RNA id: XM_036950222.1


Basic Information

Item Value
RNA id XM_036950222.1
length 3448
RNA type mRNA
GC content 0.42
exon number 12
gene id LOC110494131
representative True

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 56056291 ~ 56081057 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGGATTCGGGTTTGTAACATACATAGACCAGGCTGGTGTGGATAAAGTTTTGGCACAAAACAGACATGAGCTGGATTCTAAAACATTTTAAACATGTCTGGATGGGTTTGGCAGTTTGAGatTGATCCCAAGGTGGCATTTCCTCGTAGAGCCCAACCCAAGTTGGTGACCAGGACAAAGAAGATCTTTGTGGGAGGCCTCTCAGTGAACACAACCATCGAAGACGTCAAGCAATACTTTGACCAGTTTGGAAAGGTCGATGACGCCATGCTCATGTTCGACAAAACCACCAACAGACACAGAGGTTTTGGCTTTGTGACCTTCGAGAATGAAGACATGGTGGAGAAAGTGTGTGAGATCCATTTCCAcgaaatcaacaacaaaatgGTGGAGTGCAAGAAAGCCCAGCCCaaggaagtgatgtcaccgaCGGGTACAGCTCGAGGTCGTGCCAGGGTGATGCCCTACGGCATGGACGCCTTCATGCTGGGGATCGGCATGCTGGGCTACCCAGGCTTCCAAGCAGCTACGTACGCTAGCCGTGGCTACCCTAGCATCACGCCTGGATACACCTACCAGTTCCCTGAATTCCATTTAGAGAGGACCACCCTTCTGACATCATCCCACCCCTCTGAGCTCACAGGTCAAAGAAGACATCTGAaattgtccctctgtccctcagccATTCCACTGTCAGCCTACGGACCaatggcagcagcagcagcagcggctaTGAGAGgtTCCACCCAGTCACGTAACGCAGGCTACCTGGGCACCAGCAGCCCTGGGCCAATGGCTGATCTGTATGCGGCAGCCAGTCAGGACTCAGCACTCAGCAGCTATCTCAGCGCAGCTAGTCCTGGCCCCAACTCAGGATTCGGCCACAGTCTTGGGGGTCCTCTTATCGCTACTGCCTTCACCAACGGTTACCACTGAGCAGATTTAGCAAATCACCGGGCACGGGAGGAGGTCCCTTCTGCTGACGAGCCAATCAAACTGCTGTGTGCCTACCCATGGCACAATCCGATTGGCGGCCACAGTTCAAACCCCGCACCCCCTGGCTCCCCCTGACTCCACCCACTGACTGAagatcttttattttttttaacttctgTATCCTGTTTTCCTGTACTAATATCACTCCCTCTTCTCAATCCCTTGTTTCTCCTATCCTTTACCTTCACGTAGGTTTATTTAATTAGATTCCAATGCTGTTTCTTTTTTAAAATATCGCTCTGGCAGAAAAATAAGTGAGAAAATAAAGTTTGTGGGTTACGCTCAAGGCAAAcacacagattctgtcagataTGTTTTGCTTATATttgaggatttttttatttaatcgcAATGTTTTGATGTATTGTCTGTTCCGTTGACCTTTAATGTGTTACTgaggtgagatggaggagagaggattaGAGAGCGATGAACTGGTGTGTGGGATGGGGTCTCCTTGTCAAAAGGGGTACCTAACCCATTTAaacagaggaagaacaaaaatGATGTAATTTCCATTTTTAACAAACGTGTCACAGAAAACATGAAAAGAAaactaaaatgtatattttgatagtttttaaaacaaaacatttgtaaTATTGTTATTAATATTGAACacaatgataataatgatgataatcgGGTAGATATTTTCTTCCGTAATTGGTTTTGAaaggaatgtttttttattttcttcctgTAAAATATTGTATATAGATTTTGAGGGGAGGGTGAAGTAGGGGAGGAGGAAGGTTGGtgtaggggaggagggaggggatgttGAACTTTGATCAGCAGGCGGGGTTACTATTAATCGTTTGGCGCCAATTTAACTGGAAGTCTGCTTAACTACTACAACAAATGTGTTGTACAGCGGCAGGTCATTTTCTATTTGAAAGTGGCTATCCCCTCAGCATTTGTTTGGTGTTTAGGCCAACAACATGCATTAGCAGGGTTGAGGACTAGATGATATTTGTAAATAAGACGAAATGATAAGACCCTTTTCATTAGAAATTGGTATCAAAAAGAGAACATGCTTGAATTCTCACACAGTTGAGTCCTTTTCCCTTTCCTTTCATTTAGTTTCTTACTGTGAACATGCCAGTAACTGATTTCTATTGAATTGGACCCCTTAAAGGCACAGTCTTACCAAGTGACATAACCATAGAAATATTGTTATTTGAATGAGGGTTCCTGTTCTAGTCATTTTATTTCTATGGACATGACATCCATGTATCCCTGAGAGATAAGGAAAAACTGAAGTGAGGCCCTGAGGATTTTTAATTGGCTATGTTGAGGGTGCATGGTCGGGGTTAAGGGGGATTGGGTGGGATTTAATACAACTTTTTAAGGGGggaaagtatatatatttttgctctATTTTCCttcattatgttttattttgtttcTTGTTTCTTTCTTGCTGTTCTATGTACGGTCATACGGACCGTAGAAACAAATGAAGGACATATTTAACAAAGCAATTGACTCTTAAAAAACGGTTACATCATGGTTGTATTTGTCTTCTGATGACCTTAGGAGGTGATTGTGTCATTATGTGTGaaggtgtgtttgtttgtgtgtgatgtgtgcGCGCACAATAGTGAGCTGACGTATGGAATTAGCTAGATTCGAAAGTTGACATGACATGCATTTTTTGACTGCCATTTTGGTACTGAAATGTTTGGCTGGTTCCATTTTGGTCTAACACCACGTATCCTATGTGTCCTTTCAGATCTAGGGACTAGGGGCTAGGTAAactgaaatggaatgcagcctcTGTCCCAGTCAGTACAGAAAAGAGTTATACACAGACCAGTAGCtggaatggaggaggagacatAGTGGAATTGTCCCCTTTCTTTTGACAGAGCTATTTCAATGAAAATCAAATGAATTTTGTTGATGTTCCACAAAGTCTTCCACTAAACATGAACAAGAATCTCCCATTTTATACTGGCTAGTACTGCCCTTTTCGAACTGGCTGGGGCACCACACAAAACTACTGCTGGACACGAACACTGTAACTTTCTAACTTTCAAAAAGCAATACGTTgttttttattttaggaatatTAATACTGCTATTAATGGCAATGGGAGTATGGATAATTCCATGGCATTAAGACTTTTTTTAAGAACAAAAAGGAAATTATATTTTTCTCTTGTCCGATTTCGTTCCCGGTGCACAATAATGATTCAGTGATGTTTAAGATGctggtgtttttgtttgtttatgttgacgcTTTCTTCAGGGTCGGAAAAGGGGCAAGGCCTTGGTTGTTAAAGCTCCAAGTTCAAGGCCTTGACCAACACTGTAACTAAACTTTTATTTGGACTGTTCCCCACCCGCTTTATCTTATtgtatttctttttttctttctttcttttctcctcTGGAAATGTCCATTTTAAAATTCCTAATAAATTATTTTAAAGCATTCCACTGA

