RNA id: XM_036950167.1


Basic Information

Item Value
RNA id XM_036950167.1
length 5061
RNA type mRNA
GC content 0.54
exon number 17
gene id rereb
representative False

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 54663129 ~ 54677374 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACCGCGGCACATGCTCAGTTATGTCTACAGAGAAAGGAACTTTGAAGGCTGCGTGTGGGAGCTGAGGTCATTGCACAGCTTAGTGGTAGGAATAAAATCGACTCATCGTAGCCTCCATTTTGAGTAGTAGCTATGAAATAGAGGAATTGCATAGTTTGTATCGACCACTACGCTGGCAGTGTCAACATAAAAACGACACAAGCCTCCGACATGGACGACTTGTTCAGTCCGAGAAGGAGCCTGAACAGCACACAGGGGGAGATCAGAGTGGGATCAAGTCATCAGGCCAAGCTCCCTGAGCTGCAATCACGCCCTGTGCTTGGTGTGCAGACCCAGACAGAGAATGAAGAGTTGGTGTGGATGCCAGGGGTCAATGATTGTGACCTCCTCATGTACCTCAGAGCTGCCAGGAGCATGGCAGCGTTTGCAGGAATGTGTGATGGAGGATCCACAGAGGATGGTTGTTTGGCGGCCTCTCGTGACGATACCACACTCAACGCTTTAAACATGTTACACGCCAGCCGCTATGACGCGGCTAAAGCTCTGCAGCGCCTAGTGAAGAAACCCGTGCCCAAACTCATTGAGAAATGTTGGTCAGAAGATGACGTGAAGCGGTTTATCAAAGGTTTGAGACAGTACGGTAAACATTTCTTCAGGATTCGCAAAGAGCTGTTGCCCAACAAAAAGACGGGTGAGTTGATCACATTCTACTACCACTGGAAAAAAACGCCCGAggctgcaggcacccggccctaCCGTCAGCACCGTAGACAGCCATCCTCACGCAAGGCCAAGACTCGCGCCGCCCTTGCCACTGTGAATACCCCCTCCCGCGCCCAATCATTGGACGTGAGTTCGGCCAGTGAGGATGATCTGGACAGTGAAGACAGCGAGCAGGGCACCTGTGGACACTGTGCTACTACCACCTCTAAGGACTGGCAGCACGGCGGCAGAGATAACATCCTCTTGTGTACCACCTGTCGGACCTTCTACAACAAACATGGCCGCCTGCCGCCCGGCCCCAAGCCTGCTGACCCTCCCTTCATGTTCAAACCtgtcaaagaggaagaggagggcaaCGGGAAGCACGGCATGAGGACGCGACGCAGCAGAGCACCGTTGTCTTCACTAAGAAGTGGCCACAAGAGGCGGACAGGCTCCCCTACCAGTGAAGACCAGCAGTCCAGTAGCCATCCGTCTCCTGCACCCAGTGGAGCTAGCTCCACCTCCAACACATCCAGAAGCTCCGGCTCAGACAAGACTGACTCCACAAAGAAGCCTGGCAAGAAGATCAAGGAAGAGGTGCCCCTACCAAAGAGTACTAAACGTTCCAGGGAGAGTGCAGCCCAGGACCCAGAGGAGCCTGAGAGAACAGCAACTAAAAGGACGAAAACACAGCAGGGTGAACAGGTGGAGTGCCGGTCAGAGGGCGATGGAGAGGCTGAGccagaggggggggagggggaggaggagagctgCTCAGACAGCCGCAGTGCCCAAGACGACGGCAGCAGCGACACCAAAGACATCGACCAGGACAACCGCTCCTCCTCCCCCAGCATCCCCAGCCCTCACCAGGGCAACGAGGGCAATGAGAGTGACTCCGACTCCTCTGTCCAGCAGCCCCAGGGTGCCCACCAGGCGGCAGCAGAGACcacccctgctgctgctgcccttgCTGTAACACAGACCGCACCGACTGTTCCTCCAGTGCAGGCTGCAGTCTCGACCACATTCCTGCCCCCCCGGGGCACCTCTCCCTCTGCAGAGCCTGGCCAGGTACAGGCCCAGGTACCCCACTCCCCAGAGCCCCCCCAGCCTGCTCAGGCTGGTCAGTCAGCTGGCTATGAGTCAGGCCCAACACACAgccaacccccacccccctcctcacACCCCATCTCTGGCCCAtcacccctccctccaccactgggACAGgcccttcatcctccatctccTGTGTTCCAgggtcctcttcctccacctggCTCTCTTCCTCCCACCCTGCCCCTCCATGGTGCTCCCACCCAGGGCCCCCGCTCCCAGCGACCCCCTCCTCACATACCCAGGGAACCTCCTTTCTCCCAGGCGATCCCCCTTACTTCTGGGCCCCAAATCAAACCACCCCCAACCACACCCATCCCACCATCGCACAAGCAGCAGCCACCgcacctctcctctgctcccccttTCCCCCAGATGCCGTCCAACCTGCCCCCACCGCCAGCACTGAAGCCCCTCAACTCTCTGCCCAACCAGCACCCTCCCGGtgcccctccaccccccctccagcTCATGCCCCAGTCCCTACCCATGCAGCAGGGACTCCCACCCCAACCTCCCGTGCTCACTCAGCTGCAGAACCTCCATGGCAGAGGCAGTCACTCCCACTCCACCCTACCCTCCTCTGGCCCCTCGGCCTTGCACcctgtcccctctgctccctctacCATGGGTCCAGTTCCTTGTCTCCAGCCCTCCTTCACCTCCATGCCCCTGCGACCCTCGCCCGGAAACCCCATTGGCATGGGAGGGTCACATGTCCAGATTAAAGAAGAGCCATTGGATGAGTGTGAGCCTGAGAGCCCGCCCCCTCCACCTAGAAGTCCCTCGCCAGAACCTTCGGTTGTCGACATCGCCAGCCACGCCAGCCAATCAGCACGGTTTATCAAACACCTGGACCGTGGCTACAACTCGTGTTCCAGAACAGACCTGTTCTTCACCCCTCTGGCCTCATCCAAGCTGGccaagaagagagaggaggctgtGGAGAGATCCAAGAGAGAGGCTGAACACAACgcccgagagagggagagggagaaggacagggagagagagcgggagagggaacgagagaggcaggaagagaaAAATGCTAGAGCGTCCAGCTCGTCCCACGACAGCCGTATGAGTGATGTCCAGATGATCGGCCAGGTCCACATGCGTTCCTCCTTCGAGCAGCCCCCCACCAGCGTGGCGGCCGTCCCCCCTTACATCGGCCCCGACACCCCGGCCCTGCGCACCCTTAGTGAGTACGCCCGACCCCACGTCATGTCCCCCACCAACCGCAACCACCCCTTCTTCGTGTCCCTGTCCCCCGGGGACCCACTGCTGGCCTACCACATGCCCGGCCTGTACGCCGCCGACCCCAGCATGCGAGAGAGGGAGCTCCGTAACCTCCGAGAGAGGGAGCTCCGCGAGAGGATGAAGCCCGGTTTTGAGGTCAAACCCCCGGAAATGGAGACCATGCATCCATCAGCCAACCCCATGGAGCACTTTGCCCGACATGGAGCCCTGGCCCTGCCTCACATCGCTGGGCCGCCCCACCACCCCTTTGGCCATTTCCACCCGGCCATGCAGAACcacctggagagggagagacaggcgcTGGCCCTGGCCGGGCCCCAGATGCGTCCGGAGCTGAGCTACGCTGAGCGGCTGACTGCCGAGAGGCTCCACGCAGAGAGGATGGCGTCTGTGGCGAATGACCCGGCCGCCAGGCTGCAGATGCTGAACGTGACGCCGCATCACCACCAGCACTCCCACATCCACTCACACCTGCACCTGCACCAGCAGGACCCGCTCAACCAAGGTGAGGGTAATGGCCCCCACCCTCTGGATCCCCTGGCTCCAGGGCCCCGCCTGGCCCGCTTCCCCTTCCCCGGAGGCCCCATCCCCAACCCTCTGCTCAACGACCTGCCCCATGACCATGACATGCTGCGACACCCACTGTTTGCCTATGCCGCTGTTGCAGGAGCAGGGTACCCCCGTGAGCTTCAGGGCCCCATCCCACAGATGTCTGCAGCCCACCAGCTCCAGGCCATGCACGCCCAGTCAGCAGAGCTGCAGAGGCTGGCCATGGAGCAGCAGTGGCTGCATGGACACCACCACCTACAACATGGGGGGCCTCTGCCCGGGCAGGAGGATTACTACAGCCGCCTGAAGAAAGAAGGTGACAAGCCATCGTGAGACACCTGACGGTGTGAGTCACCATGGAAATACATAGAGATAGCAATGCTGTGTACTTTTGACATTATGCGACAACTAATCTTAGTGTATCCTTTTCTAAAAGTCTAAATGTAATTGAGAATGAACTATCTTTGGATCTGTATGCTTGTTTCTTGCTCAgcacttaaagggatagtttaccCCCAAATCATCCAAGTTTTTGTGAGACTTTTTCATATTTCAATAATGGTCTGGTTATAGAAATTGAAGATTAGTGTAGTCTCTATTCCATACCATTTGTTGTCTACCACTCCATATGGATTTTGTTGTTTCTAGAGTTCTCCTAATGCAGTATATATAGCGAGTGCGGAATATGGCTCACCTTTTTTGGAGTTATGAAAACatctgacaaactttgatttgggGGGGTGAACTATAATTTTAATTTCTAAACAATCTGAATGATCTCCTTGTACAGAATGACATTTAATATTAGATGTTTGGATGATTGACTGTAATAACCTTGCATGACTGTTTCCCTTTCGATTTTCATCAGAACTTAGAGTAGCGTTGTTCGTTTGTGTTTAGACAACTAAAAAGCATAGTAGATTAATTTTATTCTATATCTGCTAAATATTTGTCTAAACCCTAAAGTTTTATATATTTCAAGATAAGTTTTCACAATTTAACCtaagctctgacacacacagtacatttttGAGATTGTAAATAATATATGTTCAATATTCTATATTAATAACTATGATTATTATTAATATGAGGTGTGAATTCTTGACTTGCAAGCTGGCACAATAAAATTAAATTATTTAGATATACACACAGTATATATAGCGTTATAAAGTAAAGTGGGTTAGCACAGAAAATTATAAATTGGAGTATCACTATTGTCACCCCTGACAGAAAACAGTGTTTAGAACAGTGGATCAGGAAAGTAATATTGTGTTGGTTAGACGAAACAGAAAAAGCATTATAACCTTGGCATCCCTACCATGGACAAATCCTGTTTTAATATTTatgtgaaataataataatatggaaaaacaaaaatgtatgcatTGCATATTTATTTGAATAAATAATTCTGCAATAACATGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1675373 