RNA id: XM_036950171.1


Basic Information

Item Value
RNA id XM_036950171.1
length 3765
RNA type mRNA
GC content 0.47
exon number 19
gene id slc26a6l
representative False

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 54733063 ~ 54742363 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

catataaaggATGATTTATTGAATGTACCCTTATCTTTGATAGTGATAGAACCTCAGTCAATGGTAATGCCCAACGTGCTTTGGATGAAAAAGTTAACTTTTTAGTAAACCTGTTTTATTCGGTGTTTGGAAAAAACGTCTCTTTCACCTGTCATATTGTACAAAAGGGGGACTGACAGGCACTTCACGCGGCTTACACGGGGAGGATCGAAATAGCCCAACCTGGTTCTTATATACTGTTAAGGACATATTGGACGAGGTGGTATGGGTATGGGCCGGAAGGCTAGGGGGTACAGAGTGGAGAGGGATGTGCTGGATGAGCAGAGGCTGGAGGAGCTGGCTCAGAGAATGGACTACTCTGACACTCACCCTTCCCTGACCAAGCAGCTTAAAGAGTCCTTCAGATGTACTGTACCCAGGCTGAAACGTAGTGTGGTGGGCTGTCTGCCTGTACTCTACTGGCTGCCCCGCTACTCTATCTGGGACTATGGCATGCCGGACCTCATCTCTGGTATCAGTGTGGGCATCATGCACTTGCCACAAGGTATGGCATATGCATTGCTGGCCTCCTTGCCCCCAGTGTTTGGGCTATACACATCCCTCTACCCTGCATTGGTCTACTTCTTCTTTGGGACGTCTAGACATATTTCCATAGgTACGTTTGCAGTGCTCAGTATCATGGTTGGAAGTGTGACAGAGAGGTTGGCTCCAGACAGGAACTTCCTGGTCATGCTGAATGGGACTAACCTGACTGAGGTGAACATCACTGCCAGGGACTCCTACAGGGTGCAGGTCGCTGCTGCTACCACCGTCCTAGGAGGACTCATCCAGGTGGTGCTGGGACTGGTGAAGTTTGGGTTTGTGGGTACCTACCTGTCGGAGCCACTGGTGCGAGCCTACACAACAGCAGCTGCTGCTCACGCTGTGGTCGCTGTGATCGCACAGCTCTTTGGGCTGTCCACCACACGCTTTAGTGGGCCCTTGTCACTGGTGTATACCCTGGTGGAGGTGTGCTCCAAGCTACCTCAGACCCATCTCCCCACACTGGCGGTCAGTGGTGTATCCATGGTGTTTCTCATCGCAGCCAAGGAAATCAACTCTGCCATCAGCGCCAGACTGCCTGTGCCCATCCCAGTGGAGCTCATCACGATTGTGGCAGCAACGGTGATATCGTCCTACACCCACCTAAACGGCAACTACACAATCTCAGTAGTGGGAGAAATTCCCAGCGGCCTGGCTGCCCCCAGGTTACCTGATGCTAGCCTGTTTAAAGAGGTGATGGGGGATGCGTTTGCCTTGGCTATTGTGGGCTAcgccatctccatctctcttggGAAGACGTTTGCACTAAAACATGGCTACAAGGTGGACAGCAACCAGGAGCTGGTGGCGCTGGGTCTCAGTAATGCTGTGGGGGGATTCTTCCAGTGCTATGCTGTCTGCTCCTCCATGTCCCGTAGTCTCATACAGGAGAGTACCGGAGGCAAGACACAGATGGCTGGAATGGCCTCTGCTGTGATTGTGTTGGTGACTGTGCTGAAGCTCGGGCCTCTGTTCCAGGAGCTGCCAAAGgcaGTGCTTGCAGCCATCGTCTTTGTGAACCTGAAGGGCATGTTCAAGCAGTACTATGACATCATCACTCTGTGGAGGAGCAGCAAAGTTGATCTGGTGGTGTGGCTGGTGACCTGGGTATCCACACTGCTGTTCAACCTGGACATGGGCCTTGGTGCCTCCATCACCTTCGCTGTGCTCACTGTTATCTTCAGGACCCAGCTCCCGAAGTACTCAGTTCTGGGACACGTTCCAGGGACAGAGCTCTACTTGGACATGGAGACCCACAGAGAGgtgaGAGAGGTCCCTGGCATCACTATCTTCCACTCCTCTGCCACCGTGTACTTCGCCAATGCTGACCTCTACCTGGAGGCTCTAAAAGGAAAGAGCGGGCTTGATATCAGCAAGATGATCATCTACAAGAGAAGACAGGAGGCCAAGCAGAGACGCAGAGACAagagagctgagaggagagctaGGAGGGAGGCCAAGAGACAAAAGCATGCTCTGAGAGCGGCAGAGCAGAAGACCGGGGTCTTCTCCGTAGAGGAGGCGGCGGGGCAATGGAAGGAACCGGGGGgcggagatggagacagggaggagtcACTGGGAGACGACCAACGAGGTTGGTGCGGCCGCGAGAACGGCACCGTGTTCGTCATGCCAACAACGCCCCGCACGCCCGATGACCAATGCAGCTGGGAGTACCTGAAGGGCAGTAAAGACCCAGACTGTGCCACCCTGGGGGCAGTGTCGGAACTGCAAGACGGGGACACCACCACTCTGGGGTCCAGTAGTGAGGATACCCTGAGCCGGGAACTGGATAAGGTCTCGCTAGGATCGCTGGGCAAGTGGACCTGGGACATCCACTCCATCATCCTAGACCTTTCCACTGCTAACTTCATCGACACCGTGGCCATCAAGACCATGAGAAACATATTCCACGACTTTGGTGAGATTGATGTTACTGTCTACATGGCTGGGTGTCAGATGTCCGTGGTGGAGCAGTTAGAGCTGGGAGGGTTCTTCTCGGAGTCCATCACGAAAGGACGTCTGTTTGCTACTGTCCATGATGCTGTGCTGCACTGCCTTGGCCACCAGGGAACATCAATGCCCAGCTATGAATATTCTCTGGAGATGCAGTGCAGCACCAAACTCTGAGGACCCTTACTGAAGTCTGACGTCTCTGTATATTCTATTTTATGGGGTGGGCCCCTATCCTTTTGAAAAGTAACTTTCAATTGGGGATATAGTATATgggtatatactgtgtatatatatatatatggtaacTATAATGCCTTCAAAAAATGAAAGGTACACTAAACCACAACATAGGGTTGCAAAACTACTGATAATTTAACAAAGTTTAATTTTAGTATTTAACAGTAATCTCTGGTCATTTATATTTACATAACTTTTATCAAATGTACACATAtgactttaaaaatatatatatttatatgtattcaTATTGTCTACaggtttctagtggatagaccatatgatTCAAGAGAAAACAGCCCAAGTAATgaaaaaaagcatctaatcaacaatgaaATCATTTCCTATTAACACCGCAACTCTTCCAACTtttgacttttttcacaactgccaagTTTTGCCCCAAAACACATATTGACAGAGTAAAATAAGTACAAGTGGAAAAAGATGTAAGGATATtacatgctgaaaccctcatattataCACCAACGGAATTCACTTAGTTTATGGGTTATATtaaggataatgttttacagctttgtcatttaATATATTTTGGATTTTTAAATAGTTGGAAAGTATTAATTTATATACTTTACATTTGATGAAATTTCAATAAAATCCTGAAAGTTTTTATGGGTGTGCCAGTGTTGTCACGAACAGCTTTGGCAATTGAAATAACTCTATAATTCAAAATCTAAAGTAAACTTTATTTGGAGCAGAGGAAAGTGATTCAGTGCATTTGGAAACAAACACCAAACAAGGTGAACAACACAACGTGGAAAGTGAAACATTTGGAATAAATAAGTAATAAATAATACTTCAAATAAATAGAAATTCaatacctgtagtaggatgagaaGTAATGGATGCAAGTGACACAAGcagacatatatacagtaccagtcatatattttacattttagatttttcaaagtagccaccctttgccttgatgacagctttgcacactcttggtattctctcaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1675407 lncRNA upstream 25727 54706970 ~ 54707336 (+) True G1464668
TU1675394 lncRNA upstream 38071 54691178 ~ 54694992 (+) True G1464659
TU1675373 lncRNA upstream 99526 54633094 ~ 54633537 (+) True G1464641
TU1675347 lncRNA upstream 105648 54624324 ~ 54627415 (+) True G1464616
TU1675346 lncRNA upstream 108855 54622806 ~ 54624208 (+) True G1464615
TU1675902 lncRNA downstream 246676 54989039 ~ 54989364 (+) True G1465118
TU1675904 lncRNA downstream 247562 54989925 ~ 54990146 (+) True G1465120
TU1675946 lncRNA downstream 274474 55016837 ~ 55017440 (+) True G1465162
TU1675960 lncRNA downstream 285264 55027627 ~ 55027914 (+) True G1465176
TU1676008 lncRNA downstream 320388 55062751 ~ 55062966 (+) True G1465224
XM_021568879.2 mRNA upstream 15456 54713511 ~ 54717607 (+) False iho1
XM_021568880.2 mRNA upstream 15456 54713512 ~ 54717607 (+) False iho1
XM_021568878.2 mRNA upstream 15456 54713700 ~ 54717607 (+) False iho1
XM_036950174.1 mRNA upstream 15456 54713700 ~ 54717607 (+) True iho1
XM_036950169.1 mRNA upstream 55689 54663129 ~ 54677374 (+) False rereb
XM_021568861.2 mRNA downstream 50580 54792943 ~ 54805426 (+) True LOC110494114
LOC110493217 mRNA downstream 75971 54818334 ~ 54824057 (+) True LOC110493217
XM_021568890.2 mRNA downstream 83177 54825540 ~ 54865783 (+) False kiaa1328
XM_021568891.2 mRNA downstream 83177 54825540 ~ 54865783 (+) False kiaa1328
XM_021568892.2 mRNA downstream 83177 54825540 ~ 54865783 (+) False kiaa1328
TU1674965 other upstream 258591 54471705 ~ 54474472 (+) False LOC110494110
TU1674964 other upstream 259191 54471945 ~ 54473872 (+) True LOC110494110
TU1674872 other upstream 468447 54256381 ~ 54264616 (+) True LOC110494100
TU1674769 other upstream 543446 54174014 ~ 54189617 (+) True G1464092
TU1670644 other upstream 3642174 51080132 ~ 51090889 (+) False G1460249
TU1676946 other downstream 1254285 55996648 ~ 55998174 (+) False G1466124
TU1676956 other downstream 1273214 56015577 ~ 56016613 (+) False G1466131
TU1676957 other downstream 1273214 56015577 ~ 56016613 (+) True G1466131
TU1676992 other downstream 1345815 56088178 ~ 56127481 (+) True LOC110494143
TU1677057 other downstream 1476879 56219242 ~ 56220946 (+) True G1466224

Expression Profile