RNA id: TCONS_00046323


Basic Information

Item Value
RNA id TCONS_00046323
length 5152
RNA type mRNA
GC content 0.50
exon number 36
gene id XLOC_023422
representative False

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 21371279 ~ 21512425 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AAAAATAATTCCACAATTATATGATCAGTCATTATGCGTCTTTCAGTGACATattctttaacatttatttattccctCATCCACATGTGTTTACCCCTGGAAGCAGTCTATTTCAAATCTATCTATAATACTGCACTTAATAACTTACTAACCTCAATTTGACCTAGCAAAACAAACCCTTTTGAGAAACAGTAAGTCTCTTCCCTCAGGTGAAATGTCCATCCTGGAAACGAGGAGGAGCAAATGAACAGGAAGCGAATCCTTGCTTGTCAGTGCATGTTCAGTACATTTCGATCCCTAATTGTGaatacaaacaaacagaaagacaaacagaccgacagacagaaagacagctGTGGCCCTCGAGCAagtgcctgtgcctttaaatggaAGGCTTTTGTGTGGGACTGCGGGGAACGCGTTAGTTAGACGCGGGCAGAGAAAGCGCGGTGTTTGGAGGGAAACCAGCCGTCTTCTGTTACTGCAAAGACACCTCGTAGTGGAGCTTTATGAATGTCCCGAGGCTGACAAATGACCCGGAGCACGCGGGTTTGAGGCTCGTCGTCTGACTGGAATGGGAGAAGTGACGAGCGCCGTCCATCTCTCCACGCCCGCTTTCGATCATGCAGCAGCTGGGACCCGCGTGCTCGGCCACCGGCTACCGCAAGGCAGAGGATGAGATGTCCGGGACCACATCACAGGCGGACCCGGTAGATGCCACAGCGCGGACCGTGCTGCTCAACAGAGCCCAGACCACCAAATATTGTGACAACCATGTCAGCACGGCTAAATACGGGATCCTTACTTTCCTGCCTCGGTTCCTGTATGAGCAGATCAGGCGAGCAGCTAATGCTTTTTTCCTTTTCATCGCTCTTATGCAGCAAATCCCTGATGTCTCTCCGACGGGTCGCTACACGACTCTGGTGCCTCTTATCTTCATTCTGACAGTAGCAGGAATCAAGGAGATCATTGAGGATTATAAAAGGCATAAAGCAGACAACACGGTGAACAAGAAGAAGACAACAGTTCTGCGTAACGGAGCATGGCAGACCATCATATGGAAGCAGGTGGCAGTGGGAGACATAGTCAAGGTGACCAATGGGCAGCACCTCCCGGCTGACATGGTCATAGTGTCCTCCAGTGAGCCTCAGGCAATGTGTTACACTGAAACGTCCAACTTGGATGGAGAGACCAACTTAAAGATCAGACAGGGTCTCTCTCTGACAGCTAGTTTTCAGTCTTTGGAGGATCTGATAGCACTGTCAGGTCGTCTTGAATGTGAAGGTCCAAACAGACACTTGTACGACTTCACTGGAACACTGCGCTTAGACAACCACAACCCGGCTCCTCTTGGGCCTGACCAGGTGCTGTTACGAGGTGCTCAGCTCAGGAACACGCAGTGGGTTGTGGGAATTGTAGTTTACACTGGACATGATTCAAAACTTATGCAGAATTCCACTAAAGCTCCACTGAAGCGCTCTAATGTAGAGCGGGTAACAAACATGCAGATCCTGGTTCTGTTCGGGATTCTGCTGGTCATGGCGCTGGTCAGCTCTATTGGCGCCGCAATATggaacaaacagcacacagatgaAGCCTGCTGGTACCTTTCCAGAGCAGGTGACATCTCCCTCAACTTTGCCTACAATCTATTGACCTTCATCATCCTCTATAATAACCTGATCCCCATCAGCCTTCTGGTCACGCTAGAAGTGGTCAAATTCACACAGGCTCTCTTCATCAACTGGGATGTTGAGATGTATTACGCTGAGACCGACACTCCCGCTATGGCTCGAACGTCCAATCTGAATGAAGAACTCGGCCAAGTAAAATATCTATTTTCAGATAAAACCGGCACTCTCACCTGCAACGTCATGCACTTTAAGAAGTGCACGATAGCTGGAATTACATACGGGCACTTCCCAGACCTAGACTGCGATCGATCCATGGAGGACTTCAGTCATCTTCCCTCTACAAGTCATAATTCTACTGAGTTTGATGATCCTGCTCTTATCCAGAACATTGAGAAGAACCATccCACATCGCCACAGATTTGTGAGTTTTTGACCATGATGGCTGTTTGTCATACTGTTGTTCCTGAGAGAGAAGATAACCAAATTATCTACCAAGCTTCCTCACCAGATGAAGGAGCGCTGGTAAAAGGTGCCAAAAGTCTGGGCTTTGTTTTTACTGCACGAACGCCACATTCAGTCATCATAGAGGcgAGAGGAAAAGAGCAGACATATGAGCTTCTTAATGTACTGGAGTTTTCCAGcaatcGCAAGCGGATGTCAGTGATTGTCAGAACACCTACAGGCAATCTTCGACTTTATTGCAAGGGAGCGGACAATGTGATTTTTGAGCGTCTAAATGTGACGTCACAGTATAAGGAGTTGACCGTGGCTCATCTGGAGCAGTTTGCCACAGAAGGGCTGAGGACACTGTGTTTTGCGTATGTGGATCTCGAGGAGGGGGCCTATCTGGAATGGCTGAAGGAATACAATCGTATTAGCACTGTGTTAAAGGACCGAGCACAGAAACTGGAGGAGTGTTACGAACTCATAGAGAAGAACCTCCTGCTATTGGGTGCCACAGCGATTGAAGACCGGCTGCAAGCAGGAGTCCCAGAAACCATTGCAACACTCATGAGAGCCGACATCAAGATCTGGGTTCTGACCGGAGACAAGCAGGAGACGGCCATCAATATTGGTTACTCCTGCAGGCTGGTTTCACATGGCATGTCCCTCATCATCGTCAATGAAGATTCCCTGGATGCAACCAGGGCCACGCTGACGGCTCACTGCTCCTCTCTGGGTGACTCTCTGAGGAAGGAGAACGAGTTGGCGCTCATCATAGACGGACAGACGCTCAAATATGCCCTCTCTTTTGAAGTACGGCAGGCTTTTCTGGACCTTGCGCTGTCCTGTAAGGCCGTCATCTGCTGCAGAGTTTCACCATTACAGAAGTCGGAGATTGTGGACATGGTGAAAAAGCATGTAAAGGCCATAACGCTGGCTATCGGAGATGGAGCCAACGATGTGGGCATGATACAAACAGCACACGTGGGAGTGGGCATCAGTGGGAATGAAGGCATGCAGGCCACCAACTCATCTGACTACTCCATAGCTCAGTTCTCATACCTGGAGAAGCTTTTACTGGTTCATGGGGCCTGGAGTTACAACCGCGTCACTAAATGTATCCTGTACTGTTTCTATAAGAACGTGGTCCTTTACATTATAGAGCTTTGGTTTGCGTTTGTAAACGGTTTCTCTGGTCAGATCCTGTTTGAACGGTGGTGCATTGGCCTGTACAATGtgATCTTCACCGCTCTCCCTCCTTTCACACTCGGGATCTTTGACCGGCCGTGCAGCCAACAGAACATGATACGTTTCCCTCAGCTCTACCGCATCACGCAAAACGCAGAAGGTTTTAACACCAAGGTCTTTTGGGGTCACTGTATAAATGCTCTCATTCACTCCATTATTCTCTTCTGGTTTCCACTTAAAGCCTTGGAGCACGacaCTCCTTTCGACAACGGCAACAGTGTGGACTACCTGTTTGTGGGGAACATCGTCTACACGTATGTCGTGGTAACTGTATGTCTGAAAGCCGGTATGGAGACCACAGCATGGACAAGGTTTTCTCATCTAGCTGTCTGGGGCAGCATGGTGCTTTGGATGCTGTTTTTTGCCGTCTATTCTGCGATCTGGCCAACTATTCCTATAGCTCCGGATATGTTAGGCCAGAGGAAGACGTACAGTGAGGAAGACCCTGTTGGAGGAGGTGCAGGAGCTGGAGGCACGGGCTGTGGACCCTGGAGCAGCCGTTCTCAGAGATGCCAGCGGCCGCAGTCTGAACGAGCGTGCCCACCTGCTGACACGGGTCTTCAGAAAAACGCCTTCCAGCGTGGGACGCTCCAACTCGGTGCAGCAGACCGTGTCACATGGATATGCGTTCTCACAGGAGGAGCATGGTGTGGTCTCTCAGTCGCAGGTCGTCCGCTCCTACGACACTACCCGCCAGCGGCCTAGTCTGTAGCTGAGGCTCTACCGCAACAGCTGCTGGAGACTTTAACCACACACCTGTGCTGGGTGAATCCCGTGCTGAggcctttaagctgaatataaaCTGAACTGGGCACAGCTACCGCAAACACCCGGCCGAGCTACATAACACACCGCCTCCCGATGAGGCCAGAGGGAGCGGATTTACAGGAAAAATACAAAACGCAGGGTTGGGGTGGGCAGGAAAAATACAAAACGCAGGGTTGGGGTGGGCGGGCAAATTCACACACTGAAATGGCCAGTTGAAATGCACTACACATGAGATGAACGGACTGGCAAACGGAGCCAAGTAGCATCCAGAAGTGGAAACCAGAGACAATGGTGTCTGTATAACCATTCGCGAGTCACAAATCTGCTTCATTTGGTTCTATATGGTGTGGGTGCGAGATTGCATCTGCACGCTCATATATATCGAGAAGGATGCACGTATGGCTTCTTTGTTGCACTCGCTCTTCAGGGGGGGCTCATGCTGTCATGCTTCTcggtgtgtctgcatgtgtgtgtttttgttgagTCCCAGCGTCTGCGTCTCCTGAGATCGGAGTTTGGCGTGTCCGTCATCACCACAGCGATGCAGGAGGGGAGGCCACTCAAAACAAACACcaaacacccacccacccacatgTATACACAGATTGGAGGAATGCCCATTGCAGACCTGAGATGAGGGAGGAGTGGCTTGGAGAtgcaggagacacacacacacacacacgcatgcacacacatgcatgcaccgTTACCATCCAGTTAGGCTGCCAAAACACACAGCGATTCCTCTGAGGCAGAACCCCCACCTTGCAGCATGGAGCTTCCCAgcttaccacacacacacaaatacaccttCTTCTCTGTCTCAGCTAATCTTAATGGCGGCCTCTGTATCTTAGAGCTCATGTTCCTccttctgtctttttctttcCAGATCAGCAATCTCCGTGTCTCCTTGTTCTCTTGGTCTAGTTATCCTTTCCTTCGCGCTCTGTTTCATTCGGTGGTTGCTGTGGATCACAGCTGTGGCTTCGCTTTGTCCGCTTTCACTCAACCTGTCAGGTTTCTGGACTGTTTTGTCAAATAAACTGGACTTTTGA

