RNA id: XM_021568852.1


Basic Information

Item Value
RNA id XM_021568852.1
length 532
RNA type mRNA
GC content 0.44
exon number 4
gene id LOC110494110
representative False

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 54471705 ~ 54474472 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGCCAAACTCAGGTCGTTCAATGATGTCTTTATCTAAGATATTCATAGTCGTTTTTTGCGTTCCATAACAGAAAATGTCTGCAACACGGTACCGTCGGTTTTTGAAACTCTGCGAAGAATGGCCACGGGACGAATCAAAGAAAGGCCGTGATTTAGGAACGTTTCTAAGACAGAGAGTAGCCCTTGCCTTTCGTGAAGGTGAAAACACACAGCTCTCGGATCCAGAGAAGTGTGATCAAATGTATGAAAGCTTGGCCCGGATTAACACTAACATATACAGAGAACGATTCCCCCGCACAAGAGACACCAGTTTTACAGGTGTCACAGTGGAAGAATGTAGAATGCTATTAGCAACAGGTAGCATGCAGCAGATGGATGAAGAGAAGAAGGGCTTGTGGAAAACTCTCACAGAGCGTTTCTCCACCAAACCAGAAGATGTCACCCCTGAGAAGGTTCCTGAAAACAAGTAGCACTTGTGCTGTGTATCTTTCCTTTCCCATTCAGCCACTTTAGAAATAAAACGTTATTCTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1674976 lncRNA upstream 27131 54443767 ~ 54444828 (+) True zgc:172271
TU1674980 lncRNA upstream 34021 54437651 ~ 54437938 (+) True G1464283
TU1674977 lncRNA upstream 36927 54433557 ~ 54435032 (+) True G1464280
TU1674974 lncRNA upstream 38676 54426421 ~ 54433283 (+) True LOC118940476
TU1674957 lncRNA upstream 49336 54422204 ~ 54422623 (+) True G1464265
TU1675340 lncRNA downstream 91899 54565785 ~ 54566048 (+) True G1464609
TU1675346 lncRNA downstream 148920 54622806 ~ 54624208 (+) True G1464615
TU1675347 lncRNA downstream 150438 54624324 ~ 54627415 (+) True G1464616
TU1675373 lncRNA downstream 159208 54633094 ~ 54633537 (+) True G1464641
TU1675394 lncRNA downstream 217292 54691178 ~ 54694992 (+) True G1464659
XM_021568851.2 mRNA upstream 10637 54453353 ~ 54461322 (+) True sirt4
XM_021568848.2 mRNA upstream 18206 54434361 ~ 54453753 (+) False zgc:172271
XM_036950153.1 mRNA upstream 18206 54434361 ~ 54453753 (+) False zgc:172271
XM_036950154.1 mRNA upstream 18206 54434361 ~ 54453753 (+) False zgc:172271
XM_036950155.1 mRNA upstream 18206 54434361 ~ 54453753 (+) False zgc:172271
XM_021568854.2 mRNA downstream 13174 54487060 ~ 54500326 (+) True frs3
XM_021568883.2 mRNA downstream 118669 54592555 ~ 54622676 (+) True slc6a11a
XM_021568898.2 mRNA downstream 179546 54653432 ~ 54662827 (+) True eno1b
XM_036950169.1 mRNA downstream 189243 54663129 ~ 54677374 (+) False rereb
XM_036950165.1 mRNA downstream 189244 54663130 ~ 54677374 (+) False rereb
TU1674872 other upstream 207343 54256381 ~ 54264616 (+) True LOC110494100
TU1674769 other upstream 282342 54174014 ~ 54189617 (+) True G1464092
TU1670644 other upstream 3381070 51080132 ~ 51090889 (+) False G1460249
TU1670568 other upstream 3574515 50894940 ~ 50897444 (+) True LOC110494047
TU1670065 other upstream 3694887 50776529 ~ 50777072 (+) True G1459769
TU1676946 other downstream 1522762 55996648 ~ 55998174 (+) False G1466124
TU1676956 other downstream 1541691 56015577 ~ 56016613 (+) False G1466131
TU1676957 other downstream 1541691 56015577 ~ 56016613 (+) True G1466131
TU1676992 other downstream 1614292 56088178 ~ 56127481 (+) True LOC110494143
TU1677057 other downstream 1745356 56219242 ~ 56220946 (+) True G1466224

Expression Profile