RNA id: XM_036950210.1


Basic Information

Item Value
RNA id XM_036950210.1
length 4280
RNA type mRNA
GC content 0.54
exon number 9
gene id LOC110493221
representative False

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 55729786 ~ 55784821 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctgtctcagtctctcattACCAGTCTCTGGTGCTAGTTAAGGGTAGCAGTTCCTGCCTGTCAGCCAGTGTGTTTGGGTTGCGTTCTTCTTCCCAGTCTTCCTCTGCATTCCTGTCTTCGTCCTTCCGGGGTGTGTATGTGCTAGTCTTTATCGCCTCAGATGCTTTGCTGGCGGACTTGGAGTCGACAACCTCCCACATCTCCAAGCGGCCGGTGTTTCTGCCGGACGAGACGCCCTACTCTTTCCCCACGGGAGGACCGGCCTCGTCCCCTGTACCCCAACATCCCTCTACTGAGGCCCTGAACGGAACCGCGCTCGACCCCCTAGAATCCACCCGTTCATCCACACAGTCCTACAGCAGTAGCTCCCCCCCCTTACCCCAAAGTGAAGACGACCACGTCTACAGCTTCCCCAACAAGCAAAAGAGTGCAGAGGCTGCCATGAGCTCCTTCCTGGGCAGCAACTTGTCGGAGTTGGACCGGCTGCTTCTGGAGCTCAACGCTGTGCAACACAACACGCCCTCCTTCCCGACTGAGGAGGAGACagccccacccctcccctctaGCAGCACCACCCACTATGTGCAGGAGAACGGGGTTTCGGGGGCCGGCAAGGTGCCTCCCCCCACCATGGAGAAGCCCAAGCGCAGCGTGGCCACCAGGGTCATTGAAGACGTGCGCCCCAGCGTTGAGAGCCTTCTGGACGAGCTAGAAAGTTCTGTGCCCTCCCCCATTCCCATCCCCTTGGTGGAGTTTacggagggggaggaggagacacCCTCCCAGCTGCAGGCCAGAATCTCTGCCTCCTCCGCCACGCGGGAGCTCGACGAGCTCATGGCCTCGCTGTCCGACTTCAAAGTCCAGAGCAATTCTGGTTCTCAGTTGTCTGTCAATATGAATACCCTCCTGATCAGTCAAGGATCAGAACCCTCCTCCTTGGAGACAAAGTCACCTGCTTCCCCAGTAGTTGTAACCAGGGACCCAACTGGGCCTGGTGATCTGCAGCTGGAGCCCCCCAGTGACACGTCCCCCTCCTGTAACCCTGTTCCTTTAGAACTCCACATAGATGAAGATGCCTGCTCTGGCCcgccctcctccacccccctctcagCTGCTTCAGCCTCCTCCGTTTTGTTGGCCTCGTCCCAGAGCCTCCAGTACACCCAGATTCACACACAGCTGGGAGGAGTAACTGATCCCAGCGTGAGAACTACGCTGACCTCCCACATGGAGTCCCTCACTGTGGTCTCTAACACCACAAGCCACACTTTGCCAAAGACCCCCTATCCTTCTGTTGCCCCCGTTGTAAAGTGCAACAGTCCTGCAGTGGATAATAAGACCACCAAGACGCCTAGTCCAGTAACTGTTGCCAAGACCCCTAGTCTGGTACCTTTTGCCAAGACCCTTAGTCCCATGACTCTTGTCAAGACCCATAGTCCTATAACTGCTGCCAAGACTCTTGGTCCAGTTATGGTTGCTAAGAGCCCCAGTCCTGTTCCGATTCCTAAAAGCCTCAGTCCTCTTCCAGTTGCCAAGAGCCCCCGTCCAGTTCTGGTTGCTAAGAGCCCTGTTTTTGTTAGTGTTGCTAAGAGTCCCACTCCTAAAACGATCACCCTTCCTCAGTCACCCTCCATTGATCCATCTTCCTCACTGAAGGAGAAGCATCCAGAAACACCTGCTGCTCAGCTAGCAGAGCCCCCAGCTGCATGTCCTGACTTGGGGATAACATGGCCATGTCGGGAGCCCTTGCTGGAGGACACCCTTGACAGATTGCTGTCCTTCGACTTTACCCTGCCAGAGGGAGAAGTGAAGCATGCCAAGGAGACCCATCAGGACAAAGAGGAGCTTTATGCCATGGCAAGAGACAAGGAAAGGACTTGGGAGGACAAGGAAAGTATTAACCCAAAGCACAGCACGTCCCTGGACGGGCGCGAGGGGACGATGACCCCCCTTAACAAGGCCAGCTGGATGGATGACTGTTTGACCCCCTCGACGTGTCCAGGAACCCCCGAGACCACCCTGGACCTGCCCCTGAACCAGCCTTCGGCCGTGGAGAGGCTGTCCACCTCGGGCCAACTCAAGTCGGTTATCCGCCGCACCAAAGAGACGCCCAACGTGCACCCCATGTACCGAGACGGGCATGTGTTAAGGCGTAAACTGGGTCCTGTCATCTTCACCAAGAGCAGTTCCCAGGACTGTCTCATCGCAGAGCTGCAGGGCAAGCTGGGAATCGAACGCGCCGTTGAGCGCCGACGCAAGAAGCAGTCAGACGACTGGCTCACTGAGGGGGTCATCGTCATGAACAACCCGCAGCGCATGCGGGAAGACAGGGCCTCGCCGGTGGTGGACAAGATCGTCATTCCTCCTGACTCGCCTGTCCCTCAGAGAAAAGTCATCCCCCCTCCGCAGTCCCCCCCGGCGCCCAAAAAGCAAACCCCTGTCAAGCAGACTCCTCCGCCCCTgcctcctcccccacccccctcgcCCCCTCCCAGGGTGCCCACCCCTCCCCCGCCATGCACCCCTTCCCCCCCACCTGTGGAGCATCAGCCCACCCCTCCCTGGATGCCGACCCCCAGAGAGCCCACCCCTCCATCCAGGAAACCTGCCCCGCCCAAAAACCCCAGCCCCCTGCCCAAGTCTGTCACCCCGCCCCCTCCGCCCAAGGTCTTTGTGTCTGTTGGCTGCCAGACTGAGTATGATCCCATCTTCCCACCAATGGAGGCATGGAACACTCAATCCACCTTGTTCGTTTATCCTTCTGTTTTCTCTATTTCTCGCGTTCTCTCTTTGGCCTAATCTGCCTCTCACCTCTTTCTTTTCTCACTATCACCAAATGTATTCTCTATTTCGTCGTTTGTATTGAGTCGTCTGTCTGAGTGTCAAAACCAaaactcttctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttgagaaaaCAGATGTATTTTGGGCCCTATCTCTAGCCACTTCTCCACCAAGAGTCTAGGAGAGGGGTTGTGATAAGGAAGGAGCTCTTTAAAGAGGTGTGAAATCCATTCTGTAGAGATGAAAGAGTATGACATCCAGGCTGGCGAGTGAACCGTCTCGGTTTTTGGAGAATGGCGCCCAGTGGCGCCAACTTGGGCCATGTCGTTCCTTGAAATCAGTATCGGGTGGTTGGTGGGGAACAGACATCATGGCTCTCTCCTTGATATTACAGCCACACTGTCCTGATACCTGTCATGACGCTGGAATGGTTCCCACCTCCCAGAGGACTTGCCTCCACCATAGTCACTTCAGACCTAACTTTTGACTGTTTAACTTGCCAAGCCCTTTTGACCAAGCCCAAATCTGAACAGGTTGAAATAACTTGACTCTAATTTTCTCTCTACCCCTTTCTCTTTAACAAACACATCCAGGTCCAAGCCAAGTTGGTATTTGATTTTACTCCAGATGAAAGGGTGGTTGTTTAGTGAGGGTTGCCTTTCGTTGGTGAAATTTGCCTGTACGTGACTGttagtccctgtgtgtgtgtgcgtttatgtgtgtgtgtgtgtgtgtgcatttatgtgcgtgtgtgtgtgcgtttatgtgtgtgtttatgtgtgtgtgtgcacgtttttTGTAAGCAGTAGGCCCACTGACAGGCTATTTTTTCCCTCTGTGGAATTTGACTGGGTCAGGAAGCTCCAATGACCAAACCATTTGAGAAGTGTAGTTCCCTCCCACCTTGCTTCTGCCCATCAACAACCCACAGACAATCAATAGGCTCTATAGGTAGCTAATAAGCAGCGTTACTCTTGGAGACAGTAGTCAGATTGAAGAGTCACAGGGTTGGACTGCAGTGCTTTATGTAATGTCAGCTTTTATGCGATGAGCCGAACATGTTCTTTCTAGCCTGGCATGCATGCCAGCAGCATTCTCCATCTCAGCCATTAAAAAGACTGATTTCTGTGGCGGGTCACATAAGCCCAGGGAGAGTGTGTTCTGTTTCGTCAAGAATAATTACTGTTGTGTCTATGAAGACTCAGTTCAATTCAAAAGACTTGATCCCAGGGGAGCAATTACGTTCAGATGTAATCAGCAGAGTTGTTGAAGAGAGACTCTTCTACGCTTTAATGGGGTTTTCTGTGAGTTGAGCAGAACATGAGTTGGGAAGGGATCTCTATTTGTGGAACTGTGTTGTTTGCGTGTGTACGTTTCTAtatgcgtgtgtgtttctgtgcgtctgtttctttctctgacatgtctgtctgtgtgtgacccAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1676734 lncRNA upstream 144211 55606145 ~ 55606389 (+) True G1465932
