RNA id: XM_021568883.2


Basic Information

Item Value
RNA id XM_021568883.2
length 2274
RNA type mRNA
GC content 0.49
exon number 14
gene id slc6a11a
representative True

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 54592555 ~ 54622676 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACAGTCCTGCAGGCATTATTTTGGACCGTGTCAAATGACAAGTTAGTCACACTAAAGGTGCAGCTCTCATTCAACTATCTAGTCCACATGTCTTTGGGTCCCCCCTCGGGCAGAAGCAGCTGGCATCTTGACAGTGCTGTTATCCATAAAAGCTCCAGCAGCAGCAGACAATTGCACCAACCATTGACTCCACCAGCAGAACTTGCCTCCCgaaccctttctctctcactcgcaggatggctgcttctctctctgcaggcAAGCATGAGACTCTCCCAGGGCCGGTGCAGGACACCCAACAAAGTGTGAAGGAGCGCGGCCAGTGGGATAGCAAAATGGAGTTTATTCTAACTGTGGCTGGCGCTATTATTGGACTTGGAAATATATGGAGATTTCCCTATCTTTGTTACAAGAACGGTGGGGGGGCGTTCTTCATCCCGTACATCCTGTACCTGGTGACCTGTGGCATCCCTCTGTTCATCCTGGAAACGGCTCTGGGCCAGTACACTAGCCAGGGTGGCATCACCTGCTGGAGAAAGATCTGCCCGGTGTTTGAAGGAATGGGCTATGCCGCCCAAGTGATTACTATATATGGATGTATGACCTACATTGTGATTCTGGCGTGGGCTTTCCTCTACCTATTCTCATCCTTCAGTGTTGACCTGCCATGGGCAAACTGCAACAATGCCTGGAACACAGATGCTTGTGTGACATTTGGCAACAAGAATGCCAGCAGCAATTGGACTGGTTCTCTCCTGAATTCGTCATCTTCCGTTGTGGAGTTTTGGCAGCGGCGAGTGCTGCGGATATCAGATGGGATTGAGTCCTTGGGAGGTATTAGATGGGAGCTGGCTCTTTGTCTTCTACTGTCATGGATTGTCTGTTACTTCTGTATCTGGAAAGGAGTGAAGTCTACTGGGAAGGCAGCGTACGTCACGGCTACCTTCCCCTATGTCATGCTAGTGGTGTTATTCGTCAGAGGAGTGACCCTTCCAGGAGCTAAAGATGGCATCTTCTACTACTTGTATCCCAATACAACACGGCTAGCTGATCCACAGGTTTGGATGGATGCAGGAACGCAGATATTCTATTCTTACGCCATAGGCCTGGGCTACCTGACTTCTCTTGGAAGCTACAACAAATACAACAACAACTGTTACAAAGACTCCTTCTACCTGTGCTTGTTGAACAGTGGGACCAGCTTTGTGTCTGGTTTTGCCATCTTCTCCATACTGGGTCATATGGCTCGAGAACAGGGTGTGGACATCTCTGTGGTTGCTGAGTCAGGTCCTGGCCTGGTGTTCATAGTGTACCCCCAGGCAGTGTCCCTGCTCCCCTGCCCTCAGTTCTGGGCTGTCTGTTTCTTCACCATGATCATCCTATTGGGAGTGGACGGCCAGTTTGTCGGCCTTGAGAGCCTAATGACCTCAGTAACGGACGTCTACCCAAACCTCATCAGAAAAGGCTACCGGAGGgagatgctgctgctgctcatctgctgctgctgctacctgGTCGGACTCATCATGGTcacagagGGTGGCCTCTACATCATCCAGCTGTTTGACCATTATGTGTGCAGTGGTGCCACTCTGCTGCTCCTCTCCATATGCCAGTCACTCAGTATTGGATGGATATATGGTGCTGAACGCTTCTGTGACAACATTGAGGATATGATTGGCTATAGGCCCTCCTCCCTGGTCAAGTATTGTTGGCTCTACATTACCCCTACTATCTGCACAGGAACCTTTGTATTTTCCCTGCTGAAGTACAGCCCTTTGAAGTTCAACAACACATATTTGTACCCATGGTGGGCCTACTGGCTAGGCTGGTTCTTGGCTATGTCCTCCTTATCTCTCATCCCCATCACCATGGTCTACAAATTGTACTGGGGCAAAGGGACTTTCTGGCAGCGCCTCCAGACAATCTGTCGGCCAGCAGATGACCTTCCTATGATGATGAAGGAGGAGATGGTAGGTCTCTATGCTCTGGACCATGTTACTGACGATGAGAAGACATACAGCAATAATCTATAGACTGACTATTCTACTACTAGTTTtggggctggtttcccagacacagattaagcctagtggGACTGAGACCATGATTTTTCGTCCAGGACAAGGCTTAATATGTGTCCGGGAAACCAGCCTTTTTTTGTTGTCTATTTttgtaacttaaaaaaaaaatatatatatatatagatacacacacacagtgtcaagaAAACGTATGTGatccctttggaaatacctggatttctgcataaat

