RNA id: XM_021568861.2


Basic Information

Item Value
RNA id XM_021568861.2
length 6030
RNA type mRNA
GC content 0.49
exon number 41
gene id LOC110494114
representative True

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 54792943 ~ 54805426 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTTGGACTGACTGAAGGCCACCCAGCAAAGTATCGACATCTTACCAACTTGGTCCCAGCAACATCCTACGAACTTGGGCAAAAAAAAGAGAGGGTAATTATGAGCACGGACGCAGAGATGGCGGCATTTGGCCCGGCGGCCATCTACCTCCGAaagccggagagagagaggattgcagcCCAGGCCACTCCCTTTGATGCCAAAACAGCTTTCTTTGTGGTTGAGCCCAAAGAGATGTACCTCAAAGGAGTTCTCCAGAGTAGAGAGGGTGGAAAAGCCACTGTCAAAACACTGTGTAACAAAGTTCTCACTGTGAAGGAGGATGATATCCACCCCATGAACCCTCCAAAGTACGATAAAATTGAGGACATGGCCATGATGACCCACCTCAATGAGGCCACGGTGTTGTATAACCTCAAAGAGCGTTACGCAGCATGGATGATCTACACCTACTCTGGGCTGTTCTGCGTCACTGTGAACCCCTACAAGTGGCTCCCAGTGTACGACTCTGTAGTTGTGAATGCTTACAGAGGCAAAAAGAGAATTGAGGCCCCACCCCACATCTTCTCTATCTCTGATAATGCCTATCAGTTCATGCTCACTGaccatgagaaccaGTCAATTCTGATCACTGGAGAATCTGGTGCAGGAAAGActgtgaacaccaaacgtgtcaTCCAGTACTTTGCGACAATCGCAGTGGCTGGGGGAAAGAAGGAACAAACAGCGGCTGCTGCTTCTgggaaaataaagGGGTCGTTGGAGGATCAAATCATTGCAGCCAACCCCCTACTGGAGGCTTATGGTAATGCCAAGACCGTGAGAAATGACAACTCCTCACGCTTTGGTAAGTTCATCAGAATCCATTTTGGAACAACTGGAAAGTTGGCCTCTGCTGATATTGAAACATATCTGCTGGAGAAGTCTAGAGTGACATTCCAGCTGTCTGCTGAGAGAAGCTACCACATCTTCTATCAGCTCATGACTGGACACCAGCCACAATTGCTGGAGGCACTTCTGATCACCACCAACCCCTATGACTATCCCATAATCAGTCACGGTGAAATCGCTGTCAAGAGTATTGATGATACAGAAGAGTTCATCGCCACCGATACGGCCATTGACATTTTAGGCTTCACTGCTGAGGAGAAGATTGGCATCTACAAGCTGACTGGTTCTGTGATGCATCATGGGGCAATGAAGTTCAAGCAGAAGCAGCGTGAGGAGCAGGCTGAGCCTGATGGCACTGAGGAGGCTGATAAAATCTCCTACCTCATGGGCCTGAACTCCGCTGACTTGCTCAAAGCTCTGTGCTACCCCAGAGTGAAGGTCGGGAATGAGATGGTGACCAAGGGGCAGACTGTACCACAGGTGAACAATTCAACTATGGCCCTCTGTAAATCAGTCTATGAGAAAATGTTCTTGTGGATGGTCGTCCGTATCAATGAGATGTTAGACACAAAGCAGGCCAGACAATTCTTCATTGGTGTGCTGGACATCGCTGGATTTGAAATCTTTGATTACAACAGCTTGGAGCAactttgcatcaacttcaccaATGAGAAACTACAACAGTtcttcaaccaccacatgtttgTACTGGAGCAAGAGGAGTACAAGAAAGAGGGAATTGAATGGGAGTTCATTGACTTTGGGATGGACTTGGCTGCCTGCATTGAGCTTATTGAGAAGCCAATGGGCATCTTCTCCATCCTTGAAGAGGAGTGCATGTTCCCCAAGGCTTCAGACACTACCTTCAAGAGCAAGCTGTATGACCAGCATATTGGTAAAACCAAAGCGTTTGAGAAGCCTAAACCTGGGAAAGGCAAGGCTGAGGCCCACTTTGCCCTGGTGCACTATGCCGGTACTGTGGACTACAATGTCACAGGCTGGCTGGACAAGAACAAGGACCCCCTGAATGACTCCGTTGTGCAACTGTACCAGAAGTCCTCAGTCAAACTGTTGGCTATGCTGTATGTAGGAGCAGCAGCTTCACAAGCAGACGATGcagcaagaggaggaggaggcaagaAGAAGAAGGGTGGTTCCTTCCAGACTGTGTCTGCTCTGTTCAGGGAGAATTTGGGCAAGCTGATGACCAACTTGAGGAGTACCCATCCTCACTTTGTGCGCTGTTTGATTCCCAATGAATCAAAGACACCAGGTCTGATGGAGAACTTCCTGGTCATCCACCAGCTGAGGTGTAATGGTGTACTGGAAGGTATAAGAATCTGCAGAAAGGGCTTCCCCAGCAGAATCCAATATGGTGACTTTAAGCAGAGATACAAAGTATTGAATGCAAGTGTCATCCCTGATGGACAATTTATTGACAACAAGAAGGCTTCAGAGAAGCTCCTGGGATCAATAGATGTGGACAAGAGTCAGTACAAGTTTGGGCACACCAAGGTGTTCTTCAAAGCTGGTCTGTTGGGTACTCTGGAGGAGATGCGAGATGAGAAACTGGTTACTCTGGTGACCATGACTCAGGCCCTGTGCAGAGGTTACGTCATGAGGAAAGAGTTTGTCAAGATGATGGCGAGACGAGAAGCAATTTACTCCATCCAATACAACATCCGCTCATTTATGAACGTGAAACACTGGCCATGGATGAAGCTGTACTTCAAGATCAAGCCTCTTTTAAAATCAGCAGAAACTGAAAAAGAGATGGCTGCAATGAAGGAAAACTTTGAGAAAATGAAGGAGGATCTGGCCAAGGCGTTGGCCAAGATAAAAGGGCTTGAGGAGAAGATAGTTTCTCTGTTGCAGGAAAATAATGATCTGCAGCTACAGATAGCAGCGGAAGAGAATACTCTCTGTGATACTGAGGAAAGGTGTGAGGGACTCATCAAGAGTAAGATCCAGATGGAAGCCAAACTCAAAGAGACATTTGAGCggctggaggatgaggaggagctcAATGCTGAACTGACTGCCAAGAAAAGGAAACTGGAGGACGAGTGCTCTGAGCTAAAGAAAGACATTGATGACTTGGAGCTCACCTTGGCCAAAGTGGAAAAGGAGAAACATGCCACTGAAAATAAGGTTAAAAACCTGACAGAGGAGATGTCTTCTCAAGATGAGAGCCTTATCAAGTTGACGAAGGAGAAGAAAGCCCTCCAAGAGGCGCACCAGCAAGTCCTTGATGATCTCCAGGCAGAGGAAGACAAAGTCAACAATCTGACCAAAGCCAAGACCAAGCTTGAACAGCAAGTTGATGATTTGGAGGGTTCCCTTGAGCAAGAAAAGAAGGTCCGCATGGACCTTGAGAGAGCCAAGAGGAAGCTTGAAGGAGATCTGAAACTGGCCCTGGAGTCCTTGATGGACCTGGAGAATGACAAGCAGCAGTCTGATGAGAAGATCAAGAAGAAGGACTTTGAGACAAGCCAACTTCTCAGCAAAATTGAAGATGAACAGGCATTGGGTGCTCAGCTTCAGAAGAAAATCAAAGAACTCCAGGCCCGTATTGAAGAGCTGGAAGAGGAGATTGAGGCTGAACGTGCTGCACGGGCGAAGGTTGAGAAGCAGAGGTCTGATCTCTCCAGGGAACTTGAGGAGATCAGTGAAAGGCTTGAAGAAGCTGGAGGTGCAACATCTGTCCAGATTGAGATGAGCAAGAAGCGTGAGGCTGAGTTCCAGAAGCTGCGTCGTGATCTTGAAGAGTCCACCCTGCAGCATGAGGCCACGGCTGCTGCACTCCGTAGGAAGCAGGCCGACACTGTGGCAGAACTGGGAGAACAAATAGACAACCTCCAGCGTGTCAAGCagaagctggagaaggagaagagtgAATTCAAAATGGAGAGTGATGACCTCTCCAGCAACATGGAAGCTATCGCCAAGGCAAAGGGTAATCTAGAGAAAATGTGCCGAAGCCTTGAGGATCAACTGAGTGAATTGAAGACAAAGAATGATGAGCATGTCCGCCAACTTAATGACATAAATGTTCAGAGAGCAAGGCTTCTGACTGAGAATGGTGAACTTGGTCGTCAGATGGAGGAGAAAGAATCTCTTGTTTCCCAGTTGACCAGGGCCAAGCAGACTTTCACACAGCAGATTGAGGATCTCAAAAGGCAGATTGAAGAGGAAGTGAAGGCCAAAAATGCCCTAGCCCATGGTCTGCAGTCAGCCCGCCATGACTGTGATCTGCTTCGGGAGCAGTATGAGGAAGAGCAGGAGGCCAAGGCTGAACTGCAGCGGGCATTGTCCAAGGCCAACAGTGAGGTGGCTCAGTGGAGATCCAGATATGAAACTGATGCCATTCAGCGCACTGAGGAGCTTGAGGATGCCAAGAAAAAGCTTACCCAGCGCCTGCAAGATGCACAGGAGGCTGTTGAAGCAACAAACGCCAAGTGTGCTTCTCTGGAGAAGACCAAGCAGAGACTCCTGGGTGAAGTGGAGGATCTCATGATTGATGTGGAGCGAGCTAATGCTTCAGCTGCCCAGCTTGACAAGAAGCAGAGGAACTTTGACAAGGTTCTGACCGAGTGGAAGCAGAAGTATGAGGAGGGCCAGGCAGAGCTAGAGGGGTCTCTGAAAGAGGCCCGCTCTCTCAGCACCGAGCTGTTCAAGATGAAGAACTCCTATGAAGAATGTTTGGACCACCTGGAGACACTGAAGAGGGAGAACAAGAACCTGCAACATGAGATCTCTGACCTGACTGAACTGGTCAGTGAGTCTGGAAAGAGCATCCATGAGCTGGATAAGGCAAAGAAGACAGTAGAGAATGAGAAGGCAGAAATCCAGGCTGCGCTAGAGGAAGCAGAGGGCACACTGGAACATGAGGAATCCAAGATTCTTCGTATACAGCTAGAGCTCAACCAGATCAAAGGTGAAGTTGACAGGAGGCTGGCAGAGAAGGATGAGGAGACAGAGCAAATCAAAAGGAACAGCCAGAGGATGATGGACTCCATGCAGAGCACTCTGGACTCTGAGATCAGGAGCAGGAATGATGCCATGAGAGTcaagaagaagatggagggagacctCAATGAGATGGAGATTCAGCTGAGCCATGCCAACCGCCAGGCTGCTGAAGCCCAGAAACAGCTGAGGAACGTCCAGGGAGCACTCAAGGATGCCCAACTGCAACTTGATGACGCCATCCGCGTCGCAGATGACATGAAGGAGCAAGTAGCCATGGTGGAGCGCAGGAATAACCTGATGATGGCTGAAATTGAAGAACTGAGGGCTGCcctggagcagacagagagaggccgcAAAGTGGCCGAACAGGAGCTGGTTGATGCCAGTGAGCGTGTTGGACTGCTGCACTCTCAGAATACCAGCCTCATCAACACTAAGAAGAAGCTGGAGGTTGACCTTAATCAGGTCCAAGGTGAAATGGAAGACACTGTCCAGGAGGCAAGAAACGCAGAAGAGAAGGCCAAGAAGGCTATTACTGATGCTGCCATGATGGCagaggagctgaagaaggagcaggACACCAGCTCTCACCTGGAGAGGATGAAGAAAAACCTGGAGGTCACAGTGAAGGACCTGCAGCACCGTCTGGATGAGGCTGAGAATCTGGCCATGAAGGGTGGAAAGAAGCAACTCCAGAAACTGGAGGCTAGGGTCCGTGACCTGGAGAGTGAAGTTGATGCTGAACAGAAACGTGGAGCTGAAGCTATTAAAGGTGTTCGTAAATATGAGAGGAGAGTCAAGGAGCtcacctaccagACCGAAGAGGACAATAAAAATGTGAGCAGGCTGCAAGATCTGGTGGACAGGCTTCAGTTAAAAATGAAGGCCTACAAGAGAGCGGCTGAGGATGCTGAGGAGCAATCCAACATTCACCTGTCCAGGTACAGGAAGGTGCAGCATGAGCTGGAGGAAGCTCAAGAGCGTGCCGACATCTCTGAGTCCCAGGTCAACAAGTTGAGAGCCAAGAGCCGTGAAATTGGTAGCAAGGGGAATGTGGCTGAAGAGTGAGGGACGAAGTCCAGATGAGACACATTATCAACAGGTCATACAATATGATTTTTGGTAAAAATGCTCATGAATCAAAAATAAATCTGCAAATCATATCCA

