RNA id: XM_021568920.2


Basic Information

Item Value
RNA id XM_021568920.2
length 3726
RNA type mRNA
GC content 0.42
exon number 6
gene id LOC110494146
representative False

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 56170609 ~ 56192396 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGGCTCCAAGACGGCGTGGACCAGATTGACGCGCTCTCCCCATTATTTATTGTTTTTGCAGTGAGGATTCACTCTCTTTAGATAATTATTTTGTAACTTATCCGCAGAAAAACGTTGTTTTGAGGTCAAAAAGCAGTATGCAAATCAGGGAGCCAAATGTACGGCTCTTTCACCGATTCCATTATGTTCCCGACGTTCACCAACAAGATACATTCAAAAAGAGCCGTTTGTTCGTGAATGACAGATCACTAGGACCGACGTAGCTCTGTCTGTTTTGGTTGAGTCACCAGATCTGACCATGCCTTACTGACAGACTAGAGGCAGAAAACAAACGTGAATCACACAAAAATAACAGATCGTTTATGCGACAACCTAAGGAATAAGTCGAGTATTTTTGTGCTTACAAGTATTAAGATCTTACATCGGTTTGGCggtgtagctagctaacaccaaTCGTCGAAAATGATGAAGGAAGAAGAAATTGATAGGTTCCAAGTACCCCCAGTTACGGAGACGCAGCCCTTGGACCCAGCAGCATCCTCCACCTCCGAGGCCGACTCCGATACTAGAGAAGGGGAAACGGTGGCCATGAACTACAAGCCCTCCCCACTGCAAGTGAAAATAGagaaacagagagagctggCCAGGAAGGTATCAGTAAAAAATGGCACCGTGGGTAGCCCCGTCAACCAGCAACCCAAGAAGAACAACGTCATGGCCAGAACACGGTTGGTGGTGCCAAACAAAGGCTACTCCTCTTTAGACCAGACCAGCCCAGATGAGAAGCCCCTGGTAGCGCTGGATACAGACAGTGATGATGACTTTGACATGTCCAGATACTCTTCGTCTGGATACTCCTCAGCCGAGGTGAGATGTCTGAGGGACCAGCAGATCAACCAGGACCTCAACATCCAGCTTCTGAAGGACGGTTACCGGCTAGACGAGATCCCTGACGACGAGGATCTGGATCTGATCCCTCCCAAATCAGTCAACCCCACCTGCATGTGCTGCCAAGCCACCTCCTCCTCAGCCTGCCACATCCAGTAGCCCCTCCCATGACAGATGCCCCTGCCACCAGGGCAGCAACAAGGAAGAGGAGTTTAAATGATTGGGGGGACGGGACAGAAGAATAGGTGTATTGGAATTAGTGTGGATTTGAAAAGGGTGAAAATGCAGAACACATTTACTGAGAGTAACTGGTTCCTCCTATGGTAGGACATGTGCATACGTTTGTCTGTTACGTTATAGGGTCTTTGTCTGAGTAGTATTCAGAAGCAGCTCTCCCTTGTCTCATCTTGGAATATTACATGGATGGCAATGGAAAGGTCTCAAATGCTGAACTTGTGTGAGATGGCAGTGTTTCGAAGATGGTCACTTGAGGATTATGTCGTCTTAAGCTTTTTTTTGACCTCCTGAAAGTCTTTGTTGCTGGTACTGTATGGAGGGATCAACAGGGAATGTACTGTGAGCGTGGAAAAAGGACAAACATTTGATTGAAGatctgtctgagtgtgtgtaaCGTGTCTAAAATCAAATATCAAATCTTTTAGAATATTTAAGGAGATACTGCAACGAACACAGAGGAATCCCGAATATTTATTTTATGTTCCCAAGCAGGCATCTCACAAGTTAAAATGCAAAGTGAGTTTTGAGTTGAGTGGATTTGCAGCAGTCTGTCTTCTCGCTCCTCTATCTTTTCTGATCagattttctctctcttcctgttgtcGTGATACGTGTTTCACATGATGATATTTGAATTCTCATACAAAGACATCAGAATAACTATTCCTATTTAAAACTTTGATATATGACTTGAGAACAGCTTTGCATGTTGCTCACTGTGCCACTTAGATAAACACCCTTACCAATACAGTAACTGGGGAGGGGGGGTTAGGCTCTCAACTTGACCCACTGCatccttagcctggtcccagatctgtctggtGCTCTCTTGACAAACTGAAGTATGGTCAAGGTAAgactgcacaaacagatctgggaccagtctactGCGACTTCACCCTAGCGCCAATTAGATCTGGTCATTTTCTTGTGCAGTACTTAACTTAGAGAAAAGATATGGGATTCAAAGGTCACaaagcctggttccagatctgtttgtgctgtcttgcgcattgtttggcatgacaatgaccataggagctGGCAAGATGgtacaaactgatctgggaccaggctaggtctGATACTGTATGGTGAAGCCAATGTGTATTTAGTGCCATTCTACTACTGTCCACATGAAAATGATAACTTATTTTAGTGGATATTTCTGTAACACTAAATGGTTTGTTACCCCTCAATATAATTGTATATTGGGTCATCCTGCTTATACGTATACTCATTGTTGATTTCACTATGCTGTCTTCACTTGTCTATTGTGCTTCTAATCTTATCTTTTTATTTTGTTGTAAATTGCTTTGAACTGTTGTATGAAAGCACATTTTCCAATATGCTCAATAGGATTAATGTGCTAACAACCATGTGCTAACCATTACTGTACCTGCCATACTATAATACCATTTCATAGTCCTGGCACCCAGTGGTTGTGGGTACTGTAGTTTAACTGTGCCAAAaggccatttaaaaaaacaatgtaTTTGTATAATAGTGtccaaaaaaaaacactttcatgGGCATAACAGCCATAATTTTAACATGAGATGGTGTTAAAATATTGTATGAATATACCAGTTGAAATGGAGAATGTGTTCTTCTGAATTCCTGAGCAGTGATATTACCAGTACACTAATGATAGTGGGCAAAATGTCCGCCTGTACACACAGCAGCCCATGTCCTCCTATAGTGCTTCCAGAAGTAGGCTGTAGCGTCACGTTGTGCTTCTCTCACTGCCACTGACACAGTCTGTGCAATCACACAGGCACAGTACAcatggcgcacacacacagaatgcaCTATGGAATGCTTCAAATTGGAAATTGCTCCTCATGTCTAACGATCCAAGACTGTGTATAGCGTACTATATGTAAAGCAAGGGATGGATGAGGTAAATATGTTATTTACTGTATTTCTTTGGGTGCTTGGTTATCCAGTGCATTCCACTGTAGTGCAATGAATGATATGAGGGATTGACTCCAGTTTGAAAACACACAAATCAAGCACAAATGGGTCAATGCAAAATAATGAAAATACCTGCTGTTTTAGGATGGTGCGAAACAGGGAACACTGTGTTCAGTAGGCAAGAAGTGGAAAAACGCTTTGTCTATATTCAAGGATGCATCATCCAAATAGCAATGGAAATGTATCCCTGCTTTGTCTGAGCGCTAAGCATTAGCTTCCCCTGTCATTGTGATCACAAGTTCACACTCTCTGATCACACTCACTCTCACCCCAGAGTTGTCTAAAGTAGAGTATGCCTTAAGTAATGCATTGTATTGGAAGATATTTATTGCCTGTTTATTTGTTTTAATTTATTTGGGGGGGGGTCTACATTTTAACATAGACAGAGGGCAGCACTTACAGCTATGAAACTGCACTGAAATTCTACAGTACTCATAATATTGTGAGTTTAGTGCCATTTTGCGGATGTTAAATATTGCCCATAggcttttttggggggtatcatTCAGACACTCATTGTGATTTTAATGAAGATGTGAACAATTCAAGTTTCTGTATGTAACAATGTTATTGTTCTGTGTAGTGTATCATGTCTACAAATAAATATCAACGGTCTGAATTAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1676940 lncRNA upstream 172262 55996860 ~ 55998347 (+) False G1466124
TU1676945 lncRNA upstream 172262 55997116 ~ 55998347 (+) True G1466124
TU1676941 lncRNA upstream 172360 55996860 ~ 55998249 (+) False G1466124
TU1676944 lncRNA upstream 172360 55997116 ~ 55998249 (+) False G1466124
TU1676937 lncRNA upstream 176435 55992417 ~ 55994174 (+) True G1466121
TU1677469 lncRNA downstream 85749 56278145 ~ 56278451 (+) True G1466592
TU1677471 lncRNA downstream 87060 56279456 ~ 56279858 (+) True G1466594
TU1677504 lncRNA downstream 129618 56322014 ~ 56322229 (+) True G1466625
TU1677478 lncRNA downstream 132195 56324591 ~ 56329073 (+) True LOC110494150
TU1677513 lncRNA downstream 148865 56341261 ~ 56342125 (+) True G1466630
XM_021568916.2 mRNA upstream 58524 56108382 ~ 56112085 (+) True LOC110494144
XM_021568915.2 mRNA upstream 76052 56088149 ~ 56094557 (+) False LOC110494143
XM_036950221.1 mRNA upstream 89552 56056291 ~ 56081057 (+) False LOC110494131
XM_021568899.2 mRNA upstream 89552 56056292 ~ 56081057 (+) False LOC110494131
XM_036950222.1 mRNA upstream 89552 56058040 ~ 56081057 (+) True LOC110494131
XM_021568923.2 mRNA downstream 365 56192761 ~ 56202852 (+) True zgc:109965
XR_005036703.1 mRNA downstream 132390 56324786 ~ 56329042 (+) False LOC110494150
XM_021568929.2 mRNA downstream 175636 56368032 ~ 56374725 (+) False LOC110494151
XM_021568930.2 mRNA downstream 254696 56447092 ~ 56452377 (+) False LOC110494152
XM_036950229.1 mRNA downstream 254696 56447092 ~ 56452377 (+) True LOC110494152
TU1676992 other upstream 43128 56088178 ~ 56127481 (+) True LOC110494143
TU1676956 other upstream 153996 56015577 ~ 56016613 (+) False G1466131
TU1676957 other upstream 153996 56015577 ~ 56016613 (+) True G1466131
TU1676946 other upstream 172435 55996648 ~ 55998174 (+) False G1466124
TU1674965 other upstream 1696137 54471705 ~ 54474472 (+) False LOC110494110
TU1677057 other downstream 26846 56219242 ~ 56220946 (+) True G1466224
TU1677617 other downstream 387995 56580391 ~ 56582721 (+) True LOC110494160
TU1677978 other downstream 925306 57117702 ~ 57118886 (+) True G1467020
TU1677991 other downstream 954117 57146513 ~ 57147741 (+) False G1467030
TU1677994 other downstream 956907 57149303 ~ 57150343 (+) True G1467031

Expression Profile