Function

GO:

id name namespace
GO:0006836 neurotransmitter transport biological_process
GO:0035725 sodium ion transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005328 neurotransmitter molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1675340 lncRNA upstream 26507 54565785 ~ 54566048 (+) True G1464609
TU1674976 lncRNA upstream 147727 54443767 ~ 54444828 (+) True zgc:172271
TU1674980 lncRNA upstream 154617 54437651 ~ 54437938 (+) True G1464283
TU1674977 lncRNA upstream 157523 54433557 ~ 54435032 (+) True G1464280
TU1674974 lncRNA upstream 159272 54426421 ~ 54433283 (+) True LOC118940476
TU1675346 lncRNA downstream 130 54622806 ~ 54624208 (+) True G1464615
TU1675347 lncRNA downstream 1648 54624324 ~ 54627415 (+) True G1464616
TU1675373 lncRNA downstream 10418 54633094 ~ 54633537 (+) True G1464641
TU1675394 lncRNA downstream 68502 54691178 ~ 54694992 (+) True G1464659
TU1675407 lncRNA downstream 84294 54706970 ~ 54707336 (+) True G1464668
XM_021568854.2 mRNA upstream 92229 54487060 ~ 54500326 (+) True frs3
XM_021568852.1 mRNA upstream 118669 54471959 ~ 54473886 (+) False LOC110494110
XM_021568851.2 mRNA upstream 131233 54453353 ~ 54461322 (+) True sirt4
XM_036950162.1 mRNA upstream 138802 54435315 ~ 54453753 (+) False zgc:172271
XM_021568898.2 mRNA downstream 30756 54653432 ~ 54662827 (+) True eno1b
XM_036950169.1 mRNA downstream 40453 54663129 ~ 54677374 (+) False rereb
XM_036950165.1 mRNA downstream 40454 54663130 ~ 54677374 (+) False rereb
XM_036950166.1 mRNA downstream 40454 54663130 ~ 54677374 (+) False rereb
XM_036950167.1 mRNA downstream 40454 54663130 ~ 54677374 (+) False rereb
TU1674965 other upstream 118083 54471705 ~ 54474472 (+) False LOC110494110
TU1674964 other upstream 118683 54471945 ~ 54473872 (+) True LOC110494110
TU1674872 other upstream 327939 54256381 ~ 54264616 (+) True LOC110494100
TU1674769 other upstream 402938 54174014 ~ 54189617 (+) True G1464092
TU1670644 other upstream 3501666 51080132 ~ 51090889 (+) False G1460249
TU1676946 other downstream 1373972 55996648 ~ 55998174 (+) False G1466124
TU1676956 other downstream 1392901 56015577 ~ 56016613 (+) False G1466131
TU1676957 other downstream 1392901 56015577 ~ 56016613 (+) True G1466131
TU1676992 other downstream 1465502 56088178 ~ 56127481 (+) True LOC110494143
TU1677057 other downstream 1596566 56219242 ~ 56220946 (+) True G1466224

Expression Profile