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016459 myosin complex cellular_component
GO:0005524 ATP binding molecular_function
GO:0003774 motor activity molecular_function
GO:0003779 actin binding molecular_function

KEGG:

id description
K24220 MYH1s; myosin heavy chain 1/2/3/4/8/13/7B/15

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1675407 lncRNA upstream 85607 54706970 ~ 54707336 (+) True G1464668
TU1675394 lncRNA upstream 97951 54691178 ~ 54694992 (+) True G1464659
TU1675373 lncRNA upstream 159406 54633094 ~ 54633537 (+) True G1464641
TU1675347 lncRNA upstream 165528 54624324 ~ 54627415 (+) True G1464616
TU1675346 lncRNA upstream 168735 54622806 ~ 54624208 (+) True G1464615
TU1675902 lncRNA downstream 183613 54989039 ~ 54989364 (+) True G1465118
TU1675904 lncRNA downstream 184499 54989925 ~ 54990146 (+) True G1465120
TU1675946 lncRNA downstream 211411 55016837 ~ 55017440 (+) True G1465162
TU1675960 lncRNA downstream 222201 55027627 ~ 55027914 (+) True G1465176
TU1676008 lncRNA downstream 257325 55062751 ~ 55062966 (+) True G1465224
XM_036950171.1 mRNA upstream 50580 54733063 ~ 54742363 (+) False slc26a6l
XM_036950172.1 mRNA upstream 50580 54733063 ~ 54742363 (+) True slc26a6l
XM_021568879.2 mRNA upstream 75336 54713511 ~ 54717607 (+) False iho1
XM_021568880.2 mRNA upstream 75336 54713512 ~ 54717607 (+) False iho1
XM_021568878.2 mRNA upstream 75336 54713700 ~ 54717607 (+) False iho1
LOC110493217 mRNA downstream 12908 54818334 ~ 54824057 (+) True LOC110493217
XM_021568890.2 mRNA downstream 20114 54825540 ~ 54865783 (+) False kiaa1328
XM_021568891.2 mRNA downstream 20114 54825540 ~ 54865783 (+) False kiaa1328
XM_021568892.2 mRNA downstream 20114 54825540 ~ 54865783 (+) False kiaa1328
XM_036950179.1 mRNA downstream 20114 54825540 ~ 54865783 (+) False kiaa1328
TU1674965 other upstream 318471 54471705 ~ 54474472 (+) False LOC110494110
TU1674964 other upstream 319071 54471945 ~ 54473872 (+) True LOC110494110
TU1674872 other upstream 528327 54256381 ~ 54264616 (+) True LOC110494100
TU1674769 other upstream 603326 54174014 ~ 54189617 (+) True G1464092
TU1670644 other upstream 3702054 51080132 ~ 51090889 (+) False G1460249
TU1676946 other downstream 1191222 55996648 ~ 55998174 (+) False G1466124
TU1676956 other downstream 1210151 56015577 ~ 56016613 (+) False G1466131
TU1676957 other downstream 1210151 56015577 ~ 56016613 (+) True G1466131
TU1676992 other downstream 1282752 56088178 ~ 56127481 (+) True LOC110494143
TU1677057 other downstream 1413816 56219242 ~ 56220946 (+) True G1466224

Expression Profile