Function

GO: NA

KEGG:

id description
K14411 MSI; RNA-binding protein Musashi

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1676940 lncRNA upstream 59693 55996860 ~ 55998347 (+) False G1466124
TU1676945 lncRNA upstream 59693 55997116 ~ 55998347 (+) True G1466124
TU1676941 lncRNA upstream 59791 55996860 ~ 55998249 (+) False G1466124
TU1676944 lncRNA upstream 59791 55997116 ~ 55998249 (+) False G1466124
TU1676937 lncRNA upstream 63866 55992417 ~ 55994174 (+) True G1466121
TU1677004 lncRNA downstream 105399 56186456 ~ 56192392 (+) True LOC110494146
TU1677469 lncRNA downstream 197088 56278145 ~ 56278451 (+) True G1466592
TU1677471 lncRNA downstream 198399 56279456 ~ 56279858 (+) True G1466594
TU1677504 lncRNA downstream 240957 56322014 ~ 56322229 (+) True G1466625
TU1677478 lncRNA downstream 243534 56324591 ~ 56329073 (+) True LOC110494150
XM_021568904.2 mRNA upstream 18719 56030123 ~ 56039321 (+) False LOC110494134
XM_021568902.2 mRNA upstream 18719 56030124 ~ 56039321 (+) True LOC110494134
XM_036948421.1 mRNA upstream 111453 55933572 ~ 55946587 (+) True LOC110493222
XR_005037018.1 mRNA upstream 229171 55824599 ~ 55828869 (+) False LOC118940477
XM_021568914.2 mRNA upstream 239714 55811948 ~ 55818326 (+) False LOC110494141
XM_021568915.2 mRNA downstream 7092 56088149 ~ 56094557 (+) False LOC110494143
XM_021568916.2 mRNA downstream 27325 56108382 ~ 56112085 (+) True LOC110494144
XM_021568920.2 mRNA downstream 89552 56170609 ~ 56192396 (+) False LOC110494146
XM_021568922.2 mRNA downstream 89556 56170613 ~ 56192396 (+) False LOC110494146
XM_021568919.2 mRNA downstream 89560 56170617 ~ 56192396 (+) False LOC110494146
TU1676956 other upstream 41427 56015577 ~ 56016613 (+) False G1466131
TU1676957 other upstream 41427 56015577 ~ 56016613 (+) True G1466131
TU1676946 other upstream 59866 55996648 ~ 55998174 (+) False G1466124
TU1674965 other upstream 1583568 54471705 ~ 54474472 (+) False LOC110494110
TU1676992 other downstream 7121 56088178 ~ 56127481 (+) True LOC110494143
TU1677057 other downstream 138185 56219242 ~ 56220946 (+) True G1466224
TU1677617 other downstream 499334 56580391 ~ 56582721 (+) True LOC110494160
TU1677978 other downstream 1036645 57117702 ~ 57118886 (+) True G1467020
TU1677991 other downstream 1065456 57146513 ~ 57147741 (+) False G1467030

Expression Profile