lncRNA upstream 29593 54633094 ~ 54633537 (+) True G1464641
TU1675347 lncRNA upstream 35715 54624324 ~ 54627415 (+) True G1464616
TU1675346 lncRNA upstream 38922 54622806 ~ 54624208 (+) True G1464615
TU1675340 lncRNA upstream 97082 54565785 ~ 54566048 (+) True G1464609
TU1674976 lncRNA upstream 218302 54443767 ~ 54444828 (+) True zgc:172271
TU1675394 lncRNA downstream 13804 54691178 ~ 54694992 (+) True G1464659
TU1675407 lncRNA downstream 29596 54706970 ~ 54707336 (+) True G1464668
TU1675902 lncRNA downstream 311665 54989039 ~ 54989364 (+) True G1465118
TU1675904 lncRNA downstream 312551 54989925 ~ 54990146 (+) True G1465120
TU1675946 lncRNA downstream 339463 55016837 ~ 55017440 (+) True G1465162
XM_021568898.2 mRNA upstream 303 54653432 ~ 54662827 (+) True eno1b
XM_021568883.2 mRNA upstream 40454 54592555 ~ 54622676 (+) True slc6a11a
XM_021568854.2 mRNA upstream 162804 54487060 ~ 54500326 (+) True frs3
XM_021568852.1 mRNA upstream 189244 54471959 ~ 54473886 (+) False LOC110494110
XM_021568851.2 mRNA upstream 201808 54453353 ~ 54461322 (+) True sirt4
XM_021568879.2 mRNA downstream 36137 54713511 ~ 54717607 (+) False iho1
XM_021568880.2 mRNA downstream 36138 54713512 ~ 54717607 (+) False iho1
XM_021568878.2 mRNA downstream 36326 54713700 ~ 54717607 (+) False iho1
XM_036950174.1 mRNA downstream 36326 54713700 ~ 54717607 (+) True iho1
XM_036950171.1 mRNA downstream 55689 54733063 ~ 54742363 (+) False slc26a6l
TU1674965 other upstream 188658 54471705 ~ 54474472 (+) False LOC110494110
TU1674964 other upstream 189258 54471945 ~ 54473872 (+) True LOC110494110
TU1674872 other upstream 398514 54256381 ~ 54264616 (+) True LOC110494100
TU1674769 other upstream 473513 54174014 ~ 54189617 (+) True G1464092
TU1670644 other upstream 3572241 51080132 ~ 51090889 (+) False G1460249
TU1676946 other downstream 1319274 55996648 ~ 55998174 (+) False G1466124
TU1676956 other downstream 1338203 56015577 ~ 56016613 (+) False G1466131
TU1676957 other downstream 1338203 56015577 ~ 56016613 (+) True G1466131
TU1676992 other downstream 1410804 56088178 ~ 56127481 (+) True LOC110494143
TU1677057 other downstream 1541868 56219242 ~ 56220946 (+) True G1466224

Expression Profile