RNA id: XM_021568916.2



Basic Information


Item Value
RNA id XM_021568916.2
length 959
RNA type mRNA
GC content 0.54
exon number 8
gene id LOC110494144
representative True

Chromosome Information


Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 56108382 ~ 56112085 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ACTAAACCAGTTGGATGAAGCTCACTTATCAGTCACGAATAAGAAACAAAAAGCAGTATAAAGGAGTTCCACCAGCACTCATGACAGCAGCAACATGACTTCTATCATTTTGGTCTTGGCCCTTGTTGCCAGTGCATCTGGCTGTGGAACCCCAGCCATTAAGCCTGATACTACCCGCGTGGTCAATGGCGTGGATGCCCGCCCCAACAGCTGGCCTTGGCAGATCTCTCTGCAGTATGAGAGAAATGGTGAGTACAGACACACCTGTGGTGGATCCCTCATCGCTACCAACTGGGTTATGACTGCTGCCCACTGCATTGATCTGAAGCTGAATTATCGTGTGGTTGTGGGCAAGCACAACCTGGCAGAGGCTGAGCCCAGTGCTCAGGCTTACTTCCCAGCTAAGAAAGGAATCATCGTGCACAAACACTATAACCCTGTCCTCCTGTCAGTAGGCAATGACATCGCCATGATCAAGCTGGCAGAGCATGTGACTCTGAGTGACCAGGTCCAGCTGGCTTGTGTCCCCGCCCCCGGAACCATCCTGTCCAATAATTACCCCTGCTACATCACCGGCTGGGGAAGACTCACCACCGGAGGTCCCACCCCCGACACCCTCCAGCAGGCCCTGATGCCCGTGGTGGACCACAATACGTGTACCCAGAGCGACTGGTGGGGCGTGTCCATTCGCAGGTCCATGGTCTGCGCCGGCGGGGACGGAGTGGTGGGAGGCTGCAACGGTGACTCTGGTGGCCCACTGAACTGTAAGAACTCTGCGGGAGTATGGGAGGTGCATGGCATTGCTAGCTTCGTCTCCGGCCAGGGCTGCAACTACATCAAGAAACCCACCGTCTTCACCCGCGTCTCCGACTACAATGAGTGGATTGATGAGACCATGATGGACAACTAAGACGTGTCGGTGTGCTCTTCAAATAAAGACCTATAAATACATGAGAAAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1676940 lncRNA upstream 110035 55996860 ~ 55998347 (+) False G1466124
TU1676945 lncRNA upstream 110035 55997116 ~ 55998347 (+) True G1466124
TU1676941 lncRNA upstream 110133 55996860 ~ 55998249 (+) False G1466124
TU1676944 lncRNA upstream 110133 55997116 ~ 55998249 (+) False G1466124
TU1676937 lncRNA upstream 114208 55992417 ~ 55994174 (+) True G1466121
TU1677004 lncRNA downstream 74371 56186456 ~ 56192392 (+) True LOC110494146
TU1677469 lncRNA downstream 166060 56278145 ~ 56278451 (+) True G1466592
TU1677471 lncRNA downstream 167371 56279456 ~ 56279858 (+) True G1466594
TU1677504 lncRNA downstream 209929 56322014 ~ 56322229 (+) True G1466625
TU1677478 lncRNA downstream 212506 56324591 ~ 56329073 (+) True LOC110494150
XM_021568915.2 mRNA upstream 13825 56088149 ~ 56094557 (+) False LOC110494143
XM_036950221.1 mRNA upstream 27325 56056291 ~ 56081057 (+) False LOC110494131
XM_021568899.2 mRNA upstream 27325 56056292 ~ 56081057 (+) False LOC110494131
XM_036950222.1 mRNA upstream 27325 56058040 ~ 56081057 (+) True LOC110494131
XM_021568904.2 mRNA upstream 69061 56030123 ~ 56039321 (+) False LOC110494134
XM_021568920.2 mRNA downstream 58524 56170609 ~ 56192396 (+) False LOC110494146
XM_021568922.2 mRNA downstream 58528 56170613 ~ 56192396 (+) False LOC110494146
XM_021568919.2 mRNA downstream 58532 56170617 ~ 56192396 (+) False LOC110494146
XM_021568921.2 mRNA downstream 58537 56170622 ~ 56192396 (+) False LOC110494146
XM_036950224.1 mRNA downstream 59318 56171403 ~ 56192396 (+) False LOC110494146
TU1676956 other upstream 91769 56015577 ~ 56016613 (+) False G1466131
TU1676957 other upstream 91769 56015577 ~ 56016613 (+) True G1466131
TU1676946 other upstream 110208 55996648 ~ 55998174 (+) False G1466124
TU1674965 other upstream 1633910 54471705 ~ 54474472 (+) False LOC110494110
TU1677057 other downstream 107157 56219242 ~ 56220946 (+) True G1466224
TU1677617 other downstream 468306 56580391 ~ 56582721 (+) True LOC110494160
TU1677978 other downstream 1005617 57117702 ~ 57118886 (+) True G1467020
TU1677991 other downstream 1034428 57146513 ~ 57147741 (+) False G1467030
TU1677994 other downstream 1037218 57149303 ~ 57150343 (+) True G1467031

Expression Profile