Function

GO:

id name namespace
GO:0015914 phospholipid transport biological_process
GO:0048666 neuron development biological_process
GO:0045332 phospholipid translocation biological_process
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005524 ATP binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0000287 magnesium ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-100209-2 Predicted to enable ATPase-coupled intramembrane lipid transporter activity. Predicted to be involved in neuron development and phospholipid translocation. Predicted to act upstream of or within phospholipid transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Human ortholog(s) of this gene implicated in cerebellar ataxia, mental retardation and dysequlibrium syndrome. Orthologous to human ATP8A2 (ATPase phospholipid transporting 8A2).

Ensembl:

ensembl_id ENSDART00000109848

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00046855 lncRNA downstream 1525 21331016 ~ 21369754 (-) False XLOC_023421
TCONS_00046322 lncRNA downstream 1699 21368211 ~ 21369580 (-) True XLOC_023421
TCONS_00047176 lncRNA downstream 140108 21226533 ~ 21231171 (-) False XLOC_023420
TCONS_00046320 lncRNA downstream 140108 21228869 ~ 21231171 (-) True XLOC_023420
TCONS_00046319 lncRNA downstream 142326 21226533 ~ 21228953 (-) False XLOC_023420
TCONS_00046337 lncRNA upstream 140213 21611602 ~ 21620256 (-) True XLOC_023424
TCONS_00047177 lncRNA upstream 582420 22053809 ~ 22066831 (-) True XLOC_023442
TCONS_00046366 lncRNA upstream 599832 22071221 ~ 22074272 (-) False XLOC_023443
TCONS_00046367 lncRNA upstream 599832 22071221 ~ 22077479 (-) False XLOC_023443
TCONS_00046370 lncRNA upstream 652497 22123886 ~ 22149868 (-) False XLOC_023444
TCONS_00046321 mRNA downstream 27297 21330753 ~ 21343982 (-) False XLOC_023421
TCONS_00046318 mRNA downstream 112334 21206243 ~ 21258945 (-) False XLOC_023420
TCONS_00046317 mRNA downstream 199157 21154120 ~ 21172122 (-) True XLOC_023419
TCONS_00046313 mRNA downstream 221110 21131874 ~ 21150169 (-) False XLOC_023418
TCONS_00046314 mRNA downstream 221179 21132981 ~ 21150100 (-) False XLOC_023418
TCONS_00046331 mRNA upstream 30453 21501842 ~ 21511737 (-) False XLOC_023422
TCONS_00046332 mRNA upstream 32826 21504215 ~ 21507627 (-) True XLOC_023422
TCONS_00046333 mRNA upstream 112685 21584074 ~ 21588914 (-) False XLOC_023423
TCONS_00046334 mRNA upstream 114921 21586310 ~ 21587335 (-) True XLOC_023423
TCONS_00046335 mRNA upstream 128931 21600320 ~ 21620316 (-) False XLOC_023424
TCONS_00046316 other downstream 226979 21139322 ~ 21144300 (-) True XLOC_023418
TCONS_00046297 other downstream 712611 20647475 ~ 20658668 (-) False XLOC_023409
TCONS_00046286 other downstream 839693 20450027 ~ 20531586 (-) False XLOC_023407
TCONS_00046292 other downstream 900189 20470954 ~ 20471090 (-) True XLOC_023407
TCONS_00046277 other downstream 1183849 20187316 ~ 20187430 (-) True XLOC_023401
TCONS_00046357 other upstream 491663 21963052 ~ 21963168 (-) True XLOC_023437
TCONS_00046358 other upstream 492661 21964050 ~ 21968116 (-) False XLOC_023436
TCONS_00046365 other upstream 599832 22071221 ~ 22097763 (-) True XLOC_023443
TCONS_00046371 other upstream 837555 22308944 ~ 22309058 (-) True XLOC_023445
TCONS_00046372 other upstream 900597 22371986 ~ 22372100 (-) True XLOC_023446

Expression Profile

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