGACACTACTAGTAACCAGGAATCATGTGTTATGGGcttgtacatgtacagtgcctttagaaagtattcaaatctctgtaccccacagatacaattatctgtaaggtccctcagtcgagctgtgaatttcaaacacagattcaaccaccagggaagttttcc

Function

GO:

id name namespace
GO:0070403 NAD+ binding molecular_function

KEGG:

id description
K11414 SIRT4, SIR2L4; NAD+-dependent protein deacetylase sirtuin 4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1674976 lncRNA upstream 8525 54443767 ~ 54444828 (+) True zgc:172271
TU1674980 lncRNA upstream 15415 54437651 ~ 54437938 (+) True G1464283
TU1674977 lncRNA upstream 18321 54433557 ~ 54435032 (+) True G1464280
TU1674974 lncRNA upstream 20070 54426421 ~ 54433283 (+) True LOC118940476
TU1674957 lncRNA upstream 30730 54422204 ~ 54422623 (+) True G1464265
TU1675340 lncRNA downstream 104463 54565785 ~ 54566048 (+) True G1464609
TU1675346 lncRNA downstream 161484 54622806 ~ 54624208 (+) True G1464615
TU1675347 lncRNA downstream 163002 54624324 ~ 54627415 (+) True G1464616
TU1675373 lncRNA downstream 171772 54633094 ~ 54633537 (+) True G1464641
TU1675394 lncRNA downstream 229856 54691178 ~ 54694992 (+) True G1464659
XR_005037013.1 mRNA upstream 19093 54426385 ~ 54434260 (+) False LOC118940476
XM_021568852.1 mRNA downstream 10637 54471959 ~ 54473886 (+) False LOC110494110
XM_021568854.2 mRNA downstream 25738 54487060 ~ 54500326 (+) True frs3
XM_021568883.2 mRNA downstream 131233 54592555 ~ 54622676 (+) True slc6a11a
XM_021568898.2 mRNA downstream 192110 54653432 ~ 54662827 (+) True eno1b
XM_036950169.1 mRNA downstream 201807 54663129 ~ 54677374 (+) False rereb
TU1674872 other upstream 188737 54256381 ~ 54264616 (+) True LOC110494100
TU1674769 other upstream 263736 54174014 ~ 54189617 (+) True G1464092
TU1670644 other upstream 3362464 51080132 ~ 51090889 (+) False G1460249
TU1670568 other upstream 3555909 50894940 ~ 50897444 (+) True LOC110494047
TU1670065 other upstream 3676281 50776529 ~ 50777072 (+) True G1459769
TU1674965 other downstream 10383 54471705 ~ 54474472 (+) False LOC110494110
TU1674964 other downstream 10623 54471945 ~ 54473872 (+) True LOC110494110
TU1676946 other downstream 1535326 55996648 ~ 55998174 (+) False G1466124
TU1676956 other downstream 1554255 56015577 ~ 56016613 (+) False G1466131
TU1676957 other downstream 1554255 56015577 ~ 56016613 (+) True G1466131

Expression Profile