TU1676668 lncRNA upstream 200346 55549921 ~ 55550254 (+) True G1465866
TU1676634 lncRNA upstream 228460 55521903 ~ 55522140 (+) True G1465833
TU1676567 lncRNA upstream 273015 55477292 ~ 55477585 (+) True G1465770
TU1676026 lncRNA upstream 673873 55076458 ~ 55076727 (+) True G1465242
TU1676826 lncRNA downstream 46955 55817061 ~ 55819025 (+) False LOC110494141
TU1676827 lncRNA downstream 46955 55817061 ~ 55819195 (+) False LOC110494141
TU1676828 lncRNA downstream 46955 55817061 ~ 55818329 (+) False LOC110494141
TU1676825 lncRNA downstream 47042 55817148 ~ 55818329 (+) True LOC110494141
TU1676837 lncRNA downstream 54944 55825050 ~ 55828276 (+) True LOC118940477
XM_021568911.2 mRNA upstream 25992 55721363 ~ 55724608 (+) True LOC110494139
XM_021568858.2 mRNA upstream 33086 55665844 ~ 55717514 (+) False cita
XM_021568901.2 mRNA downstream 14921 55785027 ~ 55789929 (+) False LOC110494133
XM_036950214.1 mRNA downstream 15041 55785147 ~ 55789929 (+) True LOC110494133
XR_005037248.1 mRNA downstream 17072 55787178 ~ 55787306 (+) True LOC118940662
XR_005037245.1 mRNA downstream 18062 55788168 ~ 55788316 (+) True LOC118940659
XR_005037249.1 mRNA downstream 18804 55788910 ~ 55789038 (+) True LOC118940663
TU1674965 other upstream 1276128 54471705 ~ 54474472 (+) False LOC110494110
TU1674964 other upstream 1276728 54471945 ~ 54473872 (+) True LOC110494110
TU1674872 other upstream 1485984 54256381 ~ 54264616 (+) True LOC110494100
TU1674769 other upstream 1560983 54174014 ~ 54189617 (+) True G1464092
TU1670644 other upstream 4659711 51080132 ~ 51090889 (+) False G1460249
TU1676946 other downstream 226542 55996648 ~ 55998174 (+) False G1466124
TU1676956 other downstream 245471 56015577 ~ 56016613 (+) False G1466131
TU1676957 other downstream 245471 56015577 ~ 56016613 (+) True G1466131
TU1676992 other downstream 318072 56088178 ~ 56127481 (+) True LOC110494143
TU1677057 other downstream 449136 56219242 ~ 56220946 (+) True G1466224

Expression Profile