RNA id: TU1677476


Basic Information

Item Value
RNA id TU1677476
length 1635
lncRNA type sense_over
GC content 0.41
exon number 2
gene id LOC110494151
representative True

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 56368032 ~ 56374726 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cctccaccagcTCCTCCTCATTCGTGTCGTCGGCCTCCTCCGACGAGGAGCTGGATGAGGAAATCTTGCATATCATCTCCAACGCCAACTTCGACAGCATGCCTATGGATTGCGCCACTCTGGACAAAGACTTTGATGCTGCGTTTCACACCAACTCAGGATCCCACTTCGATTTCCCTGACTACTGCACCCCAGAAGTGAATGAGATGATATCCGGGGACTTGCTGGTGCCCAGTATCTCTGACCTGGTGTTCAAGATCTACTGACCTTCATTCATAAAAGCCTGTGGTTTTTTgcttatattatttatttttccccACCCTGAGCTTGGACACTTCCTTTTTGTGTTCTCTCAATCAAGTCCcTACAGCGTCTTGCATGTGGCTGCCACCACGGTGACCTGGGGCCCCCAGCAGGACCAGTCCAGGGCTATAGGGGTCCACAGGGGCCACTCTCAACCTCAGGGTCCTAGTAGGACTTAACTTACCATTCCTTTAAACCACACCGAcctgacaacacaacagcagCACTGGGAGACCCGGCTTGCTGCACACAGAAGTAGCCAAAATATGACCATGATGCCTCACATACAAGTACATATTGTTTACAAGGttttacagtattatagtctgagCTGAATACAGAATGTTTCCTCCGCTTTCATCCTCGCAGCAAGggttattttgatttgtttacaatGTCAAATATGATTTGTAGTCTATTCACCAGCACGTTTTGGTCTTAGTCGTGGCAAATTGTAACAAAACCTATTTCTGCGACATGAAACAAGCTGAATCTTGTTAAGCTGAAAATATGCTTGTGTTGAACTTTGATTCCTCAACGTTATTGTAAAACAGGGGAAATGGGGatgtttaaatatattttcatgtgTTACAAATGCATTGCATCCAGCAGTACACTCCAGAGTGTACTAGTCTGAACAAACTGTCTAATCAAATCTATAAGGCTCACCCCTATTAATccatatatagatatatattggcatacattttaagatCTGTGTTGATAAATGTAATTGGTCGATAAGTAGAACCAAAATTCTTGACATTGCATTGATAATAGGTATGCATGTACAAATAGTAAATGTCTCTAACAATGGGAGTAATTGCACTTCGTATAGCCTCCCATGAAACACTTGTATTGAAAACCAGGGGAAAATGGTGGAAAAAGTCATTTAGAAAAATGCATCACTATGCTAACAAAACTTAATGCTAATATTGTCGTATTGGAACCCCCCTCTGCTGTGTAGACTGTCATTCCTGCACTATTCATTATGGATTGGTGCATAACAAACATGATGTGTTTCTATCAATCAGTCATTTGCTGTATTGCAATTCCATAAAGCTCATTTAATCTGTGTGCAAAATGGTTCAACAGCTAACCATCCCGTTCATCTTGGTATCGCGTTTGACCAATAATTAGCATTGCTTTATCATGTATATGTATGCTTTTTGTAGTGTGGTACATTCAGCTGTTCTGACAGCGTGTGTGTGGATAGAAATCAAAGCACTTTGTTGTAAATATGTACGTAGATCTGAGAGACGCCATTTTTCATTTTGGATAGAGTTATCAGTGTAATGACACTCCATCACTGAATAAACTGTTACAGTCAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1677516 lncRNA upstream 26632 56343020 ~ 56343223 (+) True G1466632
TU1677515 lncRNA upstream 27313 56342327 ~ 56342542 (+) True G1466631
TU1677513 lncRNA upstream 27730 56341261 ~ 56342125 (+) True G1466630
TU1677478 lncRNA upstream 40782 56324591 ~ 56329073 (+) True LOC110494150
TU1677504 lncRNA upstream 47626 56322014 ~ 56322229 (+) True G1466625
TU1677596 lncRNA downstream 106261 56480987 ~ 56483412 (+) True G1466702
TU1677606 lncRNA downstream 120128 56494854 ~ 56506137 (+) True G1466708
TU1677604 lncRNA downstream 158942 56533668 ~ 56536745 (+) True G1466707
TU1677652 lncRNA downstream 184787 56559513 ~ 56559838 (+) True G1466742
TU1677689 lncRNA downstream 269788 56644514 ~ 56644724 (+) True G1466775
XR_005036703.1 mRNA upstream 40813 56324786 ~ 56329042 (+) False LOC110494150
XM_021568923.2 mRNA upstream 167003 56192761 ~ 56202852 (+) True zgc:109965
XM_021568921.2 mRNA upstream 177459 56170622 ~ 56192396 (+) False LOC110494146
XM_021568930.2 mRNA downstream 72366 56447092 ~ 56452377 (+) False LOC110494152
XM_036950229.1 mRNA downstream 72366 56447092 ~ 56452377 (+) True LOC110494152
XM_021568931.2 mRNA downstream 86617 56461343 ~ 56473775 (+) False rbck1
XM_021568932.2 mRNA downstream 86617 56461343 ~ 56473775 (+) False rbck1
XM_021568933.2 mRNA downstream 86617 56461343 ~ 56473775 (+) True rbck1
TU1677057 other upstream 148909 56219242 ~ 56220946 (+) True G1466224
TU1676992 other upstream 242374 56088178 ~ 56127481 (+) True LOC110494143
TU1676956 other upstream 353242 56015577 ~ 56016613 (+) False G1466131
TU1676957 other upstream 353242 56015577 ~ 56016613 (+) True G1466131
TU1676946 other upstream 371681 55996648 ~ 55998174 (+) False G1466124
TU1677617 other downstream 205665 56580391 ~ 56582721 (+) True LOC110494160
TU1677978 other downstream 742976 57117702 ~ 57118886 (+) True G1467020
TU1677991 other downstream 771787 57146513 ~ 57147741 (+) False G1467030
TU1677994 other downstream 774577 57149303 ~ 57150343 (+) True G1467031
TU1678132 other downstream 1104071 57478797 ~ 57483589 (+) True G1467159

Expression Profile